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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ad4:A (2.4) BS01 HH2 2.5.1.15 GO:0004156 ... O05701 9149138
    2 1rao:A (1.56) BS02 HH2 2.7.6.3 GO:0000287 ... P26281 15016362
    3 1rb0:A (1.35) BS01 HH2 2.7.6.3 GO:0000287 ... P26281 15016362
    4 1tww:A (2.5) BS01 HH2 2.5.1.15 GO:0004156 ... Q81VW8 15341734
    5 1tww:B (2.5) BS01 HH2 2.5.1.15 GO:0004156 ... Q81VW8 15341734
    6 2dzb:A (1.9) BS01 HH2 2.5.1.15 GO:0004156 ... Q5SLV2 N/A
    7 2dzb:B (1.9) BS01 HH2 2.5.1.15 GO:0004156 ... Q5SLV2 N/A
    8 3tzf:A (2.1) BS01 HH2 2.5.1.15 GO:0004156 ... A0A2S9PLG4 22383850
    9 3tzf:B (2.1) BS01 HH2 2.5.1.15 GO:0004156 ... A0A2S9PLG4 22383850
    10 5z79:A (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    11 5z79:B (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    12 5z79:C (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    13 5z79:D (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    14 5z79:E (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    15 5z79:F (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    16 8d5g:A (2.78) BS01 HH2 N/A GO:0004156 ... N/A N/A
    17 8d5g:B (2.78) BS01 HH2 N/A GO:0004156 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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