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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2q1b:A (1.7) BS02 LSA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17705204 MOAD: Ki=5950nM
    BindingDB: Ki=5950nM
    2 2q38:A (1.95) BS02 LSA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17705204 MOAD: Ki=5950nM
    PDBbind: -logKd/Ki=5.23, Ki=5950nM
    BindingDB: Ki=5950nM
    3 2q38:A (1.95) BS03 LSA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17705204 MOAD: Ki=5950nM
    PDBbind: -logKd/Ki=5.23, Ki=5950nM
    BindingDB: Ki=5950nM
    4 3srk:A (2.65) BS01 LSA 2.7.1.40 GO:0000287 ... Q27686 N/A
    5 3srk:B (2.65) BS01 LSA 2.7.1.40 GO:0000287 ... Q27686 N/A
    6 4n1o:A (1.75) BS01 LSA 5.2.1.8 GO:0000413 ... P62937 N/A
    7 4n1o:A (1.75) BS02 LSA 5.2.1.8 GO:0000413 ... P62937 N/A
    8 4n1o:A (1.75) BS03 LSA 5.2.1.8 GO:0000413 ... P62937 N/A
    9 4n1o:A (1.75) BS04 LSA 5.2.1.8 GO:0000413 ... P62937 N/A
    10 4n1o:A (1.75) BS05 LSA 5.2.1.8 GO:0000413 ... P62937 N/A
    11 4riv:A (1.631) BS02 LSA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25614109 PDBbind: -logKd/Ki=7.00, Ki=100nM
    BindingDB: Ki=5950nM
    12 4riv:A (1.631) BS03 LSA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25614109 PDBbind: -logKd/Ki=7.00, Ki=100nM
    BindingDB: Ki=5950nM
    13 5rsp:A (1.02) BS01 LSA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    14 6fjj:A (1.5) BS02 LSA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30639924 MOAD: Ki=100nM
    BindingDB: Ki=5950nM
    15 7wjv:B (1.724) BS01 LSA 3.1.3.11 GO:0000122 ... P09467 35786925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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