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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5s48:A (1.074) BS01 HRZ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    2 5s48:B (1.074) BS01 HRZ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    3 6qa4:A (1.6) BS01 HRZ 2.7.11.24 GO:0000165 ... P28482 30878562
    4 6qa4:A (1.6) BS02 HRZ 2.7.11.24 GO:0000165 ... P28482 30878562
    5 6qa4:A (1.6) BS03 HRZ 2.7.11.24 GO:0000165 ... P28482 30878562
    6 6qa4:A (1.6) BS04 HRZ 2.7.11.24 GO:0000165 ... P28482 30878562
    7 6tx4:A (1.06) BS01 HRZ 5.2.1.8 GO:0003755 ... Q13451 32420743 MOAD: Kd=1.3nM
    8 6tx4:A (1.06) BS02 HRZ 5.2.1.8 GO:0003755 ... Q13451 32420743 MOAD: Kd=1.3nM
    9 7pyb:A (2.03) BS01 HRZ 2.7.7.15 GO:0003824 ... Q8IEE9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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