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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8401 4ybn:A (1.9) BS01 HEM ? GO:0000166 ... A0R238 26434506
    8402 4ybn:A (1.9) BS02 HEM ? GO:0000166 ... A0R238 26434506
    8403 4ybn:B (1.9) BS01 HEM ? GO:0000166 ... A0R238 26434506
    8404 4ybn:B (1.9) BS02 HEM ? GO:0000166 ... A0R238 26434506
    8405 4ye1:A (1.39) BS01 HEM ? GO:0005515 ... P00044 N/A
    8406 4ye1:B (1.39) BS01 HEM ? GO:0005515 ... P00044 N/A
    8407 4ymp:A (3.15) BS01 HEM ? GO:0046872 ... A0A1C7D116 N/A
    8408 4ymp:A (3.15) BS02 HEM ? GO:0046872 ... A0A1C7D116 N/A
    8409 4ymp:C (3.15) BS01 HEM ? GO:0046872 ... A0A1C7D116 N/A
    8410 4ymp:C (3.15) BS02 HEM ? GO:0046872 ... A0A1C7D116 N/A
    8411 4ynr:A (1.92) BS01 HEM 2.7.13.3 N/A P9WGK2 25670859
    8412 4ynr:B (1.92) BS01 HEM 2.7.13.3 N/A P9WGK2 25670859
    8413 4yof:A (1.9) BS01 HEM 2.7.13.3 N/A P9WGK3 25670859
    8414 4yof:B (1.9) BS01 HEM 2.7.13.3 N/A P9WGK3 25670859
    8415 4ysx:C (2.25) BS02 HEM ? GO:0005515 ... P92506 26198225
    8416 4ysx:D (2.25) BS02 HEM ? GO:0005515 ... P92507 26198225
    8417 4ysx:G (2.25) BS01 HEM ? GO:0005515 ... P92506 26198225
    8418 4ysx:H (2.25) BS01 HEM ? GO:0005515 ... P92507 26198225
    8419 4ysy:C (3.1) BS02 HEM ? GO:0005515 ... P92506 26198225
    8420 4ysy:D (3.1) BS02 HEM ? GO:0005515 ... P92507 26198225
    8421 4ysy:G (3.1) BS02 HEM ? GO:0005515 ... P92506 26198225
    8422 4ysy:H (3.1) BS02 HEM ? GO:0005515 ... P92507 26198225
    8423 4ysz:C (3.3) BS01 HEM ? GO:0005515 ... P92506 26198225
    8424 4ysz:D (3.3) BS01 HEM ? GO:0005515 ... P92507 26198225
    8425 4ysz:G (3.3) BS01 HEM ? GO:0005515 ... P92506 26198225
    8426 4ysz:H (3.3) BS01 HEM ? GO:0005515 ... P92507 26198225
    8427 4yt0:C (3.66) BS01 HEM ? GO:0005515 ... P92506 26198225
    8428 4yt0:D (3.66) BS01 HEM ? GO:0005515 ... P92507 26198225
    8429 4yt0:G (3.66) BS01 HEM ? GO:0005515 ... P92506 26198225
    8430 4yt0:H (3.66) BS01 HEM ? GO:0005515 ... P92507 26198225
    8431 4yt3:A (1.8) BS01 HEM 1.14.15.8
    1.14.99.-
    GO:0004497 ... Q06069 26864272
    8432 4yt3:B (1.8) BS01 HEM 1.14.15.8
    1.14.99.-
    GO:0004497 ... Q06069 26864272
    8433 4ytm:C (3.4) BS01 HEM ? GO:0005515 ... P92506 26198225
    8434 4ytm:D (3.4) BS01 HEM ? GO:0005515 ... P92507 26198225
    8435 4ytm:G (3.4) BS01 HEM ? GO:0005515 ... P92506 26198225
    8436 4ytm:H (3.4) BS01 HEM ? GO:0005515 ... P92507 26198225
    8437 4ytn:C (3.0) BS01 HEM ? GO:0005515 ... P92506 N/A
    8438 4ytn:D (3.0) BS01 HEM ? GO:0005515 ... P92507 N/A
    8439 4ytn:G (3.0) BS02 HEM ? GO:0005515 ... P92506 N/A
    8440 4ytn:H (3.0) BS02 HEM ? GO:0005515 ... P92507 N/A
    8441 4ytp:C (3.1) BS01 HEM ? GO:0005515 ... D0VWV4 26198225
    8442 4ytp:D (3.1) BS01 HEM ? GO:0005515 ... A5GZW8 26198225
    8443 4yu3:A (2.45) BS01 HEM ? GO:0004601 ... A0A0R4I977 N/A
    8444 4yu3:B (2.45) BS01 HEM ? GO:0004601 ... A0A0R4I978 N/A
    8445 4yu4:A (2.8) BS01 HEM ? GO:0004601 ... A0A0R4I977 N/A
    8446 4yu4:B (2.8) BS01 HEM ? GO:0004601 ... A0A0R4I978 N/A
    8447 4yu4:C (2.8) BS01 HEM ? GO:0004601 ... A0A0R4I977 N/A
    8448 4yu4:D (2.8) BS01 HEM ? GO:0004601 ... A0A0R4I978 N/A
    8449 4yuu:E1 (2.77) BS02 HEM ? GO:0005506 ... Q9TM20 26757821
    8450 4yuu:F2 (2.77) BS01 HEM ? GO:0005506 ... Q9TM21 26757821
    8451 4yuu:V1 (2.77) BS01 HEM ? GO:0005506 ... Q76FB0 26757821
    8452 4yuu:V2 (2.77) BS01 HEM ? GO:0005506 ... Q76FB0 26757821
    8453 4yuu:e1 (2.77) BS02 HEM ? GO:0005506 ... Q9TM20 26757821
    8454 4yuu:e2 (2.77) BS02 HEM ? GO:0005506 ... Q9TM20 26757821
    8455 4yuu:v1 (2.77) BS01 HEM ? GO:0005506 ... Q76FB0 26757821
    8456 4yuu:v2 (2.77) BS01 HEM ? GO:0005506 ... Q76FB0 26757821
    8457 4yxd:C (3.0) BS01 HEM ? GO:0005515 ... D0VWV4 26198225
    8458 4yxd:D (3.0) BS01 HEM ? GO:0005515 ... A5GZW8 26198225
    8459 4yzr:A (1.35) BS02 HEM 1.14.-.- GO:0004497 ... O31785 N/A
    8460 4z0l:A (2.29) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 26088701
    8461 4z0l:B (2.29) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 26088701
    8462 4z0l:C (2.29) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 26088701
    8463 4z0l:D (2.29) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 26088701
    8464 4z5p:A (1.9) BS01 HEM ? GO:0004497 ... Q8GGQ1 N/A
    8465 4z5p:B (1.9) BS01 HEM ? GO:0004497 ... Q8GGQ1 N/A
    8466 4z5q:A (1.801) BS01 HEM ? GO:0004497 ... Q8GGM6 N/A
    8467 4zdy:A (2.02) BS01 HEM ? GO:0004497 ... A6ZSR0 27188873
    8468 4zdz:A (2.3) BS01 HEM ? GO:0004497 ... A6ZSR0 27188873
    8469 4ze0:A (2.2) BS01 HEM ? GO:0004497 ... A6ZSR0 27188873
    8470 4ze1:A (2.05) BS01 HEM ? GO:0004497 ... A6ZSR0 27188873
    8471 4ze2:A (2.3) BS01 HEM ? GO:0004497 ... A6ZSR0 27188873
    8472 4ze3:A (2.2) BS01 HEM ? GO:0004497 ... A6ZSR0 27188873
    8473 4zf6:A (2.773) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    8474 4zf8:A (2.766) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    8475 4zfa:A (2.765) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    8476 4zfb:A (2.84) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    8477 4zgx:A (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8478 4zgx:B (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8479 4zgx:C (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8480 4zgx:D (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8481 4zgx:E (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8482 4zgx:F (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8483 4zgx:G (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8484 4zgx:H (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8485 4zgx:I (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8486 4zgx:J (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8487 4zgx:K (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8488 4zgx:L (3.2) BS01 HEM 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 26403853
    8489 4zv8:A (2.24) BS01 HEM 1.14.13.- GO:0004497 ... P20813 26982502
    8490 4zva:A (2.0) BS01 HEM 2.7.7.65 GO:0019825 ... P0AA89 26527135
    8491 4zva:B (2.0) BS01 HEM 2.7.7.65 GO:0019825 ... P0AA89 26527135
    8492 4zvb:A (2.4) BS01 HEM 2.7.7.65 GO:0019825 ... P0AA89 26527135
    8493 4zvb:B (2.4) BS01 HEM 2.7.7.65 GO:0019825 ... P0AA89 26527135
    8494 4zvb:C (2.4) BS01 HEM 2.7.7.65 GO:0019825 ... P0AA89 26527135
    8495 4zvb:D (2.4) BS01 HEM 2.7.7.65 GO:0019825 ... P0AA89 26527135
    8496 5a12:A (1.4) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    8497 5a12:B (1.4) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    8498 5a12:C (1.4) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    8499 5a12:D (1.4) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    8500 5a12:E (1.4) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    8501 5a13:A (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8502 5a13:B (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8503 5a13:C (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8504 5a13:D (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8505 5a13:E (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8506 5a13:F (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8507 5a13:G (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8508 5a13:H (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8509 5a13:I (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8510 5a13:J (1.75) BS01 HEM 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    8511 5a1p:A (2.5) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 26066995
    8512 5a1r:A (2.45) BS02 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 26066995
    8513 5a5i:A (2.0) BS02 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 N/A
    8514 5a5j:A (2.9) BS01 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 N/A
    8515 5ab8:A (1.53) BS01 HEM ? GO:0005344 ... P9WN25 26499089
    8516 5abn:A (2.194) BS03 HEM 1.11.1.16 GO:0000302 ... O94753 26496708
    8517 5abo:A (1.095) BS03 HEM 1.11.1.16 GO:0000302 ... O94753 26496708
    8518 5abq:A (2.293) BS01 HEM 1.11.1.16 GO:0000302 ... O94753 26496708
    8519 5ad4:A (1.981) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8520 5ad4:B (1.981) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8521 5ad5:A (1.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8522 5ad5:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8523 5ad6:A (2.005) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8524 5ad6:B (2.005) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8525 5ad7:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8526 5ad7:B (1.95) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8527 5ad8:A (1.905) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8528 5ad8:B (1.905) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8529 5ad9:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8530 5ad9:B (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8531 5ada:A (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8532 5ada:B (1.98) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8533 5adb:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8534 5adb:B (2.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8535 5adc:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8536 5adc:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8537 5add:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8538 5add:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8539 5ade:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8540 5ade:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 26469213
    8541 5adf:A (1.966) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8542 5adf:B (1.966) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8543 5adf:B (1.966) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8544 5adg:A (1.982) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8545 5adg:B (1.982) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8546 5adg:B (1.982) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8547 5adi:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8548 5adi:B (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8549 5adi:B (2.2) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 26469213
    8550 5adj:A (2.217) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8551 5adj:B (2.217) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8552 5adk:A (1.805) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8553 5adk:B (1.805) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8554 5adl:A (2.205) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8555 5adl:B (2.205) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8556 5adm:A (2.196) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8557 5adm:B (2.196) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8558 5adn:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8559 5adn:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 26469213
    8560 5ag0:A (1.75) BS01 HEM 1.11.1.19
    1.11.1.7
    GO:0004601 ... I2DBY1 N/A
    8561 5ag0:B (1.75) BS01 HEM 1.11.1.19
    1.11.1.7
    GO:0004601 ... I2DBY1 N/A
    8562 5agk:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8563 5agk:B (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8564 5agl:A (1.94) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8565 5agl:B (1.94) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8566 5agm:A (1.84) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8567 5agm:B (1.84) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8568 5agn:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8569 5agn:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8570 5ago:A (1.902) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8571 5ago:B (1.902) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8572 5agp:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8573 5agp:B (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 25874809
    8574 5ajr:A (2.75) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 26643331
    8575 5al9:A (1.37) BS01 HEM 1.11.1.5 GO:0004601 ... Q4Q3K2 25941976
    8576 5ala:A (2.73) BS01 HEM 1.11.1.5 GO:0004601 ... Q4Q3K2 25941976
    8577 5ala:B (2.73) BS01 HEM 1.11.1.5 GO:0004601 ... Q4Q3K2 25941976
    8578 5amm:A (2.09) BS01 HEM 1.11.1.5 GO:0004601 ... Q4Q3K2 26598276
    8579 5amm:B (2.09) BS01 HEM 1.11.1.5 GO:0004601 ... Q4Q3K2 26598276
    8580 5aog:A (1.27) BS01 HEM 1.11.1.7 GO:0004601 ... P84516 26666777
    8581 5az3:A (1.423) BS01 HEM ? N/A Q8NTB8 N/A
    8582 5b2u:A (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8583 5b2u:B (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8584 5b2v:A (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8585 5b2v:B (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8586 5b2w:A (1.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8587 5b2w:B (1.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8588 5b2x:A (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8589 5b2x:B (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8590 5b2y:A (2.01) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8591 5b2y:B (2.01) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    8592 5b4z:A (1.3) BS01 HEM ? N/A Q8NTB8 27240352
    8593 5b50:A (1.65) BS01 HEM ? N/A Q8NTB8 27240352
    8594 5b51:A (1.3) BS01 HEM ? N/A Q8NTB8 27240352
    8595 5b5e:E (1.87) BS01 HEM ? GO:0005506 ... P12238 28102667
    8596 5b5e:F (1.87) BS01 HEM ? GO:0005506 ... P12239 28102667
    8597 5b5e:e (1.87) BS01 HEM ? GO:0005506 ... P12238 28102667
    8598 5b5e:f (1.87) BS01 HEM ? GO:0005506 ... P12239 28102667
    8599 5b5m:C (3.3) BS01 HEM ? GO:0005506 ... D2Z0P5 27933779
    8600 5b5m:C (3.3) BS02 HEM ? GO:0005506 ... D2Z0P5 27933779

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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