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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 729 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3um7:B (3.31) BS02 K ? GO:0005267 ... Q9NYG8 22282805
    202 3um7:B (3.31) BS03 K ? GO:0005267 ... Q9NYG8 22282805
    203 3um7:B (3.31) BS04 K ? GO:0005267 ... Q9NYG8 22282805
    204 3zd8:A (2.0) BS01 K 3.1.-.- GO:0000287 ... Q8X6R9 23821668
    205 3zd8:B (2.0) BS01 K 3.1.-.- GO:0000287 ... Q8X6R9 23821668
    206 3zd9:A (2.0) BS01 K 3.1.-.- GO:0000287 ... Q8X6R9 23821668
    207 3zda:A (1.5) BS02 K 3.1.-.- GO:0000287 ... Q8X6R9 23821668
    208 3zdb:A (1.47) BS02 K 3.1.-.- GO:0000287 ... Q8X6R9 23821668
    209 3zdc:A (1.53) BS02 K 3.1.-.- GO:0000287 ... Q8X6R9 23821668
    210 3zdd:A (1.5) BS02 K 3.1.-.- GO:0000287 ... Q8X6R9 23821668
    211 4b7v:A (1.73) BS01 K 2.3.1.179 GO:0004315 ... G3XDA2 26249693
    212 4b7v:B (1.73) BS01 K 2.3.1.179 GO:0004315 ... G3XDA2 26249693
    213 4bw5:A (3.2) BS01 K ? GO:0005267 ... P57789 25766236
    214 4bw5:A (3.2) BS02 K ? GO:0005267 ... P57789 25766236
    215 4bw5:A (3.2) BS03 K ? GO:0005267 ... P57789 25766236
    216 4bw5:A (3.2) BS04 K ? GO:0005267 ... P57789 25766236
    217 4bw5:B (3.2) BS01 K ? GO:0005267 ... P57789 25766236
    218 4bw5:B (3.2) BS02 K ? GO:0005267 ... P57789 25766236
    219 4bw5:B (3.2) BS03 K ? GO:0005267 ... P57789 25766236
    220 4bw5:B (3.2) BS04 K ? GO:0005267 ... P57789 25766236
    221 4bw5:C (3.2) BS01 K ? GO:0005267 ... P57789 25766236
    222 4bw5:C (3.2) BS02 K ? GO:0005267 ... P57789 25766236
    223 4bw5:C (3.2) BS03 K ? GO:0005267 ... P57789 25766236
    224 4bw5:C (3.2) BS04 K ? GO:0005267 ... P57789 25766236
    225 4bw5:D (3.2) BS01 K ? GO:0005267 ... P57789 25766236
    226 4bw5:D (3.2) BS02 K ? GO:0005267 ... P57789 25766236
    227 4bw5:D (3.2) BS03 K ? GO:0005267 ... P57789 25766236
    228 4bw5:D (3.2) BS04 K ? GO:0005267 ... P57789 25766236
    229 4chv:D (7.0) BS01 K ? GO:0005216 ... Q98GN8 24469021
    230 4chw:D (7.0) BS01 K ? GO:0005216 ... Q98GN8 24469021
    231 4d7n:A (1.76) BS02 K N/A GO:0003677 ... N/A 25432019
    232 4h5i:A (1.36) BS01 K ? GO:0005085 ... P11655 23109340
    233 4h5i:A (1.36) BS02 K ? GO:0005085 ... P11655 23109340
    234 4h5i:B (1.36) BS01 K ? GO:0005085 ... P11655 23109340
    235 4h5i:B (1.36) BS02 K ? GO:0005085 ... P11655 23109340
    236 4h5j:A (2.601) BS01 K ? GO:0005085 ... P11655 23109340
    237 4h5j:A (2.601) BS02 K ? GO:0005085 ... P11655 23109340
    238 4h5j:B (2.601) BS01 K ? GO:0005085 ... P11655 23109340
    239 4h5j:B (2.601) BS02 K ? GO:0005085 ... P11655 23109340
    240 4h5j:B (2.601) BS03 K ? GO:0005085 ... P11655 23109340
    241 4j7c:I (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    242 4j7c:J (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    243 4j7c:K (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    244 4j7c:L (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    245 4jay:A (2.23) BS03 K 1.3.1.98 GO:0005737 ... Q9HZM7 23805286
    246 4jay:B (2.23) BS01 K 1.3.1.98 GO:0005737 ... Q9HZM7 23805286
    247 4jay:C (2.23) BS01 K 1.3.1.98 GO:0005737 ... Q9HZM7 23805286
    248 4jay:D (2.23) BS01 K 1.3.1.98 GO:0005737 ... Q9HZM7 23805286
    249 4jb6:A (2.4) BS01 K 2.3.1.179 GO:0004315 ... O54440 26249693
    250 4jb6:B (2.4) BS01 K 2.3.1.179 GO:0004315 ... O54440 26249693
    251 4jpf:A (1.67) BS02 K 2.3.1.179 GO:0004315 ... G3XDA2 26249693
    252 4m3p:A (1.895) BS02 K 2.1.1.5 GO:0005634 ... Q93088 24895213
    253 4m3p:B (1.895) BS02 K 2.1.1.5 GO:0005634 ... Q93088 24895213
    254 4m3p:C (1.895) BS02 K 2.1.1.5 GO:0005634 ... Q93088 24895213
    255 4m3p:D (1.895) BS02 K 2.1.1.5 GO:0005634 ... Q93088 24895213
    256 4pu6:A (2.3) BS01 K 3.5.1.1 GO:0016787 ... V7CU13 25004963
    257 4pu6:A (2.3) BS02 K 3.5.1.1 GO:0016787 ... V7CU13 25004963
    258 4pu6:C (2.3) BS01 K 3.5.1.1 GO:0016787 ... V7CU13 25004963
    259 4pu6:C (2.3) BS02 K 3.5.1.1 GO:0016787 ... V7CU13 25004963
    260 4pv2:A (1.79) BS03 K 3.5.1.1 GO:0016787 ... V7CU13 25004963
    261 4pv2:A (1.79) BS04 K 3.5.1.1 GO:0016787 ... V7CU13 25004963
    262 4pv2:C (1.79) BS03 K 3.5.1.1 GO:0016787 ... V7CU13 25004963
    263 4pv2:C (1.79) BS04 K 3.5.1.1 GO:0016787 ... V7CU13 25004963
    264 4rue:A (3.3) BS01 K ? GO:0005267 ... Q9NYG8 25500157
    265 4rue:A (3.3) BS02 K ? GO:0005267 ... Q9NYG8 25500157
    266 4rue:A (3.3) BS03 K ? GO:0005267 ... Q9NYG8 25500157
    267 4rue:A (3.3) BS04 K ? GO:0005267 ... Q9NYG8 25500157
    268 4rue:B (3.3) BS01 K ? GO:0005267 ... Q9NYG8 25500157
    269 4rue:B (3.3) BS02 K ? GO:0005267 ... Q9NYG8 25500157
    270 4rue:B (3.3) BS03 K ? GO:0005267 ... Q9NYG8 25500157
    271 4rue:B (3.3) BS04 K ? GO:0005267 ... Q9NYG8 25500157
    272 4ruf:A (3.4) BS01 K ? GO:0005267 ... Q9NYG8 25500157
    273 4ruf:A (3.4) BS02 K ? GO:0005267 ... Q9NYG8 25500157
    274 4ruf:A (3.4) BS03 K ? GO:0005267 ... Q9NYG8 25500157
    275 4ruf:A (3.4) BS04 K ? GO:0005267 ... Q9NYG8 25500157
    276 4ruf:B (3.4) BS01 K ? GO:0005267 ... Q9NYG8 25500157
    277 4ruf:B (3.4) BS02 K ? GO:0005267 ... Q9NYG8 25500157
    278 4ruf:B (3.4) BS03 K ? GO:0005267 ... Q9NYG8 25500157
    279 4ruf:B (3.4) BS04 K ? GO:0005267 ... Q9NYG8 25500157
    280 4umo:A (3.0) BS01 K ? GO:0005249 ... P51787 25441029
    281 4umo:A (3.0) BS02 K ? GO:0005249 ... P51787 25441029
    282 4umo:A (3.0) BS03 K ? GO:0005249 ... P51787 25441029
    283 4umo:B (3.0) BS01 K ? GO:0005249 ... P51787 25441029
    284 4umo:B (3.0) BS02 K ? GO:0005249 ... P51787 25441029
    285 4umo:B (3.0) BS03 K ? GO:0005249 ... P51787 25441029
    286 4xdj:A (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    287 4xdj:A (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    288 4xdj:A (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    289 4xdj:B (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    290 4xdj:B (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    291 4xdj:B (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    292 4xdj:C (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    293 4xdj:C (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    294 4xdj:C (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    295 4xdj:D (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    296 4xdj:D (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    297 4xdj:D (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    298 4xdk:A (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    299 4xdk:A (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    300 4xdk:A (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    301 4xdk:B (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    302 4xdk:B (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    303 4xdk:B (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    304 4xdk:C (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    305 4xdk:C (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    306 4xdk:C (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    307 4xdk:D (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    308 4xdk:D (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    309 4xdk:D (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    310 4xdl:A (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    311 4xdl:A (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    312 4xdl:A (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    313 4xdl:B (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    314 4xdl:B (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    315 4xdl:B (3.5) BS04 K ? GO:0005267 ... P57789 25766236
    316 4xdl:C (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    317 4xdl:C (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    318 4xdl:C (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    319 4xdl:D (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    320 4xdl:D (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    321 4xdl:D (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    322 5mrw:A (2.9) BS02 K ? GO:0005515 ... P03959 28636601
    323 5mrw:E (2.9) BS02 K ? GO:0005515 ... P03959 28636601
    324 5mrw:I (2.9) BS02 K ? GO:0005515 ... P03959 28636601
    325 5yew:A (3.2) BS03 K 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    326 5yew:B (3.2) BS03 K 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    327 5yew:C (3.2) BS03 K 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    328 6cq6:A (3.1) BS01 K ? GO:0005267 ... P97438 28693035
    329 6cq6:A (3.1) BS02 K ? GO:0005267 ... P97438 28693035
    330 6cq6:A (3.1) BS03 K ? GO:0005267 ... P97438 28693035
    331 6cq6:A (3.1) BS04 K ? GO:0005267 ... P97438 28693035
    332 6cq6:B (3.1) BS01 K ? GO:0005267 ... P97438 28693035
    333 6cq6:B (3.1) BS02 K ? GO:0005267 ... P97438 28693035
    334 6cq6:B (3.1) BS03 K ? GO:0005267 ... P97438 28693035
    335 6cq6:B (3.1) BS04 K ? GO:0005267 ... P97438 28693035
    336 6cq8:A (3.0) BS01 K ? GO:0005267 ... P97438 28693035
    337 6cq8:A (3.0) BS02 K ? GO:0005267 ... P97438 28693035
    338 6cq8:A (3.0) BS05 K ? GO:0005267 ... P97438 28693035
    339 6cq8:A (3.0) BS06 K ? GO:0005267 ... P97438 28693035
    340 6cq8:B (3.0) BS01 K ? GO:0005267 ... P97438 28693035
    341 6cq8:B (3.0) BS02 K ? GO:0005267 ... P97438 28693035
    342 6cq8:B (3.0) BS03 K ? GO:0005267 ... P97438 28693035
    343 6cq8:B (3.0) BS04 K ? GO:0005267 ... P97438 28693035
    344 6cq9:A (2.8) BS01 K ? GO:0005267 ... P97438 28693035
    345 6cq9:A (2.8) BS02 K ? GO:0005267 ... P97438 28693035
    346 6cq9:A (2.8) BS05 K ? GO:0005267 ... P97438 28693035
    347 6cq9:A (2.8) BS06 K ? GO:0005267 ... P97438 28693035
    348 6cq9:B (2.8) BS01 K ? GO:0005267 ... P97438 28693035
    349 6cq9:B (2.8) BS02 K ? GO:0005267 ... P97438 28693035
    350 6cq9:B (2.8) BS03 K ? GO:0005267 ... P97438 28693035
    351 6cq9:B (2.8) BS04 K ? GO:0005267 ... P97438 28693035
    352 6dwo:A (2.15) BS02 K 3.2.1.- GO:0000224 ... Q832K9 31552675
    353 6dwo:B (2.15) BS02 K 3.2.1.- GO:0000224 ... Q832K9 31552675
    354 6dwo:C (2.15) BS02 K 3.2.1.- GO:0000224 ... Q832K9 31552675
    355 6dwo:D (2.15) BS02 K 3.2.1.- GO:0000224 ... Q832K9 31552675
    356 6dz1:B (2.26) BS01 K N/A GO:0005267 ... N/A 30382100
    357 6f3m:A (1.6) BS03 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    358 6f3m:B (1.6) BS04 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    359 6f3m:C (1.6) BS03 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    360 6f3m:D (1.6) BS04 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    361 6f3n:A (1.85) BS01 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    362 6f3n:B (1.85) BS02 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    363 6f3n:C (1.85) BS01 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    364 6f3n:D (1.85) BS02 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    365 6f3o:A (1.75) BS01 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    366 6f3o:B (1.75) BS02 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    367 6f3o:C (1.75) BS01 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    368 6f3o:D (1.75) BS02 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    369 6f3p:A (1.35) BS03 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    370 6f3p:C (1.35) BS03 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    371 6gjt:A (1.98) BS01 K ? N/A P0CE18 30002845
    372 6gjt:A (1.98) BS02 K ? N/A P0CE18 30002845
    373 6gjt:A (1.98) BS03 K ? N/A P0CE18 30002845
    374 6gjt:B (1.98) BS01 K ? N/A P0CE18 30002845
    375 6gjt:B (1.98) BS02 K ? N/A P0CE18 30002845
    376 6gjt:C (1.98) BS01 K ? N/A P0CE18 30002845
    377 6gjt:D (1.98) BS01 K ? N/A P0CE18 30002845
    378 6gjt:D (1.98) BS02 K ? N/A P0CE18 30002845
    379 6gjt:E (1.98) BS01 K ? N/A P0CE18 30002845
    380 6gjt:F (1.98) BS01 K ? N/A P0CE18 30002845
    381 6i4d:A (1.24) BS03 K 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    382 6i4f:A (1.5) BS03 K 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    383 6i4g:A (2.0) BS02 K 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    384 6i4g:B (2.0) BS02 K 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    385 6i4i:A (1.9) BS03 K 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    386 6j6t:A (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    387 6j6t:B (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    388 6j6t:C (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    389 6j6t:D (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    390 6kkr:A (2.9) BS04 K ? GO:0005515 ... Q9UP95 31649201
    391 6kkr:B (2.9) BS05 K ? GO:0005515 ... Q9UP95 31649201
    392 6kkt:A (2.9) BS04 K ? GO:0005515 ... Q9UP95 31649201
    393 6kkt:B (2.9) BS05 K ? GO:0005515 ... Q9UP95 31649201
    394 6l32:A (2.3) BS03 K 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    395 6l32:A (2.3) BS04 K 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    396 6l5g:A (2.5) BS03 K 1.11.1.7 GO:0004601 ... P80025 33427997
    397 6l5g:A (2.5) BS04 K 1.11.1.7 GO:0004601 ... P80025 33427997
    398 6nph:A (2.9) BS01 K ? GO:0006811 ... A0A0G2KTI4 31367042
    399 6nph:B (2.9) BS01 K ? GO:0006811 ... A0A0G2KTI4 31367042
    400 6npl:A (2.9) BS01 K ? GO:0006811 ... A0A0G2KTI4 31367042
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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