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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2pov:A (1.6) BS02 I7B 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17540563 MOAD: Ki=75nM
    PDBbind: -logKd/Ki=7.12, Ki=75nM
    BindingDB: Ki=75nM, IC50=90nM
    2 3l14:A (1.22) BS02 I7B 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=75nM, IC50=90nM
    3 7nml:B (1.43) BS01 I7B ? GO:0002317 ... P09382 N/A
    4 8akg:A (1.82) BS03 I7B 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    5 8akg:B (1.82) BS03 I7B 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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