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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d7u:A (1.95) BS02 LCS 4.1.1.64 GO:0008453 ... P16932 10556038
    2 4d9e:A (2.47) BS01 LCS 4.4.1.15 GO:0003824 ... Q8ZNT7 22574144
    3 4d9e:B (2.47) BS01 LCS 4.4.1.15 GO:0003824 ... Q8ZNT7 22574144
    4 4d9e:C (2.47) BS01 LCS 4.4.1.15 GO:0003824 ... Q8ZNT7 22574144
    5 4d9e:D (2.47) BS01 LCS 4.4.1.15 GO:0003824 ... Q8ZNT7 22574144
    6 4oma:A (1.6) BS01 LCS 4.4.1.11 GO:0005737 ... Q84AR1 25398880 PDBbind: -logKd/Ki=4.17, Ki=68uM
    7 6qp1:A (1.42) BS01 LCS N/A GO:0009058 ... N/A 32719469
    8 6qp1:B (1.42) BS01 LCS N/A GO:0009058 ... N/A 32719469
    9 8ahu:A (1.41) BS01 LCS ? GO:0003824 ... F4KWH0 37331714
    10 8aie:A (1.9) BS01 LCS ? GO:0003824 ... D5EHC5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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