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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hpc:B (2.0) BS01 LPA 1.4.4.2 GO:0005960 ... P16048 15299773
    2 1x2h:A (2.91) BS01 LPA 6.3.1.20 GO:0005524 ... P32099 16043486
    3 1x2h:B (2.91) BS01 LPA 6.3.1.20 GO:0005524 ... P32099 16043486
    4 2art:A (2.4) BS02 LPA 6.3.1.20 GO:0005515 ... Q9HKT1 16141198
    5 2c8m:A (1.89) BS01 LPA 6.3.1.20 GO:0005515 ... Q9HKT1 16384580
    6 2c8m:B (1.89) BS01 LPA 6.3.1.20 GO:0005515 ... Q9HKT1 16384580
    7 2c8m:C (1.89) BS01 LPA 6.3.1.20 GO:0005515 ... Q9HKT1 16384580
    8 2c8m:D (1.89) BS01 LPA 6.3.1.20 GO:0005515 ... Q9HKT1 16384580
    9 2iqd:A (2.0) BS02 LPA 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 17083960 MOAD: Ki=25.5uM
    BindingDB: Ki=25500nM
    10 5iby:A (1.85) BS01 LPA 6.3.1.20 GO:0005524 ... Q830N7 N/A
    11 5ij6:A (2.0) BS01 LPA 6.3.1.20 GO:0005524 ... Q838C1 N/A
    12 5t8u:A (2.324) BS01 LPA 6.3.1.20 GO:0009249 ... Q8IEG9 28543853
    13 5t8u:B (2.324) BS01 LPA 6.3.1.20 GO:0009249 ... Q8IEG9 28543853
    14 7yva:B (2.93) BS02 LPA 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    15 8cri:A (2.1) BS01 LPA 6.3.1.20 GO:0005524 ... A0A1D2IX29 37249408
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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