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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10601 6jqq:A (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... W1F4G9 N/A
    10602 6jqq:B (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... W1F4G9 N/A
    10603 6jqq:C (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... W1F4G9 N/A
    10604 6jqq:D (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... W1F4G9 N/A
    10605 6js8:A (1.36) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 32157795
    10606 6js8:B (1.36) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 32157795
    10607 6js9:A (2.0) BS01 HEM ? N/A Q8NTB9 31670736
    10608 6js9:A (2.0) BS02 HEM ? N/A Q8NTB9 31670736
    10609 6js9:B (2.0) BS01 HEM ? N/A Q8NTB9 31670736
    10610 6jsa:A (1.3) BS01 HEM ? N/A Q8NTB9 31670736
    10611 6jsb:A (1.699) BS01 HEM ? N/A Q8NTB5 31670736
    10612 6jsb:B (1.699) BS01 HEM ? N/A Q8NTB5 31670736
    10613 6jsc:A (1.4) BS01 HEM ? N/A Q8NTB9 31670736
    10614 6jsc:B (1.4) BS01 HEM ? N/A Q8NTB9 31670736
    10615 6jt0:B (4.0) BS01 HEM 4.6.1.2 GO:0004016 ... Q02153 31514202
    10616 6jt1:B (3.9) BS01 HEM 4.6.1.2 GO:0004016 ... Q02153 31514202
    10617 6jt2:B (3.8) BS02 HEM 4.6.1.2 GO:0004016 ... Q02153 31514202
    10618 6jt6:A (2.0) BS01 HEM ? N/A A8P0V4 31604769
    10619 6k3o:A (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10620 6k3o:B (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10621 6k3o:C (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10622 6k3o:D (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10623 6k3o:E (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10624 6k3o:F (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10625 6k3o:G (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10626 6k3o:H (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10627 6k3o:I (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10628 6k3o:J (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10629 6k3o:K (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10630 6k3o:L (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10631 6k3o:M (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10632 6k3o:N (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10633 6k3o:O (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10634 6k3o:P (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10635 6k3o:Q (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10636 6k3o:R (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10637 6k3o:S (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10638 6k3o:T (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10639 6k3o:U (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10640 6k3o:V (3.4) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10641 6k3o:W (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10642 6k3o:X (3.4) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10643 6k3q:A (2.06) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    10644 6k3q:B (2.06) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    10645 6k43:A (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10646 6k43:B (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10647 6k43:C (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10648 6k43:D (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10649 6k43:E (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10650 6k43:F (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10651 6k43:G (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10652 6k43:H (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10653 6k43:I (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10654 6k43:J (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10655 6k43:K (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10656 6k43:L (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10657 6k43:M (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10658 6k43:N (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10659 6k43:O (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10660 6k43:P (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10661 6k43:Q (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10662 6k43:R (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10663 6k43:S (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10664 6k43:T (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10665 6k43:U (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10666 6k43:V (3.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10667 6k43:W (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10668 6k43:X (3.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10669 6k4m:A (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10670 6k4m:B (4.5) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10671 6k4m:C (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10672 6k4m:E (4.5) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10673 6k4m:F (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10674 6k4m:G (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10675 6k4m:H (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10676 6k4m:I (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10677 6k4m:K (4.5) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10678 6k4m:L (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10679 6k4m:M (4.5) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10680 6k4m:N (4.5) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10681 6k4m:O (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10682 6k4m:P (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10683 6k4m:Q (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10684 6k4m:R (4.5) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10685 6k4m:S (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10686 6k4m:T (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10687 6k4m:U (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10688 6k4m:V (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10689 6k4m:W (4.5) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10690 6k4m:X (4.5) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    10691 6k58:A (1.41) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 32157795
    10692 6k58:B (1.41) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 32157795
    10693 6ka9:A (1.4) BS01 HEM ? GO:0004601 ... P69905 32071219
    10694 6ka9:C (1.4) BS01 HEM ? GO:0004601 ... P69905 32071219
    10695 6ka9:E (1.4) BS01 HEM ? GO:0004601 ... P69905 32071219
    10696 6ka9:G (1.4) BS01 HEM ? GO:0004601 ... P69905 32071219
    10697 6kac:E (2.7) BS02 HEM ? GO:0005506 ... P48268 31768031
    10698 6kac:F (2.7) BS01 HEM ? GO:0005506 ... Q08363 31768031
    10699 6kac:e (2.7) BS02 HEM ? GO:0005506 ... P48268 31768031
    10700 6kac:f (2.7) BS01 HEM ? GO:0005506 ... Q08363 31768031
    10701 6kad:E (3.4) BS01 HEM ? GO:0005506 ... P48268 31768031
    10702 6kad:F (3.4) BS01 HEM ? GO:0005506 ... Q08363 31768031
    10703 6kad:e (3.4) BS01 HEM ? GO:0005506 ... P48268 31768031
    10704 6kad:f (3.4) BS01 HEM ? GO:0005506 ... Q08363 31768031
    10705 6kae:A (1.45) BS01 HEM ? GO:0004601 ... P69905 32071219
    10706 6kae:C (1.45) BS01 HEM ? GO:0004601 ... P69905 32071219
    10707 6kae:E (1.45) BS01 HEM ? GO:0004601 ... P69905 32071219
    10708 6kae:G (1.45) BS01 HEM ? GO:0004601 ... P69905 32071219
    10709 6kaf:E (3.73) BS01 HEM ? GO:0005506 ... P48268 31570614
    10710 6kaf:F (3.73) BS01 HEM ? GO:0005506 ... Q08363 31570614
    10711 6kaf:e (3.73) BS01 HEM ? GO:0005506 ... P48268 31570614
    10712 6kaf:f (3.73) BS01 HEM ? GO:0005506 ... Q08363 31570614
    10713 6kah:B (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10714 6kah:D (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10715 6kah:F (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10716 6kah:H (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10717 6kai:B (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10718 6kai:D (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10719 6kai:F (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10720 6kai:H (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10721 6kao:A (1.4) BS01 HEM ? GO:0004601 ... P69905 32071219
    10722 6kao:B (1.4) BS01 HEM ? GO:0004601 ... P68871 32071219
    10723 6kap:A (1.45) BS01 HEM ? GO:0004601 ... P69905 32071219
    10724 6kap:B (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    10725 6kaq:A (1.5) BS01 HEM ? GO:0004601 ... P69905 32071219
    10726 6kaq:B (1.5) BS01 HEM ? GO:0004601 ... P68871 32071219
    10727 6kar:A (1.6) BS01 HEM ? GO:0004601 ... P69905 32071219
    10728 6kar:B (1.6) BS01 HEM ? GO:0004601 ... P68871 32071219
    10729 6kas:A (1.65) BS01 HEM ? GO:0004601 ... P69905 32071219
    10730 6kas:B (1.65) BS01 HEM ? GO:0004601 ... P68871 32071219
    10731 6kas:C (1.65) BS01 HEM ? GO:0004601 ... P69905 32071219
    10732 6kas:D (1.65) BS01 HEM ? GO:0004601 ... P68871 32071219
    10733 6kat:A (1.7) BS01 HEM ? GO:0004601 ... P69905 32071219
    10734 6kat:B (1.7) BS01 HEM ? GO:0004601 ... P68871 32071219
    10735 6kat:C (1.7) BS01 HEM ? GO:0004601 ... P69905 32071219
    10736 6kat:D (1.7) BS01 HEM ? GO:0004601 ... P68871 32071219
    10737 6kau:A (1.6) BS01 HEM ? GO:0004601 ... P69905 32071219
    10738 6kau:B (1.6) BS01 HEM ? GO:0004601 ... P68871 32071219
    10739 6kau:C (1.6) BS01 HEM ? GO:0004601 ... P69905 32071219
    10740 6kau:D (1.6) BS01 HEM ? GO:0004601 ... P68871 32071219
    10741 6kav:A (1.7) BS01 HEM ? GO:0004601 ... P69905 32071219
    10742 6kav:B (1.7) BS01 HEM ? GO:0004601 ... P68871 32071219
    10743 6kav:C (1.7) BS01 HEM ? GO:0004601 ... P69905 32071219
    10744 6kav:D (1.7) BS01 HEM ? GO:0004601 ... P68871 32071219
    10745 6kbh:A (2.6) BS02 HEM ? GO:0000166 ... C7SFP5 N/A
    10746 6kfw:A (2.0) BS01 HEM ? GO:0004497 ... A0A290YXM6 33884733
    10747 6kls:B (3.3) BS01 HEM ? GO:0009055 ... O66459 31778296
    10748 6kls:B (3.3) BS02 HEM ? GO:0009055 ... O66459 31778296
    10749 6kls:E (3.3) BS02 HEM ? GO:0009055 ... O66459 31778296
    10750 6kls:E (3.3) BS03 HEM ? GO:0009055 ... O66459 31778296
    10751 6klv:B (3.2) BS02 HEM ? GO:0009055 ... O66459 31778296
    10752 6klv:B (3.2) BS03 HEM ? GO:0009055 ... O66459 31778296
    10753 6klv:E (3.2) BS02 HEM ? GO:0009055 ... O66459 31778296
    10754 6klv:E (3.2) BS03 HEM ? GO:0009055 ... O66459 31778296
    10755 6kmk:A (2.3) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    10756 6kmm:A (1.93) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10757 6kmm:B (1.93) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10758 6kmm:C (1.93) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10759 6kmm:D (1.93) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10760 6kmm:E (1.93) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10761 6kmm:F (1.93) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10762 6kmn:A (2.44) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10763 6kmn:B (2.44) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10764 6kmn:C (2.44) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10765 6kmn:D (2.44) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    10766 6kof:A (2.263) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31961685
    10767 6kof:B (2.263) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31961685
    10768 6kps:A (2.249) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31961685
    10769 6kps:B (2.249) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31961685
    10770 6krc:A (1.39) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    10771 6krf:A (1.86) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    10772 6kw7:A (3.02) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31961685
    10773 6kw7:B (3.02) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31961685
    10774 6ky7:A (2.27) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    10775 6kye:A (2.28) BS01 HEM ? GO:0004601 ... P69905 31840728
    10776 6kye:B (2.28) BS01 HEM ? GO:0004601 ... P68871 31840728
    10777 6kye:C (2.28) BS01 HEM ? GO:0004601 ... P69905 31840728
    10778 6kye:D (2.28) BS01 HEM ? GO:0004601 ... P68871 31840728
    10779 6kye:E (2.28) BS01 HEM ? GO:0004601 ... P69905 31840728
    10780 6kye:F (2.28) BS01 HEM ? GO:0004601 ... P68871 31840728
    10781 6kye:G (2.28) BS01 HEM ? GO:0004601 ... P69905 31840728
    10782 6kye:H (2.28) BS01 HEM ? GO:0004601 ... P68871 31840728
    10783 6kye:I (2.28) BS01 HEM ? GO:0004601 ... P69905 31840728
    10784 6kye:J (2.28) BS01 HEM ? GO:0004601 ... P68871 31840728
    10785 6kye:K (2.28) BS01 HEM ? GO:0004601 ... P69905 31840728
    10786 6kye:L (2.28) BS01 HEM ? GO:0004601 ... P68871 31840728
    10787 6kzs:A (1.601) BS01 HEM 1.14.-.- GO:0004497 ... Q4H2B8 N/A
    10788 6kzt:A (3.5) BS01 HEM 1.14.-.- GO:0004497 ... Q4H2B8 N/A
    10789 6l1a:A (1.84) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    10790 6l1a:B (1.84) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    10791 6l1b:A (1.74) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    10792 6l1b:B (1.74) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    10793 6l1x:A (3.15) BS01 HEM 1.7.99.7 GO:0004129 ... C6S880 32431824
    10794 6l1x:A (3.15) BS02 HEM 1.7.99.7 GO:0004129 ... C6S880 32431824
    10795 6l2j:A (1.933) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    10796 6l32:A (2.3) BS02 HEM 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    10797 6l39:A (2.97) BS01 HEM ? GO:0004497 ... A0A0A0NSZ7 32822639
    10798 6l39:B (2.97) BS01 HEM ? GO:0004497 ... A0A0A0NSZ7 32822639
    10799 6l3a:A (3.0) BS01 HEM ? GO:0004497 ... A0A0A0NSZ7 32822639
    10800 6l3a:B (3.0) BS01 HEM ? GO:0004497 ... A0A0A0NSZ7 32822639
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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