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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1at1:A (2.8) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 2405902
    2 1at1:C (2.8) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 2405902
    3 1sc3:A (1.8) BS01 MLI 3.4.22.36 GO:0004197 ... P29466 15296730
    4 1tug:A (2.1) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 15288791
    5 2o67:A (2.5) BS01 MLI ? GO:0006808 ... Q9ZST4 17279613
    6 2o67:B (2.5) BS01 MLI ? GO:0006808 ... Q9ZST4 17279613
    7 2o67:B (2.5) BS02 MLI ? GO:0006808 ... Q9ZST4 17279613
    8 2o67:C (2.5) BS01 MLI ? GO:0006808 ... Q9ZST4 17279613
    9 2zo9:B (2.2) BS03 MLI 3.1.4.46 GO:0004112 ... Q6XBH1 18678932
    10 2zo9:C (2.2) BS03 MLI 3.1.4.46 GO:0004112 ... Q6XBH1 18678932
    11 2zoa:A (2.4) BS03 MLI 3.1.4.46 GO:0004112 ... Q6XBH1 18678932
    12 2zoa:B (2.4) BS03 MLI 3.1.4.46 GO:0004112 ... Q6XBH1 18678932
    13 3l6b:A (1.5) BS03 MLI 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 20106978
    14 3l6c:A (2.2) BS03 MLI 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q76EQ0 20106978
    15 3l6c:B (2.2) BS03 MLI 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q76EQ0 20106978
    16 3l6r:A (1.7) BS01 MLI 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 20106978
    17 3odm:A (2.95) BS01 MLI 4.1.1.31 GO:0000287 ... Q8XLE8 21491491
    18 3odm:C (2.95) BS01 MLI 4.1.1.31 GO:0000287 ... Q8XLE8 21491491
    19 3odm:D (2.95) BS01 MLI 4.1.1.31 GO:0000287 ... Q8XLE8 21491491
    20 3odm:E (2.95) BS01 MLI 4.1.1.31 GO:0000287 ... Q8XLE8 21491491
    21 3odm:H (2.95) BS01 MLI 4.1.1.31 GO:0000287 ... Q8XLE8 21491491
    22 4amp:A (1.65) BS01 MLI ? GO:0016740 ... Q84HI8 22589546
    23 4gys:A (2.201) BS01 MLI 3.5.1.54 GO:0003824 ... Q0BRB0 23282241
    24 4gys:A (2.201) BS02 MLI 3.5.1.54 GO:0003824 ... Q0BRB0 23282241
    25 4gys:B (2.201) BS01 MLI 3.5.1.54 GO:0003824 ... Q0BRB0 23282241
    26 4gys:B (2.201) BS02 MLI 3.5.1.54 GO:0003824 ... Q0BRB0 23282241
    27 4x1b:A (2.45) BS02 MLI ? GO:0005515 ... P02787 25854324
    28 4x1d:A (2.8) BS01 MLI ? GO:0005515 ... P02787 25854324
    29 4x1d:B (2.8) BS01 MLI ? GO:0005515 ... P02787 25854324
    30 5e9h:A (2.3) BS01 MLI 4.1.3.1
    4.1.3.30    		 GO:0003824 ... Q4HYR2 27016285
    31 5jj2:A (1.25) BS01 MLI ? N/A Q9P0M2 27487922
    32 5jj2:A (1.25) BS02 MLI ? N/A Q9P0M2 27487922
    33 5jj2:A (1.25) BS03 MLI ? N/A Q9P0M2 27487922
    34 5k87:A (1.219) BS01 MLI 5.3.3.- GO:0016853 ... Q8EJW4 29145506
    35 5k87:A (1.219) BS02 MLI 5.3.3.- GO:0016853 ... Q8EJW4 29145506
    36 5k87:B (1.219) BS01 MLI 5.3.3.- GO:0016853 ... Q8EJW4 29145506
    37 5k87:B (1.219) BS02 MLI 5.3.3.- GO:0016853 ... Q8EJW4 29145506
    38 5vit:A (2.203) BS01 MLI ? GO:0016740 ... Q9I6T0 28757619
    39 5vit:I (2.203) BS01 MLI ? GO:0016740 ... Q9I6T0 28757619
    40 5vit:P (2.203) BS01 MLI ? GO:0016740 ... Q9I6T0 28757619
    41 5vit:V (2.203) BS01 MLI ? GO:0016740 ... Q9I6T0 28757619
    42 6a2f:A (2.5) BS01 MLI 5.1.1.1 GO:0003824 ... Q9HUN4 29964014
    43 6a2f:B (2.5) BS04 MLI 5.1.1.1 GO:0003824 ... Q9HUN4 29964014
    44 6ayu:A (2.2) BS03 MLI 3.1.3.11 GO:0005737 ... P9WN21 29652259
    45 6ayv:A (2.3) BS04 MLI 3.1.3.11 GO:0005737 ... P9WN21 29652259
    46 6b3b:A (1.85) BS03 MLI ? N/A A0A1U7N2Z8 29096064
    47 6kbj:A (2.2) BS03 MLI ? N/A E7E2M2 32112837
    48 6kbj:A (2.2) BS04 MLI ? N/A E7E2M2 32112837
    49 6kbj:A (2.2) BS05 MLI ? N/A E7E2M2 32112837
    50 6uj6:A (2.68) BS02 MLI ? GO:0005576 ... P02787 32650146
    51 6xgt:A (2.2) BS01 MLI N/A GO:0003677 ... N/A 33431973
    52 6xgt:B (2.2) BS01 MLI N/A GO:0003677 ... N/A 33431973
    53 6xgt:D (2.2) BS01 MLI N/A GO:0003677 ... N/A 33431973
    54 6xgt:F (2.2) BS01 MLI N/A GO:0003677 ... N/A 33431973
    55 6xgt:G (2.2) BS01 MLI N/A GO:0003677 ... N/A 33431973
    56 6xgt:H (2.2) BS01 MLI N/A GO:0003677 ... N/A 33431973
    57 6ymd:A (1.25) BS02 MLI 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    58 6ymd:A (1.25) BS03 MLI 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    59 6ymd:B (1.25) BS02 MLI 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    60 6ymd:B (1.25) BS03 MLI 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    61 6zsp:AAA (1.6) BS02 MLI 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    62 6zsp:BBB (1.6) BS02 MLI 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    63 7ecs:A (1.74) BS01 MLI 1.4.1.4 GO:0000166 ... T2D1F5 34748226
    64 7ecs:A (1.74) BS02 MLI 1.4.1.4 GO:0000166 ... T2D1F5 34748226
    65 7ecs:B (1.74) BS01 MLI 1.4.1.4 GO:0000166 ... T2D1F5 34748226
    66 7ecs:B (1.74) BS02 MLI 1.4.1.4 GO:0000166 ... T2D1F5 34748226
    67 7ecs:C (1.74) BS01 MLI 1.4.1.4 GO:0000166 ... T2D1F5 34748226
    68 7ecs:C (1.74) BS02 MLI 1.4.1.4 GO:0000166 ... T2D1F5 34748226
    69 7rm9:A (1.65) BS01 MLI 1.1.1.37
    1.1.1.96    		 GO:0003824 ... P40925 35036692
    70 8a8t:A (2.11) BS02 MLI ? N/A A9WIU3 37952891
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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