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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3a5y:A (1.9) BS01 KAA 6.3.1.- GO:0000049 ... P0A8N7 20729861 MOAD: Kd=11nM
    PDBbind: -logKd/Ki=7.96, Kd=11nM
    2 3a5y:B (1.9) BS01 KAA 6.3.1.- GO:0000049 ... P0A8N7 20729861 MOAD: Kd=11nM
    PDBbind: -logKd/Ki=7.96, Kd=11nM
    3 3a5y:C (1.9) BS01 KAA 6.3.1.- GO:0000049 ... P0A8N7 20729861 MOAD: Kd=11nM
    4 3a5y:D (1.9) BS01 KAA 6.3.1.- GO:0000049 ... P0A8N7 20729861 MOAD: Kd=11nM
    5 3a5z:A (2.5) BS01 KAA 6.3.1.- GO:0000049 ... P0A8N7 20729861
    6 3a5z:C (2.5) BS01 KAA 6.3.1.- GO:0000049 ... P0A8N7 20729861
    7 3a5z:E (2.5) BS01 KAA 6.3.1.- GO:0000049 ... P0A8N7 20729861
    8 3a5z:G (2.5) BS01 KAA 6.3.1.- GO:0000049 ... P0A8N7 20729861
    9 3e9h:A (2.1) BS02 KAA 6.1.1.6 GO:0000049 ... Q9RHV9 19174549 PDBbind: -logKd/Ki=7.55, Ki=28nM
    10 3e9h:B (2.1) BS02 KAA 6.1.1.6 GO:0000049 ... Q9RHV9 19174549
    11 3e9h:C (2.1) BS02 KAA 6.1.1.6 GO:0000049 ... Q9RHV9 19174549
    12 3e9h:D (2.1) BS02 KAA 6.1.1.6 GO:0000049 ... Q9RHV9 19174549
    13 4eqe:B (1.52) BS01 KAA 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 22329685
    14 6c86:A (2.15) BS01 KAA 6.1.1.6 GO:0000049 ... Q5CR27 N/A
    15 6c86:B (2.15) BS01 KAA 6.1.1.6 GO:0000049 ... Q5CR27 N/A
    16 6chd:A (2.5) BS01 KAA 2.7.7.-
    6.1.1.6    		 GO:0000049 ... Q15046 N/A
    17 6chd:B (2.5) BS01 KAA 2.7.7.-
    6.1.1.6    		 GO:0000049 ... Q15046 N/A
    18 6ilh:A (2.501) BS01 KAA 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 30733335
    19 6ilh:B (2.501) BS01 KAA 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 30733335
    20 7ea9:A (2.5) BS01 KAA 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 33784510
    21 7ea9:B (2.5) BS01 KAA 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 33784510
    22 7ea9:C (2.5) BS01 KAA 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 33784510
    23 7ea9:D (2.5) BS01 KAA 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 33784510
    24 7f6w:A (2.607) BS01 KAA 6.1.1.6 GO:0000166 ... P15180 35133502
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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