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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8801 5d8y:X (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    8802 5de0:A (2.24) BS01 HEM ? GO:0004601 ... Q9KQ59 26431465
    8803 5de0:B (2.24) BS01 HEM ? GO:0004601 ... Q9KQ59 26431465
    8804 5de0:C (2.24) BS01 HEM ? GO:0004601 ... Q9KQ59 26431465
    8805 5de0:D (2.24) BS01 HEM ? GO:0004601 ... Q9KQ59 26431465
    8806 5de9:A (1.76) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 22203090
    8807 5de9:B (1.76) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 22203090
    8808 5djq:A (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    8809 5djq:A (3.2) BS03 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    8810 5djq:D (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    8811 5djq:D (3.2) BS03 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    8812 5djq:G (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    8813 5djq:G (3.2) BS03 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    8814 5djq:K (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    8815 5djq:K (3.2) BS03 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    8816 5dqn:A (2.262) BS01 HEM 1.14.15.29 GO:0004497 ... A0R4Y3 26522442
    8817 5dyp:A (2.4) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083
    8818 5dyp:C (2.4) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083
    8819 5dyz:A (1.967) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083
    8820 5dyz:C (1.967) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083
    8821 5e0e:A (3.4) BS01 HEM 1.14.14.1 GO:0004497 ... J9JD75 26826176
    8822 5e29:A (1.85) BS02 HEM ? GO:0004601 ... P69905 26582149
    8823 5e29:B (1.85) BS02 HEM ? GO:0004601 ... P68871 26582149
    8824 5e29:C (1.85) BS05 HEM ? GO:0004601 ... P69905 26582149
    8825 5e29:D (1.85) BS02 HEM ? GO:0004601 ... P68871 26582149
    8826 5e58:A (2.4) BS02 HEM 1.14.14.1 GO:0004497 ... J9JD66 26826176
    8827 5e58:B (2.4) BS01 HEM 1.14.14.1 GO:0004497 ... J9JD66 26826176
    8828 5e58:C (2.4) BS01 HEM 1.14.14.1 GO:0004497 ... J9JD66 26826176
    8829 5e58:D (2.4) BS02 HEM 1.14.14.1 GO:0004497 ... J9JD66 26826176
    8830 5e58:E (2.4) BS01 HEM 1.14.14.1 GO:0004497 ... J9JD66 26826176
    8831 5e58:F (2.4) BS01 HEM 1.14.14.1 GO:0004497 ... J9JD66 26826176
    8832 5e6e:A (1.76) BS01 HEM ? GO:0004601 ... P69905 27085422
    8833 5e6e:B (1.76) BS01 HEM ? GO:0004601 ... P68871 27085422
    8834 5e78:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 28739446
    8835 5e78:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 28739446
    8836 5e79:E (3.5) BS01 HEM ? GO:0005506 ... Q8DIP0 26863980
    8837 5e79:F (3.5) BS01 HEM ? GO:0009523 ... Q8DIN9 26863980
    8838 5e79:V (3.5) BS01 HEM ? GO:0005506 ... P0A386 26863980
    8839 5e79:e (3.5) BS01 HEM ? GO:0005506 ... Q8DIP0 26863980
    8840 5e79:f (3.5) BS01 HEM ? GO:0009523 ... Q8DIN9 26863980
    8841 5e79:v (3.5) BS01 HEM ? GO:0005506 ... P0A386 26863980
    8842 5e7c:E (4.5) BS01 HEM ? GO:0005506 ... Q8DIP0 26863980
    8843 5e7c:F (4.5) BS01 HEM ? GO:0009523 ... Q8DIN9 26863980
    8844 5e7c:V (4.5) BS01 HEM ? GO:0005506 ... P0A386 26863980
    8845 5e7c:e (4.5) BS01 HEM ? GO:0005506 ... Q8DIP0 26863980
    8846 5e7c:f (4.5) BS01 HEM ? GO:0009523 ... Q8DIN9 26863980
    8847 5e7c:v (4.5) BS01 HEM ? GO:0005506 ... P0A386 26863980
    8848 5e7y:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8849 5e7y:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8850 5e83:A (1.8) BS01 HEM ? GO:0004601 ... P69905 27378309
    8851 5e83:B (1.8) BS01 HEM ? GO:0004601 ... P68871 27378309
    8852 5e83:C (1.8) BS02 HEM ? GO:0004601 ... P69905 27378309
    8853 5e83:D (1.8) BS01 HEM ? GO:0004601 ... P68871 27378309
    8854 5eab:A (2.6) BS01 HEM ? GO:0004497 ... A6ZSR0 27907120
    8855 5eac:A (2.26) BS01 HEM ? GO:0004497 ... A6ZSR0 27907120
    8856 5ead:A (2.0) BS01 HEM ? GO:0004497 ... A6ZSR0 27907120
    8857 5eae:A (2.11) BS02 HEM ? GO:0004497 ... A6ZSR0 27907120
    8858 5eaf:A (2.65) BS01 HEM ? GO:0004497 ... A6ZSR0 27907120
    8859 5eaf:B (2.65) BS01 HEM ? GO:0004497 ... A6ZSR0 27907120
    8860 5eag:A (2.4) BS02 HEM ? GO:0004497 ... A6ZSR0 27907120
    8861 5eah:A (2.541) BS01 HEM ? GO:0004497 ... A6ZSR0 27907120
    8862 5edt:A (2.45) BS01 HEM 1.14.-.- GO:0004497 ... P0A515 27002486
    8863 5ee4:C (2.3) BS01 HEM ? GO:0004601 ... P69905 26671256
    8864 5ee4:D (2.3) BS01 HEM ? GO:0004601 ... P68871 26671256
    8865 5ee4:E (2.3) BS01 HEM ? GO:0004601 ... P69905 26671256
    8866 5ee4:F (2.3) BS01 HEM ? GO:0004601 ... P68871 26671256
    8867 5eet:A (2.0) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8868 5ejt:A (1.55) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 26787871
    8869 5ejx:A (1.5) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 26787871
    8870 5ek2:A (2.68) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 26642377
    8871 5ek2:B (2.68) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 26642377
    8872 5ek3:A (2.209) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 26642377
    8873 5ek3:B (2.209) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 26642377
    8874 5ek4:A (2.64) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 26642377
    8875 5ek4:B (2.64) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 26642377
    8876 5em4:A (3.02) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 26982502
    8877 5em4:B (3.02) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 26982502
    8878 5eoh:A (1.9) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8879 5eqb:A (2.19) BS01 HEM 1.14.14.154 GO:0004497 ... P10614 24613931
    8880 5eqm:A (2.05) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8881 5ese:A (2.2) BS01 HEM 1.14.13.70 GO:0004497 ... A6ZSR0 29263059
    8882 5esf:A (2.25) BS01 HEM 1.14.13.70 GO:0004497 ... A6ZSR0 29263059
    8883 5esg:A (1.981) BS02 HEM 1.14.13.70 GO:0004497 ... A6ZSR0 29263059
    8884 5esh:A (2.15) BS01 HEM 1.14.13.70 GO:0004497 ... A6ZSR0 29263059
    8885 5esi:A (2.1) BS01 HEM ? GO:0004497 ... A6ZSR0 29263059
    8886 5esj:A (2.15) BS01 HEM ? GO:0004497 ... A6ZSR0 29263059
    8887 5esk:A (2.24) BS02 HEM ? GO:0004497 ... A6ZSR0 29263059
    8888 5esl:A (2.35) BS02 HEM ? GO:0004497 ... A6ZSR0 N/A
    8889 5esm:A (2.0) BS01 HEM 1.14.13.70 GO:0004497 ... A6ZSR0 N/A
    8890 5esn:A (2.35) BS01 HEM 1.14.13.70 GO:0004497 ... A6ZSR0 N/A
    8891 5etw:A (2.7) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 26642377
    8892 5etw:B (2.7) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 26642377
    8893 5eu2:A (2.0) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8894 5eui:A (1.45) BS01 HEM ? GO:0004601 ... U5KQB1 N/A
    8895 5eui:B (1.45) BS01 HEM ? GO:0004601 ... U5KNG4 N/A
    8896 5ev5:A (2.0) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8897 5ex6:A (2.4) BS01 HEM ? GO:0004497 ... Q8KLL9 27477788
    8898 5ex6:B (2.4) BS01 HEM ? GO:0004497 ... Q8KLL9 27477788
    8899 5ex6:C (2.4) BS01 HEM ? GO:0004497 ... Q8KLL9 27477788
    8900 5ex8:A (2.1) BS01 HEM ? GO:0004497 ... Q8KLL7 28144358
    8901 5ex9:A (2.2) BS01 HEM ? GO:0004497 ... Q8KLL7 28144358
    8902 5eyj:A (2.4) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8903 5eys:A (1.75) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8904 5f0b:A (2.146) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8905 5f2a:A (2.1) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 28500341
    8906 5ff1:A (1.97) BS03 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 27398304
    8907 5ff1:B (1.97) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 27398304
    8908 5fiw:A (1.7) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 N/A
    8909 5fiw:B (1.7) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 N/A
    8910 5fiw:C (1.7) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 N/A
    8911 5fiw:D (1.7) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 N/A
    8912 5fj2:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8913 5fj2:B (2.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8914 5fj3:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8915 5fj3:B (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8916 5fnb:A (1.792) BS03 HEM 1.11.1.16 GO:0000302 ... O94753 27118867
    8917 5fnb:B (1.792) BS03 HEM 1.11.1.16 GO:0000302 ... O94753 27118867
    8918 5fne:A (1.499) BS03 HEM 1.11.1.16 GO:0000302 ... O94753 27118867
    8919 5foi:A (2.21) BS01 HEM 1.14.-.- GO:0004497 ... Q83WF5 27420774
    8920 5foi:B (2.21) BS01 HEM 1.14.-.- GO:0004497 ... Q83WF5 27420774
    8921 5frb:A (2.99) BS01 HEM 1.14.14.154 GO:0004497 ... E9QY26 28461309
    8922 5fsa:A (2.86) BS01 HEM 1.14.14.154 GO:0001766 ... P10613 28258218
    8923 5fsa:B (2.86) BS01 HEM 1.14.14.154 GO:0001766 ... P10613 28258218
    8924 5fuj:A (1.83) BS01 HEM 1.11.2.1 GO:0004601 ... A0A023H437 N/A
    8925 5fuj:B (1.83) BS01 HEM 1.11.2.1 GO:0004601 ... A0A023H437 N/A
    8926 5fuk:A (1.55) BS01 HEM 1.11.2.1 GO:0004601 ... A0A023H437 N/A
    8927 5fuk:B (1.55) BS01 HEM 1.11.2.1 GO:0004601 ... A0A023H437 N/A
    8928 5fvo:A (2.12) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8929 5fvp:A (2.099) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8930 5fvp:B (2.099) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8931 5fvq:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8932 5fvq:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8933 5fvr:A (1.842) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8934 5fvr:B (1.842) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8935 5fvs:A (1.948) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8936 5fvs:B (1.948) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8937 5fvt:A (1.828) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8938 5fvt:B (1.828) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8939 5fvu:A (2.224) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8940 5fvu:B (2.224) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8941 5fvv:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8942 5fvv:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8943 5fvw:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8944 5fvw:B (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8945 5fvw:B (2.2) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8946 5fvx:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8947 5fvx:B (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29475 27050842
    8948 5fvy:A (2.098) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 27050842
    8949 5fvy:B (2.098) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 27050842
    8950 5fvz:A (2.048) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 27050842
    8951 5fvz:B (2.048) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 27050842
    8952 5fw0:A (1.8) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8953 5fw0:B (1.8) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 27050842
    8954 5fw4:A (1.8) BS01 HEM 1.11.1.19 GO:0004601 ... Q47KB1 26901432
    8955 5fw4:B (1.8) BS01 HEM 1.11.1.19 GO:0004601 ... Q47KB1 26901432
    8956 5fyf:A (2.04) BS01 HEM ? GO:0004497 ... A1TY82 N/A
    8957 5fyf:B (2.04) BS01 HEM ? GO:0004497 ... A1TY82 N/A
    8958 5fyg:A (2.22) BS01 HEM ? GO:0004497 ... A1TY82 N/A
    8959 5fyg:B (2.22) BS01 HEM ? GO:0004497 ... A1TY82 N/A
    8960 5g0n:A (1.936) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27250740
    8961 5g0n:B (1.936) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 27250740
    8962 5g0o:A (1.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27250740
    8963 5g0o:B (1.85) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 27250740
    8964 5g0p:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 27250740
    8965 5g0p:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 27250740
    8966 5g5j:A (2.6) BS02 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 28919040
    8967 5g65:A (2.03) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8968 5g66:A (1.76) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8969 5g67:A (1.97) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8970 5g68:A (1.63) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8971 5g69:A (2.016) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8972 5g6a:A (1.92) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8973 5g6b:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8974 5g6c:A (2.13) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8975 5g6d:A (1.821) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8976 5g6e:A (2.111) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8977 5g6f:A (2.26) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8978 5g6g:A (1.981) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8979 5g6h:A (1.911) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8980 5g6i:A (1.981) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8981 5g6j:A (1.88) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8982 5g6k:A (1.951) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8983 5g6l:A (2.034) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8984 5g6m:A (1.77) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8985 5g6n:A (1.91) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8986 5g6o:A (1.719) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8987 5g6p:A (2.18) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8988 5g6q:A (2.03) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    8989 5gh0:A (2.3) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 28653416
    8990 5gj3:A (2.0) BS01 HEM ? N/A A5UZ69 28913898
    8991 5gj3:A (2.0) BS02 HEM ? N/A A5UZ69 28913898
    8992 5gkn:A (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    8993 5gkn:B (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    8994 5gkn:C (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    8995 5gkn:D (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    8996 5gls:A (1.93) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 27986533
    8997 5gnl:A (1.95) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    8998 5gnm:A (2.7) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    8999 5gnm:B (2.7) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    9000 5gnm:C (2.7) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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