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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2r1y:A (1.6) BS01 KDO ? GO:0046872 ... Q52L64 18272175 PDBbind: -logKd/Ki=4.51, Kd=31uM
    2 2r1y:B (1.6) BS02 KDO ? GO:0002250 ... A2NU21 18272175 PDBbind: -logKd/Ki=4.51, Kd=31uM
    3 2r2b:A (1.6) BS01 KDO ? GO:0046872 ... Q52L64 18272175
    4 2r2b:B (1.6) BS01 KDO N/A N/A N/A 18272175
    5 2r2b:B (1.6) BS02 KDO N/A N/A N/A 18272175
    6 3ijs:A (2.55) BS01 KDO N/A N/A N/A 19767317
    7 3ijs:B (2.55) BS01 KDO N/A N/A N/A 19767317
    8 3ijs:C (2.55) BS01 KDO N/A N/A N/A 19767317
    9 3ijs:D (2.55) BS01 KDO N/A N/A N/A 19767317
    10 3ijy:A (2.85) BS01 KDO N/A N/A N/A 19767317 PDBbind: -logKd/Ki=6.04, Kd=0.91uM
    11 3ijy:B (2.85) BS01 KDO N/A N/A N/A 19767317 PDBbind: -logKd/Ki=6.04, Kd=0.91uM
    12 3ijy:C (2.85) BS01 KDO N/A N/A N/A 19767317
    13 3ijy:D (2.85) BS01 KDO N/A N/A N/A 19767317
    14 3ikc:A (2.6) BS01 KDO N/A N/A N/A 19767317 PDBbind: -logKd/Ki=7.46, Kd=0.035uM
    15 3ikc:B (2.6) BS02 KDO N/A N/A N/A 19767317 PDBbind: -logKd/Ki=7.46, Kd=0.035uM
    16 3ikc:C (2.6) BS01 KDO N/A N/A N/A 19767317
    17 3ikc:D (2.6) BS01 KDO N/A N/A N/A 19767317
    18 4hgw:A (1.65) BS01 KDO N/A N/A N/A 23295476
    19 4hgw:B (1.65) BS02 KDO N/A N/A N/A 23295476
    20 8csc:A (1.9) BS02 KDO ? GO:0000271 ... Q6U8B0 36271007
    21 8csc:B (1.9) BS02 KDO ? GO:0000271 ... Q6U8B0 36271007
    22 8csd:A (1.95) BS02 KDO ? GO:0000271 ... Q6U8B0 36271007
    23 8csd:B (1.95) BS02 KDO ? GO:0000271 ... Q6U8B0 36271007
    24 8csf:A (2.4) BS03 KDO ? GO:0000271 ... Q6U8B0 36271007
    25 8csf:B (2.4) BS03 KDO ? GO:0000271 ... Q6U8B0 36271007
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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