Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 2ort:A (1.87) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 17315988
    3202 2owh:A (2.5) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 17385895
    3203 2owj:A (2.5) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 17385895
    3204 2oye:P (2.85) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 17656360
    3205 2oyu:P (2.7) BS02 HEM 1.14.99.1 GO:0004601 ... P05979 17656360
    3206 2oyy:A (2.5) BS01 HEM ? GO:0003674 ... Q5LL55 17395199
    3207 2oyy:A (2.5) BS02 HEM ? GO:0003674 ... Q5LL55 17395199
    3208 2oyy:A (2.5) BS03 HEM ? GO:0003674 ... Q5LL55 17395199
    3209 2oyy:B (2.5) BS01 HEM ? GO:0003674 ... Q5LL55 17395199
    3210 2oyy:B (2.5) BS02 HEM ? GO:0003674 ... Q5LL55 17395199
    3211 2oyy:C (2.5) BS01 HEM ? GO:0003674 ... Q5LL55 17395199
    3212 2oyy:C (2.5) BS02 HEM ? GO:0003674 ... Q5LL55 17395199
    3213 2oyy:D (2.5) BS01 HEM ? GO:0003674 ... Q5LL55 17395199
    3214 2oyy:D (2.5) BS02 HEM ? GO:0003674 ... Q5LL55 17395199
    3215 2oyy:D (2.5) BS03 HEM ? GO:0003674 ... Q5LL55 17395199
    3216 2oyy:E (2.5) BS01 HEM ? GO:0003674 ... Q5LL55 17395199
    3217 2oyy:E (2.5) BS02 HEM ? GO:0003674 ... Q5LL55 17395199
    3218 2oyy:F (2.5) BS01 HEM ? GO:0003674 ... Q5LL55 17395199
    3219 2oyy:F (2.5) BS02 HEM ? GO:0003674 ... Q5LL55 17395199
    3220 2oyy:F (2.5) BS03 HEM ? GO:0003674 ... Q5LL55 17395199
    3221 2oyy:G (2.5) BS01 HEM ? GO:0003674 ... Q5LL55 17395199
    3222 2oyy:G (2.5) BS02 HEM ? GO:0003674 ... Q5LL55 17395199
    3223 2oyy:H (2.5) BS01 HEM ? GO:0003674 ... Q5LL55 17395199
    3224 2oyy:H (2.5) BS02 HEM ? GO:0003674 ... Q5LL55 17395199
    3225 2oyy:H (2.5) BS03 HEM ? GO:0003674 ... Q5LL55 17395199
    3226 2oz0:A (2.8) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 17563122
    3227 2p85:A (2.35) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17428784
    3228 2p85:B (2.35) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17428784
    3229 2p85:C (2.35) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17428784
    3230 2p85:D (2.35) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17428784
    3231 2p85:E (2.35) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17428784
    3232 2p85:F (2.35) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17428784
    3233 2pbj:A (2.8) BS01 HEM 5.3.99.3 GO:0050220 ... Q9N0A4 17585783
    3234 2pbj:B (2.8) BS01 HEM 5.3.99.3 GO:0050220 ... Q9N0A4 17585783
    3235 2pbj:C (2.8) BS01 HEM 5.3.99.3 GO:0050220 ... Q9N0A4 17585783
    3236 2pbj:D (2.8) BS01 HEM 5.3.99.3 GO:0050220 ... Q9N0A4 17585783
    3237 2pcb:A (2.8) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 1334573
    3238 2pcb:B (2.8) BS01 HEM ? GO:0005515 ... P00004 1334573
    3239 2pcb:C (2.8) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 1334573
    3240 2pcc:A (2.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 1334573
    3241 2pcc:B (2.3) BS01 HEM ? GO:0005515 ... P00044 1334573
    3242 2pcc:C (2.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 1334573
    3243 2pcc:D (2.3) BS01 HEM ? GO:0005515 ... P00044 1334573
    3244 2peg:A (1.48) BS01 HEM ? GO:0004601 ... P80043 17545238
    3245 2peg:B (1.48) BS01 HEM ? GO:0004601 ... P80044 17545238
    3246 2pg5:A (1.95) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3247 2pg5:B (1.95) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3248 2pg5:C (1.95) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3249 2pg5:D (1.95) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3250 2pg6:A (2.53) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3251 2pg6:B (2.53) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3252 2pg6:C (2.53) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3253 2pg6:D (2.53) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3254 2pg7:A (2.8) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3255 2pg7:B (2.8) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3256 2pg7:C (2.8) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3257 2pg7:D (2.8) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 17540336
    3258 2pgh:A (2.8) BS01 HEM ? GO:0004601 ... P01965 7990139
    3259 2pgh:B (2.8) BS01 HEM ? GO:0004601 ... P02067 7990139
    3260 2pgh:C (2.8) BS01 HEM ? GO:0004601 ... P01965 7990139
    3261 2pgh:D (2.8) BS01 HEM ? GO:0004601 ... P02067 7990139
    3262 2prc:C (2.45) BS01 HEM ? GO:0005506 ... P07173 9351808
    3263 2prc:C (2.45) BS02 HEM ? GO:0005506 ... P07173 9351808
    3264 2prc:C (2.45) BS03 HEM ? GO:0005506 ... P07173 9351808
    3265 2prc:C (2.45) BS04 HEM ? GO:0005506 ... P07173 9351808
    3266 2pt3:A (2.34) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    3267 2pum:A (2.7) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    3268 2q6n:A (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 17887776
    3269 2q6n:B (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 17887776
    3270 2q6n:C (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 17887776
    3271 2q6n:D (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 17887776
    3272 2q6n:E (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 17887776
    3273 2q6n:F (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 17887776
    3274 2q6n:G (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 17887776
    3275 2q7a:A (2.1) BS01 HEM ? GO:0020037 ... Q06A48 17920629
    3276 2q7a:A (2.1) BS02 HEM ? GO:0020037 ... Q06A48 17920629
    3277 2q7a:B (2.1) BS01 HEM ? GO:0020037 ... Q06A48 17920629
    3278 2q7a:B (2.1) BS02 HEM ? GO:0020037 ... Q06A48 17920629
    3279 2q7a:B (2.1) BS03 HEM ? GO:0020037 ... Q06A48 17920629
    3280 2q8p:A (1.95) BS01 HEM ? GO:0005886 ... Q7A652 17666394
    3281 2q8q:A (2.15) BS01 HEM ? GO:0005886 ... Q7A652 17666394
    3282 2q9f:A (1.9) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 18621681
    3283 2q9g:A (2.4) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 18621681
    3284 2qbl:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 18001135
    3285 2qbm:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 18001135
    3286 2qbn:A (1.75) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 18001135
    3287 2qbo:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 18001135
    3288 2qd2:A (2.2) BS03 HEM 4.98.1.1 GO:0004325 ... P22830 17884090
    3289 2qd2:B (2.2) BS02 HEM 4.98.1.1 GO:0004325 ... P22830 17884090
    3290 2qd3:B (2.2) BS02 HEM 4.98.1.1 GO:0004325 ... P22830 17884090
    3291 2qfk:A (1.62) BS01 HEM ? GO:0004601 ... Q9NAV8 17881827
    3292 2qfk:B (1.62) BS01 HEM ? GO:0004601 ... Q9NAV8 17881827
    3293 2qfn:A (1.62) BS01 HEM ? GO:0004601 ... Q9NAV8 17881827
    3294 2qfn:B (1.62) BS01 HEM ? GO:0004601 ... Q9NAV8 17881827
    3295 2qjk:A (3.1) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3296 2qjk:A (3.1) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3297 2qjk:B (3.1) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3298 2qjk:D (3.1) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3299 2qjk:D (3.1) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3300 2qjk:E (3.1) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3301 2qjk:G (3.1) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3302 2qjk:G (3.1) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3303 2qjk:H (3.1) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3304 2qjk:J (3.1) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3305 2qjk:J (3.1) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3306 2qjk:K (3.1) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3307 2qjk:M (3.1) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3308 2qjk:M (3.1) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3309 2qjk:N (3.1) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3310 2qjk:P (3.1) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3311 2qjk:P (3.1) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3312 2qjk:Q (3.1) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3313 2qjp:A (2.6) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3314 2qjp:A (2.6) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3315 2qjp:B (2.6) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3316 2qjp:D (2.6) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3317 2qjp:D (2.6) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3318 2qjp:E (2.6) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3319 2qjp:G (2.6) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3320 2qjp:G (2.6) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3321 2qjp:H (2.6) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3322 2qjp:J (2.6) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3323 2qjp:J (2.6) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3324 2qjp:K (2.6) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3325 2qjy:A (2.4) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3326 2qjy:A (2.4) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3327 2qjy:B (2.4) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3328 2qjy:D (2.4) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3329 2qjy:D (2.4) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3330 2qjy:E (2.4) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3331 2qjy:G (2.4) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3332 2qjy:G (2.4) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3333 2qjy:H (2.4) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3334 2qjy:J (2.4) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3335 2qjy:J (2.4) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3336 2qjy:K (2.4) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3337 2qjy:M (2.4) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3338 2qjy:M (2.4) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3339 2qjy:N (2.4) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3340 2qjy:P (2.4) BS01 HEM ? GO:0005886 ... Q02761 18039651
    3341 2qjy:P (2.4) BS02 HEM ? GO:0005886 ... Q02761 18039651
    3342 2qjy:Q (2.4) BS01 HEM ? GO:0005886 ... Q02760 18039651
    3343 2qla:A (2.9) BS01 HEM ? GO:0005506 ... P0ABE7 17929927
    3344 2qla:B (2.9) BS01 HEM ? GO:0005506 ... P0ABE7 17929927
    3345 2qla:C (2.9) BS01 HEM ? GO:0005506 ... P0ABE7 17929927
    3346 2qla:D (2.9) BS01 HEM ? GO:0005506 ... P0ABE7 17929927
    3347 2qls:A (3.5) BS01 HEM ? GO:0004601 ... P60529 N/A
    3348 2qls:B (3.5) BS01 HEM ? GO:0004601 ... P60524 N/A
    3349 2qls:C (3.5) BS01 HEM ? GO:0004601 ... P60529 N/A
    3350 2qls:D (3.5) BS01 HEM ? GO:0004601 ... P60524 N/A
    3351 2qmb:A (2.8) BS01 HEM ? GO:0004601 ... P81023 N/A
    3352 2qmb:B (2.8) BS01 HEM ? GO:0005833 ... G1U9Q8 N/A
    3353 2qmb:C (2.8) BS01 HEM ? GO:0004601 ... P81023 N/A
    3354 2qmb:D (2.8) BS01 HEM ? GO:0005833 ... G1U9Q8 N/A
    3355 2qpd:A (3.25) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 18084085
    3356 2qpe:A (2.9) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 18084085
    3357 2qpk:A (2.34) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 27986533
    3358 2qpp:A (2.61) BS01 HEM 1.14.14.18 GO:0004392 ... P30519 17965015
    3359 2qpp:B (2.61) BS01 HEM 1.14.14.18 GO:0004392 ... P30519 17965015
    3360 2qqt:A (2.5) BS03 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    3361 2qrb:A (2.5) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    3362 2qrw:A (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3363 2qrw:B (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3364 2qrw:C (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3365 2qrw:D (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3366 2qrw:E (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3367 2qrw:F (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3368 2qrw:G (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3369 2qrw:H (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3370 2qrw:I (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3371 2qrw:J (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3372 2qrw:K (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3373 2qrw:L (1.93) BS01 HEM ? GO:0005344 ... P9WN23 17887774
    3374 2qsp:A (1.85) BS01 HEM ? GO:0004601 ... P01966 18831041
    3375 2qsp:B (1.85) BS01 HEM ? GO:0004601 ... P02070 18831041
    3376 2qsp:C (1.85) BS01 HEM ? GO:0004601 ... P01966 18831041
    3377 2qsp:D (1.85) BS01 HEM ? GO:0004601 ... P02070 18831041
    3378 2qss:A (1.75) BS01 HEM ? GO:0004601 ... P01966 18831041
    3379 2qss:B (1.75) BS01 HEM ? GO:0004601 ... P02070 18831041
    3380 2qss:C (1.75) BS01 HEM ? GO:0004601 ... P01966 18831041
    3381 2qss:D (1.75) BS01 HEM ? GO:0004601 ... P02070 18831041
    3382 2qu0:A (2.7) BS01 HEM ? GO:0004601 ... P68240 N/A
    3383 2qu0:B (2.7) BS01 HEM ? GO:0004601 ... P02075 N/A
    3384 2qu0:C (2.7) BS01 HEM ? GO:0004601 ... P68240 N/A
    3385 2qu0:D (2.7) BS01 HEM ? GO:0004601 ... P02075 N/A
    3386 2r1h:A (1.9) BS01 HEM ? GO:0004601 ... P14527 18831041
    3387 2r1h:B (1.9) BS01 HEM ? GO:0004601 ... P02141 18831041
    3388 2r1h:C (1.9) BS01 HEM ? GO:0004601 ... P14527 18831041
    3389 2r1h:D (1.9) BS01 HEM ? GO:0004601 ... P02141 18831041
    3390 2r4w:A (1.8) BS01 HEM ? GO:0001666 ... P02213 18001141
    3391 2r4w:A (1.8) BS02 HEM ? GO:0001666 ... P02213 18001141
    3392 2r4w:B (1.8) BS01 HEM ? GO:0001666 ... P02213 18001141
    3393 2r4w:B (1.8) BS02 HEM ? GO:0001666 ... P02213 18001141
    3394 2r4x:A (2.1) BS01 HEM ? GO:0001666 ... P02213 18001141
    3395 2r4x:B (2.1) BS01 HEM ? GO:0001666 ... P02213 18001141
    3396 2r4y:A (2.0) BS01 HEM ? GO:0001666 ... P02213 18001141
    3397 2r4y:A (2.0) BS02 HEM ? GO:0001666 ... P02213 18001141
    3398 2r4y:B (2.0) BS01 HEM ? GO:0001666 ... P02213 18001141
    3399 2r4y:B (2.0) BS02 HEM ? GO:0001666 ... P02213 18001141
    3400 2r4z:A (1.6) BS01 HEM ? GO:0001666 ... P02213 18001141
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218