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BioLiP
Download all results in tab-seperated text for 729 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7d52:A (2.2) BS03 K 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    602 7d99:A (2.9) BS01 K ? GO:0005886 ... Q9Y666 33310850
    603 7d99:B (2.9) BS01 K ? GO:0005886 ... Q9Y666 33310850
    604 7dmr:A (2.2) BS05 K 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    605 7e20:A (2.7) BS01 K 7.2.2.13 GO:0000166 ... P05023 35803952
    606 7e20:A (2.7) BS02 K 7.2.2.13 GO:0000166 ... P05023 35803952
    607 7e20:A (2.7) BS03 K 7.2.2.13 GO:0000166 ... P05023 35803952
    608 7lc3:A (3.23) BS02 K ? GO:0005515 ... P03959 34272288
    609 7lc3:A (3.23) BS03 K ? GO:0005515 ... P03959 34272288
    610 7lc6:A (3.7) BS01 K ? GO:0005515 ... P03959 34272288
    611 7n9k:A (2.72) BS01 K ? GO:0005242 ... D9N164 35079013
    612 7n9l:A (2.4) BS01 K ? GO:0005242 ... D9N164 35079013
    613 7pvc:A (-1.00) BS01 K ? GO:0005737 ... P0ADE6 35427452
    614 7ssy:A (2.89) BS01 K ? GO:0001508 ... P22001
    P42212    		 35788586
    615 7ssy:B (2.89) BS01 K ? GO:0001508 ... P22001
    P42212    		 35788586
    616 7ssy:C (2.89) BS01 K ? GO:0001508 ... P22001
    P42212    		 35788586
    617 7ssy:D (2.89) BS01 K ? GO:0001508 ... P22001
    P42212    		 35788586
    618 7vcm:A (1.85) BS01 K ? GO:0005737 ... P0ADE6
    P42212    		 36067248
    619 7vcm:B (1.85) BS01 K ? GO:0005737 ... P0ADE6
    P42212    		 36067248
    620 7wf3:B (3.4) BS01 K ? GO:0005216 ... P22001 35091471
    621 7wf3:D (3.4) BS01 K ? GO:0005216 ... P22001 35091471
    622 7wf3:F (3.4) BS01 K ? GO:0005216 ... P22001 35091471
    623 7wf3:H (3.4) BS01 K ? GO:0005216 ... P22001 35091471
    624 7yid:A (3.4) BS01 K ? GO:0005216 ... Q8NCM2 36928654
    625 7yid:B (3.4) BS01 K ? GO:0005216 ... Q8NCM2 36928654
    626 7yid:C (3.4) BS01 K ? GO:0005216 ... Q8NCM2 36928654
    627 7yid:D (3.4) BS01 K ? GO:0005216 ... Q8NCM2 36928654
    628 7zgo:A (2.55) BS02 K ? GO:0005515 ... P55011 36239040
    629 7zgo:B (2.55) BS02 K ? GO:0005515 ... P55011 36239040
    630 8ar7:A (2.448) BS02 K 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    631 8ar7:B (2.448) BS03 K 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    632 8ar7:C (2.448) BS04 K 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    633 8ar7:D (2.448) BS03 K 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    634 8ar7:E (2.448) BS04 K 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    635 8ar7:F (2.448) BS04 K 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    636 8b70:A (3.3) BS02 K ? GO:0005886 ... P96589 37344476
    637 8b70:B (3.3) BS03 K ? GO:0005886 ... P96589 37344476
    638 8bxg:A (3.16) BS01 K ? GO:0000166 ... P03819 38834573
    639 8bxg:B (3.16) BS01 K ? GO:0000166 ... P03819 38834573
    640 8by2:A (3.18) BS01 K ? GO:0000166 ... P03819 38834573
    641 8by2:B (3.18) BS02 K ? GO:0000166 ... P03819 38834573
    642 8cua:A (2.44) BS01 K ? GO:0001662 ... P43005 37142617
    643 8cua:B (2.44) BS01 K ? GO:0001662 ... P43005 37142617
    644 8cua:C (2.44) BS01 K ? GO:0001662 ... P43005 37142617
    645 8de7:A (3.27) BS01 K ? GO:0005267 ... F1QAI2 36841877
    646 8de7:A (3.27) BS02 K ? GO:0005267 ... F1QAI2 36841877
    647 8de7:A (3.27) BS03 K ? GO:0005267 ... F1QAI2 36841877
    648 8de7:B (3.27) BS01 K ? GO:0005267 ... F1QAI2 36841877
    649 8de7:B (3.27) BS02 K ? GO:0005267 ... F1QAI2 36841877
    650 8de7:B (3.27) BS03 K ? GO:0005267 ... F1QAI2 36841877
    651 8de8:A (2.82) BS03 K ? GO:0005267 ... F1QAI2 36841877
    652 8de8:A (2.82) BS04 K ? GO:0005267 ... F1QAI2 36841877
    653 8de8:A (2.82) BS05 K ? GO:0005267 ... F1QAI2 36841877
    654 8de8:A (2.82) BS06 K ? GO:0005267 ... F1QAI2 36841877
    655 8de8:B (2.82) BS03 K ? GO:0005267 ... F1QAI2 36841877
    656 8de8:B (2.82) BS04 K ? GO:0005267 ... F1QAI2 36841877
    657 8de8:B (2.82) BS05 K ? GO:0005267 ... F1QAI2 36841877
    658 8de8:B (2.82) BS06 K ? GO:0005267 ... F1QAI2 36841877
    659 8de9:A (3.4) BS02 K ? GO:0005267 ... F1QAI2 36841877
    660 8de9:A (3.4) BS03 K ? GO:0005267 ... F1QAI2 36841877
    661 8de9:A (3.4) BS04 K ? GO:0005267 ... F1QAI2 36841877
    662 8de9:B (3.4) BS02 K ? GO:0005267 ... F1QAI2 36841877
    663 8de9:B (3.4) BS03 K ? GO:0005267 ... F1QAI2 36841877
    664 8de9:B (3.4) BS04 K ? GO:0005267 ... F1QAI2 36841877
    665 8k1j:A (3.0) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    666 8k1j:A (3.0) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    667 8k1j:A (3.0) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    668 8k1j:A (3.0) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    669 8k1j:B (3.0) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    670 8k1j:B (3.0) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    671 8k1j:B (3.0) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    672 8k1j:B (3.0) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    673 8k1q:A (3.68) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    674 8k1q:A (3.68) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    675 8k1q:B (3.68) BS01 K ? GO:0005267 ... Q9NPC2 38630723
    676 8k1q:B (3.68) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    677 8k1v:A (3.48) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    678 8k1v:A (3.48) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    679 8k1v:A (3.48) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    680 8k1v:A (3.48) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    681 8k1v:B (3.48) BS01 K ? GO:0005267 ... Q9NPC2 38630723
    682 8k1v:B (3.48) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    683 8k1v:B (3.48) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    684 8k1v:B (3.48) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    685 8k1z:A (3.41) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    686 8k1z:A (3.41) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    687 8k1z:A (3.41) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    688 8k1z:A (3.41) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    689 8k1z:B (3.41) BS01 K ? GO:0005267 ... Q9NPC2 38630723
    690 8k1z:B (3.41) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    691 8k1z:B (3.41) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    692 8k1z:B (3.41) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    693 8qz1:A (3.588) BS01 K ? N/A P57789 38755204
    694 8qz1:A (3.588) BS02 K ? N/A P57789 38755204
    695 8qz1:A (3.588) BS03 K ? N/A P57789 38755204
    696 8qz1:B (3.588) BS01 K ? N/A P57789 38755204
    697 8qz1:B (3.588) BS02 K ? N/A P57789 38755204
    698 8qz1:B (3.588) BS03 K ? N/A P57789 38755204
    699 8qz2:A (3.5) BS01 K ? N/A P57789 38755204
    700 8qz2:A (3.5) BS02 K ? N/A P57789 38755204
    701 8qz2:A (3.5) BS03 K ? N/A P57789 38755204
    702 8qz2:A (3.5) BS04 K ? N/A P57789 38755204
    703 8qz2:B (3.5) BS01 K ? N/A P57789 38755204
    704 8qz2:B (3.5) BS02 K ? N/A P57789 38755204
    705 8qz2:B (3.5) BS03 K ? N/A P57789 38755204
    706 8qz2:B (3.5) BS04 K ? N/A P57789 38755204
    707 8qz3:A (2.4) BS01 K ? N/A P57789 38755204
    708 8qz3:A (2.4) BS02 K ? N/A P57789 38755204
    709 8qz3:A (2.4) BS03 K ? N/A P57789 38755204
    710 8qz3:A (2.4) BS04 K ? N/A P57789 38755204
    711 8qz3:A (2.4) BS05 K ? N/A P57789 38755204
    712 8qz3:B (2.4) BS01 K ? N/A P57789 38755204
    713 8qz3:B (2.4) BS02 K ? N/A P57789 38755204
    714 8qz3:B (2.4) BS03 K ? N/A P57789 38755204
    715 8qz3:B (2.4) BS04 K ? N/A P57789 38755204
    716 8w9o:A (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    717 8w9o:A (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    718 8w9o:B (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    719 8w9o:B (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    720 8w9v:A (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    721 8w9v:A (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    722 8w9v:A (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    723 8w9v:B (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    724 8w9v:B (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    725 8w9v:B (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    726 8wgr:A (2.75) BS03 K N/A GO:0003779 ... P23975 39048818
    727 9etn:A (1.584) BS07 K N/A GO:0005515 ... Q8R555 39029889
    728 9etn:A (1.584) BS08 K N/A GO:0005515 ... Q8R555 39029889
    729 9etn:A (1.584) BS09 K N/A GO:0005515 ... Q8R555 39029889
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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