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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11201 6pmy:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11202 6pmy:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11203 6pmz:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11204 6pmz:B (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11205 6pn0:A (2.229) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11206 6pn0:B (2.229) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11207 6pn1:A (2.196) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11208 6pn1:B (2.196) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11209 6pn2:A (1.877) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11210 6pn2:B (1.877) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11211 6pn3:A (1.8) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11212 6pn3:B (1.8) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11213 6pn4:A (1.898) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11214 6pn4:B (1.898) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11215 6pn5:A (1.699) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11216 6pn5:B (1.699) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11217 6pn6:A (1.843) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11218 6pn6:B (1.843) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11219 6pn7:A (1.878) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11220 6pn7:B (1.878) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11221 6pn8:A (1.838) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11222 6pn8:B (1.838) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11223 6pn9:A (1.84) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11224 6pn9:B (1.84) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 32302123
    11225 6pna:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11226 6pna:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11227 6pnb:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11228 6pnb:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11229 6pnc:A (2.15) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11230 6pnc:B (2.15) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11231 6pnd:A (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11232 6pnd:B (2.4) BS02 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11233 6pne:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11234 6pne:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11235 6pnf:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11236 6pnf:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11237 6png:A (1.775) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11238 6png:B (1.775) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11239 6pnh:A (1.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11240 6pnh:B (1.85) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11241 6po0:A (1.75) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    11242 6po0:B (1.75) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    11243 6po0:C (1.75) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    11244 6po0:D (1.75) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    11245 6po5:A (1.82) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11246 6po5:B (1.82) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11247 6po7:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11248 6po7:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11249 6po8:A (1.898) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11250 6po8:B (1.898) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11251 6po9:A (1.808) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11252 6po9:B (1.808) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11253 6poa:A (1.809) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11254 6poa:B (1.809) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11255 6pob:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11256 6pob:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11257 6poc:A (1.998) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11258 6poc:B (1.998) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11259 6pot:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11260 6pot:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 32302123
    11261 6pou:A (2.194) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11262 6pou:B (2.194) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11263 6pou:C (2.194) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11264 6pou:D (2.194) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11265 6pou:E (2.194) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11266 6pou:F (2.194) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11267 6pov:A (2.047) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11268 6pov:B (2.047) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11269 6pov:C (2.047) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11270 6pov:D (2.047) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11271 6pow:A (2.15) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11272 6pow:B (2.15) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11273 6pow:C (2.15) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11274 6pow:D (2.15) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11275 6pox:A (2.197) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11276 6pox:B (2.197) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11277 6pox:C (2.197) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11278 6pox:D (2.197) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11279 6poy:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11280 6poy:B (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11281 6poy:C (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11282 6poy:D (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11283 6poz:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11284 6poz:B (2.2) BS04 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11285 6poz:C (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11286 6poz:D (2.2) BS04 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11287 6pp0:A (1.97) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11288 6pp0:B (1.97) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11289 6pp0:C (1.97) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11290 6pp0:D (1.97) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11291 6pp1:A (1.76) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11292 6pp1:B (1.76) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11293 6pp1:C (1.76) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11294 6pp1:D (1.76) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11295 6pp2:A (2.02) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11296 6pp2:B (2.02) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11297 6pp2:C (2.02) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11298 6pp2:D (2.02) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11299 6pp3:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11300 6pp3:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11301 6pp3:C (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11302 6pp3:D (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11303 6pp4:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11304 6pp4:B (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11305 6pp4:C (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11306 6pp4:D (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 32302123
    11307 6pq6:A (1.658) BS02 HEM ? GO:0004497 ... Q2IU02 31759265
    11308 6pqd:A (1.89) BS01 HEM ? GO:0004497 ... Q2IU02 31759265
    11309 6pqs:A (1.6) BS01 HEM ? GO:0004497 ... Q2IU02 31759265
    11310 6pqw:A (1.679) BS02 HEM ? GO:0004497 ... Q2IU02 31759265
    11311 6prc:C (2.3) BS01 HEM ? GO:0005506 ... P07173 10024457
    11312 6prc:C (2.3) BS02 HEM ? GO:0005506 ... P07173 10024457
    11313 6prc:C (2.3) BS03 HEM ? GO:0005506 ... P07173 10024457
    11314 6prc:C (2.3) BS04 HEM ? GO:0005506 ... P07173 10024457
    11315 6prr:A (1.67) BS02 HEM ? GO:0004497 ... Q2IU02 31759265
    11316 6prs:A (2.373) BS01 HEM ? GO:0004497 ... Q2IU02 31759265
    11317 6pt7:A (2.15) BS02 HEM ? GO:0000166 ... A0A031LXI5 N/A
    11318 6pu7:A (2.43) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31749906
    11319 6pu7:B (2.43) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31749906
    11320 6pyy:A (2.4) BS01 HEM 1.13.11.11 GO:0004833 ... P48775 31682426
    11321 6pyy:B (2.4) BS02 HEM 1.13.11.11 GO:0004833 ... P48775 31682426
    11322 6pyy:C (2.4) BS01 HEM 1.13.11.11 GO:0004833 ... P48775 31682426
    11323 6pyy:D (2.4) BS02 HEM 1.13.11.11 GO:0004833 ... P48775 31682426
    11324 6pyz:A (2.02) BS01 HEM 1.13.11.11 GO:0004833 ... P48775 31682426
    11325 6pyz:B (2.02) BS02 HEM 1.13.11.11 GO:0004833 ... P48775 31682426
    11326 6pyz:C (2.02) BS01 HEM 1.13.11.11 GO:0004833 ... P48775 31682426
    11327 6pyz:D (2.02) BS02 HEM 1.13.11.11 GO:0004833 ... P48775 31682426
    11328 6pz1:A (2.65) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31682426
    11329 6pz1:B (2.65) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31682426
    11330 6q2c:A (1.8) BS01 HEM ? GO:0004497 ... L8GJB3 33008918
    11331 6q2c:B (1.8) BS01 HEM ? GO:0004497 ... L8GJB3 33008918
    11332 6q2t:A (2.8) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 31663733
    11333 6q2t:B (2.8) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 31663733
    11334 6q31:A (1.78) BS01 HEM N/A GO:0004601 ... N/A 31316799
    11335 6q31:B (1.78) BS01 HEM N/A GO:0004601 ... N/A 31316799
    11336 6q34:A (1.82) BS01 HEM N/A GO:0004601 ... N/A 31316799
    11337 6q34:B (1.82) BS01 HEM N/A GO:0004601 ... N/A 31316799
    11338 6q3d:A (1.93) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31316799
    11339 6q3d:B (1.93) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31316799
    11340 6q3e:A (2.03) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31316799
    11341 6q3e:B (2.03) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31316799
    11342 6q6p:A (3.0) BS01 HEM 1.15.1.1 GO:0005344 ... A0A192X9K5 32913582
    11343 6q6p:B (3.0) BS01 HEM 1.15.1.1 GO:0005344 ... A0A192X9K5 32913582
    11344 6q9e:b1 (3.9) BS01 HEM ? GO:0005739 ... P24959 31492636
    11345 6q9e:b1 (3.9) BS02 HEM ? GO:0005739 ... P24959 31492636
    11346 6q9e:b2 (3.9) BS01 HEM ? GO:0005739 ... P24959 31492636
    11347 6q9e:b2 (3.9) BS02 HEM ? GO:0005739 ... P24959 31492636
    11348 6qbx:b1 (4.2) BS01 HEM ? GO:0005739 ... P24959 31492636
    11349 6qbx:b1 (4.2) BS02 HEM ? GO:0005739 ... P24959 31492636
    11350 6qbx:b2 (4.2) BS01 HEM ? GO:0005739 ... P24959 31492636
    11351 6qbx:b2 (4.2) BS02 HEM ? GO:0005739 ... P24959 31492636
    11352 6qc2:b1 (4.2) BS01 HEM ? GO:0005739 ... P24959 31492636
    11353 6qc2:b1 (4.2) BS02 HEM ? GO:0005739 ... P24959 31492636
    11354 6qc2:b2 (4.2) BS01 HEM ? GO:0005739 ... P24959 31492636
    11355 6qc2:b2 (4.2) BS02 HEM ? GO:0005739 ... P24959 31492636
    11356 6qc3:b1 (4.2) BS01 HEM ? GO:0005739 ... P24959 31492636
    11357 6qc3:b1 (4.2) BS02 HEM ? GO:0005739 ... P24959 31492636
    11358 6qc3:b2 (4.2) BS01 HEM ? GO:0005739 ... P24959 31492636
    11359 6qc3:b2 (4.2) BS02 HEM ? GO:0005739 ... P24959 31492636
    11360 6qc4:b1 (4.6) BS01 HEM ? GO:0005739 ... P24959 31492636
    11361 6qc4:b1 (4.6) BS02 HEM ? GO:0005739 ... P24959 31492636
    11362 6qc4:b2 (4.6) BS01 HEM ? GO:0005739 ... P24959 31492636
    11363 6qc4:b2 (4.6) BS02 HEM ? GO:0005739 ... P24959 31492636
    11364 6qq5:A (3.9) BS01 HEM N/A GO:0004129 ... N/A 31489376
    11365 6qq5:A (3.9) BS02 HEM N/A GO:0004129 ... N/A 31489376
    11366 6qq5:B (3.9) BS01 HEM N/A GO:0004129 ... N/A 31489376
    11367 6qq5:B (3.9) BS02 HEM N/A GO:0004129 ... N/A 31489376
    11368 6qq6:A (3.3) BS01 HEM N/A GO:0004129 ... N/A 31489376
    11369 6qq6:A (3.3) BS02 HEM N/A GO:0004129 ... N/A 31489376
    11370 6qq6:B (3.3) BS01 HEM N/A GO:0004129 ... N/A 31489376
    11371 6qq6:B (3.3) BS02 HEM N/A GO:0004129 ... N/A 31489376
    11372 6qzo:A (2.4) BS01 HEM ? GO:0004601 ... A0A0A0BZU2 30934796
    11373 6qzo:B (2.4) BS01 HEM ? GO:0004601 ... A0A0A0BZU2 30934796
    11374 6qzo:C (2.4) BS01 HEM ? GO:0004601 ... A0A0A0BZU2 30934796
    11375 6qzo:D (2.4) BS01 HEM ? GO:0004601 ... A0A0A0BZU2 30934796
    11376 6qzo:E (2.4) BS01 HEM ? GO:0004601 ... A0A0A0BZU2 30934796
    11377 6qzo:F (2.4) BS01 HEM ? GO:0004601 ... A0A0A0BZU2 30934796
    11378 6qzo:G (2.4) BS01 HEM ? GO:0004601 ... A0A0A0BZU2 30934796
    11379 6qzo:H (2.4) BS01 HEM ? GO:0004601 ... A0A0A0BZU2 30934796
    11380 6r1q:A (1.95) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 N/A
    11381 6r2o:A (2.46) BS01 HEM ? GO:0004601 ... P01958 32005876
    11382 6r2o:B (2.46) BS01 HEM ? GO:0004601 ... P02062 32005876
    11383 6r2o:C (2.46) BS01 HEM ? GO:0004601 ... P01958 32005876
    11384 6r2o:D (2.46) BS01 HEM ? GO:0004601 ... P02062 32005876
    11385 6r3w:A (1.2) BS01 HEM 5.99.-.- GO:0016853 ... P9WFG7 32295384
    11386 6r3y:A (1.6) BS01 HEM 5.99.-.- GO:0016853 ... P9WFG7 32295384
    11387 6r63:A (2.894) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31525930
    11388 6r63:B (2.894) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31525930
    11389 6ra6:A (2.3) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 32034988
    11390 6rjn:A (2.295) BS01 HEM 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    11391 6rjn:B (2.295) BS01 HEM 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    11392 6rjn:C (2.295) BS01 HEM 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    11393 6rjn:D (2.295) BS01 HEM 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    11394 6rjr:A (1.895) BS01 HEM 1.11.1.6 GO:0000166 ... Q6CR58 31238127
    11395 6rjr:B (1.895) BS01 HEM 1.11.1.6 GO:0000166 ... Q6CR58 31238127
    11396 6rjr:C (1.895) BS01 HEM 1.11.1.6 GO:0000166 ... Q6CR58 31238127
    11397 6rjr:D (1.895) BS01 HEM 1.11.1.6 GO:0000166 ... Q6CR58 31238127
    11398 6rk0:A (0.99) BS01 HEM ? GO:0000166 ... C1DK98 31043481
    11399 6rk0:A (0.99) BS04 HEM ? GO:0000166 ... C1DK98 31043481
    11400 6rk0:B (0.99) BS01 HEM ? GO:0000166 ... C1DK98 31043481

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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