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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9201 5ker:G (2.202) BS01 HEM ? GO:0004601 ... A4ZQ87 28362841
    9202 5ker:H (2.202) BS01 HEM ? GO:0004601 ... B7SBL4 28362841
    9203 5kkk:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28261000
    9204 5kkz:A (2.97) BS01 HEM ? GO:0005886 ... Q02761 27758861
    9205 5kkz:A (2.97) BS02 HEM ? GO:0005886 ... Q02761 27758861
    9206 5kkz:E (2.97) BS01 HEM ? GO:0005886 ... Q02761 27758861
    9207 5kkz:E (2.97) BS02 HEM ? GO:0005886 ... Q02761 27758861
    9208 5kkz:K (2.97) BS01 HEM ? GO:0005886 ... Q02761 27758861
    9209 5kkz:K (2.97) BS02 HEM ? GO:0005886 ... Q02761 27758861
    9210 5kkz:O (2.97) BS01 HEM ? GO:0005886 ... Q02761 27758861
    9211 5kkz:O (2.97) BS02 HEM ? GO:0005886 ... Q02761 27758861
    9212 5kli:A (2.996) BS01 HEM ? GO:0005886 ... Q02761 27758861
    9213 5kli:A (2.996) BS02 HEM ? GO:0005886 ... Q02761 27758861
    9214 5kli:E (2.996) BS01 HEM ? GO:0005886 ... Q02761 27758861
    9215 5kli:E (2.996) BS02 HEM ? GO:0005886 ... Q02761 27758861
    9216 5kli:K (2.996) BS01 HEM ? GO:0005886 ... Q02761 27758861
    9217 5kli:K (2.996) BS02 HEM ? GO:0005886 ... Q02761 27758861
    9218 5kli:O (2.996) BS01 HEM ? GO:0005886 ... Q02761 27758861
    9219 5kli:O (2.996) BS02 HEM ? GO:0005886 ... Q02761 27758861
    9220 5klv:C (2.652) BS01 HEM ? GO:0005739 ... P00157 27758861
    9221 5klv:C (2.652) BS02 HEM ? GO:0005739 ... P00157 27758861
    9222 5kq0:A (1.8) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9223 5kq0:B (1.8) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9224 5kq2:A (1.9) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9225 5kq2:B (1.9) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9226 5kq3:A (1.85) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9227 5kq3:B (1.85) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9228 5kq6:A (1.62) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9229 5kq6:B (1.62) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9230 5kqh:A (1.82) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9231 5kqh:B (1.82) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9232 5kqi:A (1.87) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9233 5kqi:B (1.87) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9234 5kqk:A (1.75) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9235 5kqk:B (1.75) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9236 5kqn:A (1.75) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9237 5kqn:B (1.75) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9238 5kqq:A (1.87) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9239 5kqq:B (1.87) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9240 5ksf:A (1.75) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9241 5ksf:B (1.75) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9242 5ksg:A (1.62) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9243 5ksg:B (1.62) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9244 5ksi:A (1.8) BS01 HEM ? GO:0004601 ... P69905 29127281
    9245 5ksi:B (1.8) BS01 HEM ? GO:0004601 ... P68871 29127281
    9246 5ksi:C (1.8) BS01 HEM ? GO:0004601 ... P69905 29127281
    9247 5ksi:D (1.8) BS02 HEM ? GO:0004601 ... P68871 29127281
    9248 5ksj:A (2.4) BS01 HEM ? GO:0004601 ... P69905 29127281
    9249 5ksj:B (2.4) BS01 HEM ? GO:0004601 ... P68871 29127281
    9250 5ksj:C (2.4) BS01 HEM ? GO:0004601 ... P69905 29127281
    9251 5ksj:D (2.4) BS01 HEM ? GO:0004601 ... P68871 29127281
    9252 5ksk:A (1.69) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9253 5ksk:B (1.69) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    9254 5ksn:A (1.87) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9255 5ksn:B (1.87) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9256 5kt1:A (2.015) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    9257 5kt8:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9258 5kt8:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9259 5kt9:A (1.88) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9260 5kt9:B (1.88) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    9261 5kyo:A (1.8) BS01 HEM ? GO:0004497 ... A0A1C9CIU0 27936485
    9262 5kyo:B (1.8) BS01 HEM ? GO:0004497 ... A0A1C9CIU0 27936485
    9263 5kyo:C (1.8) BS01 HEM ? GO:0004497 ... A0A1C9CIU0 27936485
    9264 5kyo:D (1.8) BS01 HEM ? GO:0004497 ... A0A1C9CIU0 27936485
    9265 5kyo:E (1.8) BS01 HEM ? GO:0004497 ... A0A1C9CIU0 27936485
    9266 5kyo:F (1.8) BS01 HEM ? GO:0004497 ... A0A1C9CIU0 27936485
    9267 5kzl:A (1.73) BS01 HEM 1.14.14.18 GO:0004392 ... Q8EXM2 28771589
    9268 5l02:A (1.9) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 15567407
    9269 5l02:B (1.9) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 15567407
    9270 5l1o:A (2.03) BS02 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9271 5l1p:A (2.28) BS01 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9272 5l1q:A (2.03) BS01 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9273 5l1r:A (2.0) BS01 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9274 5l1s:A (2.08) BS02 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9275 5l1t:A (2.082) BS02 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9276 5l1u:A (2.074) BS02 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9277 5l1v:A (2.12) BS02 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9278 5l1w:A (2.06) BS02 HEM 1.14.19.8 GO:0004497 ... E3VWI3 27588339
    9279 5l86:A (1.9) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 27500802
    9280 5l86:B (1.9) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 27500802
    9281 5l90:A (2.55) BS01 HEM 1.14.14.- GO:0004497 ... D5DKI8 27686671
    9282 5l90:B (2.55) BS01 HEM 1.14.14.- GO:0004497 ... D5DKI8 27686671
    9283 5l91:A (2.2) BS01 HEM 1.14.14.- GO:0004497 ... D5DKI8 27686671
    9284 5l91:B (2.2) BS01 HEM 1.14.14.- GO:0004497 ... D5DKI8 27686671
    9285 5l92:A (2.1) BS01 HEM 1.14.14.- GO:0004497 ... D5DKI8 27686671
    9286 5l92:B (2.1) BS01 HEM 1.14.14.- GO:0004497 ... D5DKI8 27686671
    9287 5l94:A (2.25) BS01 HEM 1.14.14.- GO:0004497 ... D5DKI8 27686671
    9288 5l94:B (2.25) BS01 HEM 1.14.14.- GO:0004497 ... D5DKI8 27686671
    9289 5lfg:A (1.94) BS01 HEM ? GO:0004601 ... P45718 27808442
    9290 5lfg:B (1.94) BS01 HEM ? GO:0004601 ... P45720 27808442
    9291 5lfg:C (1.94) BS01 HEM ? GO:0004601 ... P45718 27808442
    9292 5lfg:D (1.94) BS01 HEM ? GO:0004601 ... P45720 27808442
    9293 5li6:A (1.95) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    9294 5li6:B (1.95) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    9295 5li7:A (1.58) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    9296 5li7:B (1.58) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    9297 5li8:A (1.83) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    9298 5lie:A (1.799) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    9299 5lie:B (1.799) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    9300 5liv:A (2.67) BS01 HEM 1.14.15.19 GO:0004497 ... A9FDB7 27878817
    9301 5liv:B (2.67) BS01 HEM 1.14.15.19 GO:0004497 ... A9FDB7 27878817
    9302 5liv:C (2.67) BS01 HEM 1.14.15.19 GO:0004497 ... A9FDB7 27878817
    9303 5liv:D (2.67) BS01 HEM 1.14.15.19 GO:0004497 ... A9FDB7 27878817
    9304 5lk9:A (1.12) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    9305 5lk9:B (1.12) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    9306 5lkv:A (1.08) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    9307 5lkv:B (1.08) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    9308 5llz:A (1.14) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    9309 5llz:B (1.14) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    9310 5lte:A (1.65) BS01 HEM ? GO:0046872 ... A4XXY9 27851736
    9311 5lth:A (1.76) BS01 HEM ? GO:0046872 ... A4XXY9 27851736
    9312 5lti:A (1.9) BS01 HEM ? GO:0046872 ... A4XXY9 27851736
    9313 5luf:b (9.1) BS01 HEM ? GO:0005739 ... P00157 27830641
    9314 5luf:b (9.1) BS02 HEM ? GO:0005739 ... P00157 27830641
    9315 5luf:o (9.1) BS01 HEM ? GO:0005739 ... P00157 27830641
    9316 5luf:o (9.1) BS02 HEM ? GO:0005739 ... P00157 27830641
    9317 5m0n:A (1.44) BS01 HEM ? GO:0004497 ... E9NSU2 28053093
    9318 5m0o:A (1.8) BS01 HEM ? GO:0004497 ... E9NSU2 28053093
    9319 5m0o:C (1.8) BS01 HEM ? GO:0004497 ... E9NSU2 28053093
    9320 5m0p:A (1.95) BS01 HEM ? GO:0004497 ... E9NSU2 28053093
    9321 5m0p:B (1.95) BS01 HEM ? GO:0004497 ... E9NSU2 28053093
    9322 5m3l:A (3.8) BS01 HEM ? GO:0005344 ... P13579 28989723
    9323 5m3l:B (3.8) BS01 HEM ? GO:0001666 ... P02218 28989723
    9324 5m3l:C (3.8) BS01 HEM ? GO:0005344 ... P11069 28989723
    9325 5m3l:D (3.8) BS01 HEM ? GO:0005344 ... O61233 28989723
    9326 5m3l:E (3.8) BS01 HEM ? GO:0005344 ... P13579 28989723
    9327 5m3l:F (3.8) BS01 HEM ? GO:0001666 ... P02218 28989723
    9328 5m3l:G (3.8) BS01 HEM ? GO:0005344 ... P11069 28989723
    9329 5m3l:H (3.8) BS01 HEM ? GO:0005344 ... O61233 28989723
    9330 5m3l:I (3.8) BS01 HEM ? GO:0005344 ... P13579 28989723
    9331 5m3l:J (3.8) BS01 HEM ? GO:0001666 ... P02218 28989723
    9332 5m3l:K (3.8) BS01 HEM ? GO:0005344 ... P11069 28989723
    9333 5m3l:L (3.8) BS01 HEM ? GO:0005344 ... O61233 28989723
    9334 5m3s:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28375148
    9335 5m6j:A (1.7) BS01 HEM 1.7.6.1 GO:0005576 ... Q6PQK2 30022039
    9336 5m6k:A (1.6) BS01 HEM 1.7.6.1 GO:0005576 ... Q6PQK2 30022039
    9337 5map:A (1.49) BS01 HEM N/A GO:0004601 ... N/A 28512573
    9338 5map:B (1.49) BS01 HEM N/A GO:0004601 ... N/A 28512573
    9339 5mau:A (1.3) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9340 5mau:B (1.3) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9341 5mba:A (1.9) BS02 HEM ? GO:0005344 ... P02210 1931125
    9342 5mbn:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    9343 5mdx:E (5.3) BS01 HEM ? GO:0005506 ... P56779 28604725
    9344 5mdx:e (5.3) BS02 HEM ? GO:0005506 ... P56779 28604725
    9345 5mfa:A (1.2) BS02 HEM 1.11.2.2 GO:0001878 ... P05164 28348079
    9346 5mjc:A (1.62) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 31576217
    9347 5mjd:A (1.7) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 31576217
    9348 5mjh:A (1.45) BS01 HEM N/A GO:0004601 ... N/A 28512573
    9349 5mjh:B (1.45) BS01 HEM N/A GO:0004601 ... N/A 28512573
    9350 5mms:A (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9351 5mms:A (2.8) BS03 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9352 5mms:B (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9353 5mms:C (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9354 5mms:C (2.8) BS03 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9355 5mms:D (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9356 5mms:D (2.8) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9357 5mms:E (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9358 5mms:F (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9359 5mms:F (2.8) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    9360 5mns:A (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9361 5mns:B (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9362 5mns:C (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9363 5mns:D (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9364 5mns:E (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9365 5mns:F (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9366 5mnv:A (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9367 5mnv:B (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9368 5mnv:C (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9369 5mnv:D (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9370 5mnv:E (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9371 5mnv:F (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9372 5mnv:G (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9373 5mnv:H (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9374 5mnv:I (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    9375 5mx2:E (2.197) BS01 HEM ? GO:0005506 ... Q8DIP0 28718766
    9376 5mx2:F (2.197) BS01 HEM ? GO:0005506 ... Q8DIN9 28718766
    9377 5mx2:V (2.197) BS01 HEM ? GO:0005506 ... P0A386 28718766
    9378 5mx2:e (2.197) BS01 HEM ? GO:0005506 ... Q8DIP0 28718766
    9379 5mx2:f (2.197) BS01 HEM ? GO:0005506 ... Q8DIN9 28718766
    9380 5mx2:v (2.197) BS01 HEM ? GO:0005506 ... P0A386 28718766
    9381 5ncb:A (1.44) BS01 HEM ? GO:0004497 ... A0A076MY51 29950589
    9382 5ndc:A (2.3) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 28674417
    9383 5ni1:A (3.2) BS01 HEM ? GO:0004601 ... P69905 28665412
    9384 5ni1:B (3.2) BS01 HEM ? GO:0004601 ... P68871 28665412
    9385 5ni1:C (3.2) BS01 HEM ? GO:0004601 ... P69905 28665412
    9386 5ni1:D (3.2) BS01 HEM ? GO:0004601 ... P68871 28665412
    9387 5nku:A (2.0) BS01 HEM ? GO:0046872 ... B8HNS6 29142780
    9388 5nku:B (2.0) BS01 HEM ? GO:0046872 ... B8HNS6 29142780
    9389 5nkv:A (2.0) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9390 5nkv:B (2.0) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9391 5nmi:C (3.5) BS01 HEM ? GO:0005739 ... P00157 27412848
    9392 5nmi:C (3.5) BS02 HEM ? GO:0005739 ... P00157 27412848
    9393 5nmi:P (3.5) BS01 HEM ? GO:0005739 ... P00157 27412848
    9394 5nmi:P (3.5) BS02 HEM ? GO:0005739 ... P00157 27412848
    9395 5nse:A (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    9396 5nse:B (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    9397 5nvi:A (1.6) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 29108649
    9398 5nw6:A (1.7) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 29108649
    9399 5nws:A (2.227) BS01 HEM N/A GO:0004497 ... N/A 29327817
    9400 5o0t:A (2.05) BS01 HEM ? N/A K9WT99 28607049

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218