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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9001 5gnm:D (2.7) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    9002 5gpn:C (5.4) BS01 HEM ? GO:0005739 ... P00157 27654917
    9003 5gpn:C (5.4) BS02 HEM ? GO:0005739 ... P00157 27654917
    9004 5gpn:O (5.4) BS01 HEM ? GO:0005739 ... P00157 27654917
    9005 5gpn:O (5.4) BS02 HEM ? GO:0005739 ... P00157 27654917
    9006 5gt2:A (2.093) BS01 HEM 1.11.1.- GO:0004601 ... P76536 28109884
    9007 5gt2:B (2.093) BS01 HEM 1.11.1.- GO:0004601 ... P76536 28109884
    9008 5gt2:C (2.093) BS01 HEM 1.11.1.- GO:0004601 ... P76536 28109884
    9009 5gt2:D (2.093) BS01 HEM 1.11.1.- GO:0004601 ... P76536 28109884
    9010 5gth:E (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    9011 5gth:F (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    9012 5gth:e (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    9013 5gth:f (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    9014 5gti:E (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    9015 5gti:F (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    9016 5gti:e (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    9017 5gti:f (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    9018 5gup:7 (4.0) BS02 HEM ? GO:0005739 ... Q1HBG9 27912063
    9019 5gup:7 (4.0) BS03 HEM ? GO:0005739 ... Q1HBG9 27912063
    9020 5gup:w (4.0) BS01 HEM ? GO:0005739 ... Q1HBG9 27912063
    9021 5gup:w (4.0) BS02 HEM ? GO:0005739 ... Q1HBG9 27912063
    9022 5guw:B (3.2) BS03 HEM 1.7.2.5 GO:0004129 ... Q59647 28847930
    9023 5guw:B (3.2) BS04 HEM 1.7.2.5 GO:0004129 ... Q59647 28847930
    9024 5guw:C (3.2) BS03 HEM ? GO:0005886 ... Q59646 28847930
    9025 5guw:D (3.2) BS02 HEM 1.7.2.5 GO:0004129 ... Q59647 28847930
    9026 5guw:D (3.2) BS03 HEM 1.7.2.5 GO:0004129 ... Q59647 28847930
    9027 5gux:B (3.3) BS01 HEM 1.7.2.5 GO:0004129 ... Q59647 28847930
    9028 5gux:B (3.3) BS02 HEM 1.7.2.5 GO:0004129 ... Q59647 28847930
    9029 5gux:C (3.3) BS01 HEM ? GO:0005886 ... Q59646 28847930
    9030 5gwe:A (2.0) BS01 HEM ? GO:0004497 ... Q8NSW2 28607077
    9031 5gwe:B (2.0) BS01 HEM ? GO:0004497 ... Q8NSW2 28607077
    9032 5gwe:C (2.0) BS01 HEM ? GO:0004497 ... Q8NSW2 28607077
    9033 5gwe:D (2.0) BS01 HEM ? GO:0004497 ... Q8NSW2 28607077
    9034 5gxg:A (1.7) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 28223532
    9035 5h1z:A (3.1) BS01 HEM ? GO:0004497 ... A0A1S4NYE0 27941697
    9036 5h2f:E (2.2) BS01 HEM ? GO:0005506 ... Q8DIP0 28272640
    9037 5h2f:F (2.2) BS01 HEM ? GO:0009523 ... Q8DIN9 28272640
    9038 5h2f:e (2.2) BS01 HEM ? GO:0005506 ... Q8DIP0 28272640
    9039 5h2f:f (2.2) BS01 HEM ? GO:0009523 ... Q8DIN9 28272640
    9040 5hav:A (1.268) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 26716352
    9041 5hbi:A (1.6) BS01 HEM ? GO:0001666 ... P02213 9826511
    9042 5hbi:A (1.6) BS02 HEM ? GO:0001666 ... P02213 9826511
    9043 5hbi:B (1.6) BS01 HEM ? GO:0001666 ... P02213 9826511
    9044 5hbi:B (1.6) BS02 HEM ? GO:0001666 ... P02213 9826511
    9045 5hdi:A (1.54) BS01 HEM 1.14.-.- GO:0004497 ... P9WPL1 27225995
    9046 5hdi:B (1.54) BS01 HEM 1.14.-.- GO:0004497 ... P9WPL1 27225995
    9047 5hh3:A (2.1) BS01 HEM ? GO:0004497 ... Q6ZZI8 26820384
    9048 5hh3:C (2.1) BS01 HEM ? GO:0004497 ... Q6ZZI8 26820384
    9049 5hiw:A (1.85) BS01 HEM 1.14.-.- GO:0004497 ... A9FFA1 27177597
    9050 5hlq:A (1.5) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 27108710
    9051 5hlu:A (1.5) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 27108710
    9052 5hlx:A (1.5) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 27108710
    9053 5hpw:A (2.5) BS03 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    9054 5hpw:B (2.5) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    9055 5hpw:C (2.5) BS03 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    9056 5hpw:D (2.5) BS03 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    9057 5hs1:A (2.1) BS01 HEM ? GO:0004497 ... A6ZSR0 27188873
    9058 5hu6:A (2.9) BS01 HEM ? GO:0004601 ... P69905 25497229
    9059 5hu6:B (2.9) BS01 HEM ? GO:0004601 ... P68871 25497229
    9060 5hu6:D (2.9) BS01 HEM ? N/A Q581F2 25497229
    9061 5hwz:A (1.45) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 30155185
    9062 5hy8:A (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    9063 5hy8:B (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    9064 5hy8:C (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    9065 5hy8:D (2.3) BS02 HEM ? GO:0004601 ... P68871 N/A
    9066 5hy8:E (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    9067 5hy8:F (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    9068 5hy8:G (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    9069 5hy8:H (2.3) BS02 HEM ? GO:0004601 ... P68871 N/A
    9070 5hy8:S (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    9071 5hy8:T (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    9072 5ibd:A (1.77) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 27002486
    9073 5ibe:A (1.624) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 27002486
    9074 5ibf:A (1.7) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 27002486
    9075 5ibg:A (2.1) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 27002486
    9076 5ibh:A (2.0201) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 27002486
    9077 5ibi:A (2.2) BS02 HEM 1.14.19.70 GO:0004497 ... P9WPP7 27002486
    9078 5ibj:A (2.5) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 27002486
    9079 5ik1:A (1.53) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 27452076
    9080 5ikd:A (1.109) BS01 HEM 1.11.1.19
    1.11.1.7
    GO:0004601 ... I2DBY1 N/A
    9081 5ikg:A (1.95) BS01 HEM 1.11.1.19
    1.11.1.7
    GO:0004601 ... I2DBY1 N/A
    9082 5iki:A (2.4) BS01 HEM 1.14.15.8
    1.14.99.-
    GO:0004497 ... Q06069 26864272
    9083 5iki:B (2.4) BS01 HEM 1.14.15.8
    1.14.99.-
    GO:0004497 ... Q06069 26864272
    9084 5iqx:A (1.05) BS01 HEM ? GO:0046872 ... G3XD33 27074415
    9085 5irq:A (2.202) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    9086 5irq:B (2.202) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    9087 5irq:C (2.202) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    9088 5irq:D (2.202) BS02 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    9089 5irv:A (3.098) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    9090 5irv:B (3.098) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    9091 5irv:C (3.098) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    9092 5irv:D (3.098) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    9093 5it1:A (2.1) BS01 HEM 1.14.14.1 GO:0004497 ... Q70AS3 27231902
    9094 5it1:B (2.1) BS01 HEM 1.14.14.1 GO:0004497 ... Q70AS3 27231902
    9095 5it1:C (2.1) BS01 HEM 1.14.14.1 GO:0004497 ... Q70AS3 27231902
    9096 5it1:D (2.1) BS01 HEM 1.14.14.1 GO:0004497 ... Q70AS3 27231902
    9097 5iut:A (2.34) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 27280734
    9098 5iuz:A (2.73) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 27280734
    9099 5iuz:B (2.73) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 27280734
    9100 5ixr:A (2.5) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9101 5ixr:B (2.5) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9102 5ixv:A (2.3) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9103 5ixv:B (2.3) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9104 5ixw:A (2.46) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9105 5ixw:B (2.46) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9106 5ixx:A (2.35) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9107 5ixx:B (2.35) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9108 5ixz:A (2.4) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9109 5ixz:B (2.4) BS01 HEM ? GO:0020037 ... Q8YUQ7 N/A
    9110 5j4z:AC (5.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    9111 5j4z:AC (5.8) BS02 HEM ? GO:0005739 ... P24959 27654913
    9112 5j4z:AD (5.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    9113 5j4z:AN (5.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    9114 5j4z:AO (5.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    9115 5j7y:AC (6.7) BS01 HEM ? GO:0005739 ... P24959 27654913
    9116 5j7y:AC (6.7) BS02 HEM ? GO:0005739 ... P24959 27654913
    9117 5j7y:AD (6.7) BS01 HEM N/A GO:0009055 ... N/A 27654913
    9118 5j7y:AN (6.7) BS01 HEM ? GO:0005739 ... P24959 27654913
    9119 5j7y:AO (6.7) BS01 HEM N/A GO:0009055 ... N/A 27654913
    9120 5j8k:AC (7.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    9121 5j8k:AC (7.8) BS02 HEM ? GO:0005739 ... P24959 27654913
    9122 5j8k:AD (7.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    9123 5j8k:AN (7.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    9124 5j8k:AO (7.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    9125 5jdo:A (3.2) BS01 HEM ? N/A G0UVW6 27083048
    9126 5jdo:A (3.2) BS02 HEM ? N/A G0UVW6 27083048
    9127 5jdo:B (3.2) BS01 HEM ? N/A G0UVW6 27083048
    9128 5jdo:B (3.2) BS02 HEM ? N/A G0UVW6 27083048
    9129 5jdo:C (3.2) BS01 HEM ? GO:0004601 ... P69905 27083048
    9130 5jdo:D (3.2) BS01 HEM ? GO:0004601 ... P68871 27083048
    9131 5jdo:E (3.2) BS01 HEM ? GO:0004601 ... P69905 27083048
    9132 5jdo:F (3.2) BS01 HEM ? GO:0004601 ... P68871 27083048
    9133 5jhx:A (1.4) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 27293030
    9134 5jhx:B (1.4) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 27293030
    9135 5jhy:A (1.4) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 27293030
    9136 5jhy:B (1.4) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 27293030
    9137 5jhz:A (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 27293030
    9138 5jhz:B (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 27293030
    9139 5jkv:A (2.75) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    9140 5jkw:A (3.0) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    9141 5jl6:A (3.0) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    9142 5jl7:A (3.1) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    9143 5jl9:A (3.1) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    9144 5jlc:A (2.4) BS01 HEM 1.14.14.154 GO:0004497 ... P50859 30126961
    9145 5jom:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 27487825
    9146 5jpr:A (1.806) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 27897163
    9147 5jq2:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27639964
    9148 5jq2:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27639964
    9149 5jqr:A (1.81) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 27897163
    9150 5jru:A (2.305) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9151 5jru:B (2.305) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9152 5jru:C (2.305) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9153 5jru:D (2.305) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9154 5jru:E (2.305) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9155 5jru:F (2.305) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9156 5jrv:A (1.953) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9157 5jrv:B (1.953) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9158 5jrx:A (1.95) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9159 5jrx:B (1.95) BS01 HEM ? GO:0020037 ... Q8RBX6 27328180
    9160 5jtd:A (1.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27639964
    9161 5jtd:B (1.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27639964
    9162 5jxu:A (1.751) BS01 HEM ? GO:0004601 ... D1A807 29308294
    9163 5jxu:B (1.751) BS01 HEM ? GO:0004601 ... D1A807 29308294
    9164 5k1l:A (1.08) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    9165 5k1l:B (1.08) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    9166 5k7k:A (2.3) BS01 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 28682065
    9167 5k8z:A (1.55) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9168 5k8z:B (1.55) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9169 5k8z:C (1.55) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9170 5k8z:D (1.55) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9171 5k90:A (1.28) BS02 HEM ? GO:0016491 ... B8HNS6 29142780
    9172 5k90:B (1.28) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9173 5k90:C (1.28) BS02 HEM ? GO:0016491 ... B8HNS6 29142780
    9174 5k90:D (1.28) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9175 5k91:A (1.18) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9176 5k91:B (1.18) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9177 5k91:C (1.18) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9178 5k91:D (1.18) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    9179 5kaf:E (3.00001) BS01 HEM ? GO:0005506 ... Q8DIP0 27871088
    9180 5kaf:F (3.00001) BS01 HEM ? GO:0005506 ... Q8DIN9 27871088
    9181 5kaf:e (3.00001) BS01 HEM ? GO:0005506 ... Q8DIP0 27871088
    9182 5kaf:f (3.00001) BS01 HEM ? GO:0005506 ... Q8DIN9 27871088
    9183 5kai:E (2.80001) BS01 HEM ? GO:0005506 ... Q8DIP0 27871088
    9184 5kai:F (2.80001) BS01 HEM ? GO:0005506 ... Q8DIN9 27871088
    9185 5kai:e (2.80001) BS01 HEM ? GO:0005506 ... Q8DIP0 27871088
    9186 5kai:f (2.80001) BS01 HEM ? GO:0005506 ... Q8DIN9 27871088
    9187 5kd1:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28450187
    9188 5kdb:A (1.644) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    9189 5kdq:A (2.15) BS01 HEM ? GO:0004601 ... P69905 27529207
    9190 5kdq:B (2.15) BS01 HEM ? GO:0004601 ... P68871 27529207
    9191 5kdq:C (2.15) BS01 HEM ? GO:0004601 ... P69905 27529207
    9192 5kdq:D (2.15) BS01 HEM ? GO:0004601 ... P68871 27529207
    9193 5kdy:A (1.589) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    9194 5kdz:A (1.424) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    9195 5ker:A (2.202) BS01 HEM ? GO:0004601 ... A4ZQ87 28362841
    9196 5ker:B (2.202) BS01 HEM ? GO:0004601 ... B7SBL4 28362841
    9197 5ker:C (2.202) BS01 HEM ? GO:0004601 ... A4ZQ87 28362841
    9198 5ker:D (2.202) BS01 HEM ? GO:0004601 ... B7SBL4 28362841
    9199 5ker:E (2.202) BS01 HEM ? GO:0004601 ... A4ZQ87 28362841
    9200 5ker:F (2.202) BS01 HEM ? GO:0004601 ... B7SBL4 28362841

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218