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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dm7:A (2.1) BS02 HRG 1.14.13.39 GO:0004517 ... P29473 N/A
    2 1dm7:B (2.1) BS03 HRG 1.14.13.39 GO:0004517 ... P29473 N/A
    3 4m2e:C (2.06) BS02 HRG 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    4 4m2e:D (2.06) BS02 HRG 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    5 5ijr:A (1.52) BS01 HRG ? N/A O14786 29430837 PDBbind: -logKd/Ki=3.20, Kd=637uM
    6 6dax:A (1.7) BS02 HRG 1.14.11.41 GO:0005506 ... Q6WZB0 29708749
    7 6db2:A (1.7) BS01 HRG 1.14.11.41 GO:0005506 ... Q6WZB0 29708749
    8 7y5f:A (1.52) BS02 HRG ? GO:0005506 ... A6YEH4 36176888
    9 7y5f:B (1.52) BS02 HRG ? GO:0005506 ... A6YEH4 36176888
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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