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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 2cpo:A (2.1) BS08 HEM 1.11.1.10 GO:0004601 ... P04963 8747463
    2602 2cpp:A (1.63) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3656428
    2603 2cth:A (1.67) BS01 HEM ? GO:0009055 ... P00131 N/A
    2604 2cth:A (1.67) BS02 HEM ? GO:0009055 ... P00131 N/A
    2605 2cth:A (1.67) BS03 HEM ? GO:0009055 ... P00131 N/A
    2606 2cth:A (1.67) BS04 HEM ? GO:0009055 ... P00131 N/A
    2607 2cth:B (1.67) BS01 HEM ? GO:0009055 ... P00131 N/A
    2608 2cth:B (1.67) BS02 HEM ? GO:0009055 ... P00131 N/A
    2609 2cth:B (1.67) BS03 HEM ? GO:0009055 ... P00131 N/A
    2610 2cth:B (1.67) BS04 HEM ? GO:0009055 ... P00131 N/A
    2611 2cym:A (2.0) BS01 HEM ? GO:0009055 ... P00131 1663945
    2612 2cym:A (2.0) BS02 HEM ? GO:0009055 ... P00131 1663945
    2613 2cym:A (2.0) BS03 HEM ? GO:0009055 ... P00131 1663945
    2614 2cym:A (2.0) BS04 HEM ? GO:0009055 ... P00131 1663945
    2615 2cyp:A (1.7) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 6092361
    2616 2czs:A (1.5) BS01 HEM ? N/A Q748S4 16156654
    2617 2czs:A (1.5) BS02 HEM ? N/A Q748S4 16156654
    2618 2czs:B (1.5) BS01 HEM ? N/A Q748S4 16156654
    2619 2czs:B (1.5) BS02 HEM ? N/A Q748S4 16156654
    2620 2d09:A (1.8) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 16239228
    2621 2d0e:A (2.15) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 16239228
    2622 2d0t:A (2.3) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 16477023
    2623 2d0t:B (2.3) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 16477023
    2624 2d0u:A (3.4) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 16477023
    2625 2d0u:B (3.4) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 16477023
    2626 2d0w:A (1.98) BS04 HEM ? GO:0005506 ... Q4AE24 16533029
    2627 2d0w:B (1.98) BS04 HEM ? GO:0005506 ... Q4AE24 16533029
    2628 2d2c:A (3.8) BS01 HEM ? GO:0009055 ... P83791 16371475
    2629 2d2c:A (3.8) BS02 HEM ? GO:0009055 ... P83791 16371475
    2630 2d2c:C (3.8) BS03 HEM ? GO:0005506 ... P83793 16371475
    2631 2d2c:N (3.8) BS01 HEM ? GO:0009055 ... P83791 16371475
    2632 2d2c:N (3.8) BS02 HEM ? GO:0009055 ... P83791 16371475
    2633 2d2c:P (3.8) BS03 HEM ? GO:0005506 ... P83793 16371475
    2634 2d2m:A (2.85) BS01 HEM ? GO:0001666 ... Q7M419 16204001
    2635 2d2m:A (2.85) BS02 HEM ? GO:0001666 ... Q7M419 16204001
    2636 2d2m:B (2.85) BS01 HEM ? GO:0005344 ... Q7M413 16204001
    2637 2d2m:C (2.85) BS01 HEM ? GO:0001666 ... Q7M418 16204001
    2638 2d2m:D (2.85) BS01 HEM ? GO:0005344 ... Q5KSB7 16204001
    2639 2d2n:A (3.2) BS01 HEM ? GO:0001666 ... Q7M419 16204001
    2640 2d2n:A (3.2) BS02 HEM ? GO:0001666 ... Q7M419 16204001
    2641 2d2n:B (3.2) BS01 HEM ? GO:0005344 ... Q7M413 16204001
    2642 2d2n:C (3.2) BS01 HEM ? GO:0001666 ... Q7M418 16204001
    2643 2d2n:D (3.2) BS01 HEM ? GO:0005344 ... Q5KSB7 16204001
    2644 2d3q:A (2.8) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    2645 2d3q:B (2.8) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    2646 2d5x:A (1.45) BS01 HEM ? GO:0004601 ... P01958 16403522
    2647 2d5x:B (1.45) BS01 HEM ? GO:0004601 ... P02062 16403522
    2648 2d5z:A (1.45) BS01 HEM ? GO:0004601 ... P69905 16403522
    2649 2d5z:B (1.45) BS01 HEM ? GO:0004601 ... P68871 16403522
    2650 2d5z:C (1.45) BS02 HEM ? GO:0004601 ... P69905 16403522
    2651 2d5z:D (1.45) BS02 HEM ? GO:0004601 ... P68871 16403522
    2652 2d60:A (1.7) BS01 HEM ? GO:0004601 ... P69905 16403522
    2653 2d60:B (1.7) BS01 HEM ? GO:0004601 ... P68871 16403522
    2654 2d60:C (1.7) BS02 HEM ? GO:0004601 ... P69905 16403522
    2655 2d60:D (1.7) BS01 HEM ? GO:0004601 ... P68871 16403522
    2656 2dc3:A (1.68) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-
    GO:0001666 ... Q8WWM9 16699195
    2657 2dc3:B (1.68) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-
    GO:0001666 ... Q8WWM9 16699195
    2658 2dge:A (1.5) BS02 HEM ? GO:0005506 ... Q93VA3 16777100
    2659 2dge:B (1.5) BS02 HEM ? GO:0005506 ... Q93VA3 16777100
    2660 2dge:C (1.5) BS02 HEM ? GO:0005506 ... Q93VA3 16777100
    2661 2dge:D (1.5) BS02 HEM ? GO:0005506 ... Q93VA3 16777100
    2662 2dhb:A (2.8) BS01 HEM ? GO:0004601 ... P01958 5472471
    2663 2dhb:B (2.8) BS01 HEM ? GO:0004601 ... P02062 5472471
    2664 2dkk:A (1.97) BS01 HEM 1.14.19.69 GO:0004497 ... Q9KZF5 17614370
    2665 2dn1:A (1.25) BS01 HEM ? GO:0004601 ... P69905 16765986
    2666 2dn1:B (1.25) BS01 HEM ? GO:0004601 ... P68871 16765986
    2667 2dn2:A (1.25) BS01 HEM ? GO:0004601 ... P69905 16765986
    2668 2dn2:B (1.25) BS01 HEM ? GO:0004601 ... P68871 16765986
    2669 2dn2:C (1.25) BS01 HEM ? GO:0004601 ... P69905 16765986
    2670 2dn2:D (1.25) BS01 HEM ? GO:0004601 ... P68871 16765986
    2671 2dn3:A (1.25) BS01 HEM ? GO:0004601 ... P69905 16765986
    2672 2dn3:B (1.25) BS01 HEM ? GO:0004601 ... P68871 16765986
    2673 2dxm:A (2.1) BS01 HEM ? GO:0004601 ... P69905 17990881
    2674 2dxm:B (2.1) BS01 HEM ? GO:0004601 ... P68871 17990881
    2675 2dxm:C (2.1) BS01 HEM ? GO:0004601 ... P69905 17990881
    2676 2dxm:D (2.1) BS01 HEM ? GO:0004601 ... P68871 17990881
    2677 2dy5:A (2.7) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 17253780
    2678 2e2y:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17567089
    2679 2e39:A (1.3) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 17372351
    2680 2e3a:A (1.3) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 17372351
    2681 2e3b:A (1.3) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 17372351
    2682 2e74:A (3.0) BS02 HEM ? GO:0009055 ... P83791 17498743
    2683 2e74:A (3.0) BS03 HEM ? GO:0009055 ... P83791 17498743
    2684 2e74:A (3.0) BS04 HEM ? GO:0009055 ... P83791 17498743
    2685 2e74:B (3.0) BS02 HEM ? GO:0009055 ... P83792 17498743
    2686 2e74:C (3.0) BS02 HEM ? GO:0005506 ... P83793 17498743
    2687 2e75:A (3.55) BS01 HEM ? GO:0009055 ... P83791 17498743
    2688 2e75:A (3.55) BS02 HEM ? GO:0009055 ... P83791 17498743
    2689 2e75:A (3.55) BS03 HEM ? GO:0009055 ... P83791 17498743
    2690 2e75:B (3.55) BS02 HEM ? GO:0009055 ... P83792 17498743
    2691 2e75:C (3.55) BS02 HEM ? GO:0005506 ... P83793 17498743
    2692 2e76:A (3.41) BS01 HEM ? GO:0009055 ... P83791 17498743
    2693 2e76:A (3.41) BS02 HEM ? GO:0009055 ... P83791 17498743
    2694 2e76:A (3.41) BS03 HEM ? GO:0009055 ... P83791 17498743
    2695 2e76:B (3.41) BS02 HEM ? GO:0009055 ... P83792 17498743
    2696 2e76:C (3.41) BS02 HEM ? GO:0005506 ... P83793 17498743
    2697 2e7e:A (1.85) BS02 HEM 1.14.14.18 GO:0001525 ... P06762 17554165
    2698 2e80:A (1.6) BS03 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2699 2e80:A (1.6) BS04 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2700 2e80:A (1.6) BS05 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2701 2e80:A (1.6) BS06 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2702 2e80:A (1.6) BS07 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2703 2e81:A (2.0) BS02 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2704 2e81:A (2.0) BS03 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2705 2e81:A (2.0) BS04 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2706 2e81:A (2.0) BS05 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2707 2e81:A (2.0) BS06 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 12296741
    2708 2e84:A (2.7) BS04 HEM ? GO:0009055 ... Q8VUI3 N/A
    2709 2e84:A (2.7) BS05 HEM ? GO:0009055 ... Q8VUI3 N/A
    2710 2e84:A (2.7) BS06 HEM ? GO:0009055 ... Q8VUI3 N/A
    2711 2e84:A (2.7) BS07 HEM ? GO:0009055 ... Q8VUI3 N/A
    2712 2e84:A (2.7) BS08 HEM ? GO:0009055 ... Q8VUI3 N/A
    2713 2e84:A (2.7) BS09 HEM ? GO:0009055 ... Q8VUI3 N/A
    2714 2e84:A (2.7) BS10 HEM ? GO:0009055 ... Q8VUI3 N/A
    2715 2e84:A (2.7) BS11 HEM ? GO:0009055 ... Q8VUI3 N/A
    2716 2e84:A (2.7) BS12 HEM ? GO:0009055 ... Q8VUI3 N/A
    2717 2e84:A (2.7) BS13 HEM ? GO:0009055 ... Q8VUI3 N/A
    2718 2e84:A (2.7) BS14 HEM ? GO:0009055 ... Q8VUI3 N/A
    2719 2e84:A (2.7) BS15 HEM ? GO:0009055 ... Q8VUI3 N/A
    2720 2e84:A (2.7) BS16 HEM ? GO:0009055 ... Q8VUI3 N/A
    2721 2e84:A (2.7) BS17 HEM ? GO:0009055 ... Q8VUI3 N/A
    2722 2e84:A (2.7) BS18 HEM ? GO:0009055 ... Q8VUI3 N/A
    2723 2e84:A (2.7) BS19 HEM ? GO:0009055 ... Q8VUI3 N/A
    2724 2e9e:A (3.25) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    2725 2e9e:B (3.25) BS03 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    2726 2efb:A (2.94) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    2727 2efb:B (2.94) BS03 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    2728 2eha:A (3.3) BS03 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    2729 2eha:B (3.3) BS03 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    2730 2eu7:X (1.2) BS01 HEM ? GO:0005576 ... Q26241 N/A
    2731 2eun:A (1.7) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2732 2euo:A (1.45) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2733 2eup:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2734 2euq:A (1.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2735 2eur:A (1.39) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2736 2eus:A (1.55) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2737 2eut:A (1.12) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2738 2euu:A (1.45) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2739 2evk:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 16519512
    2740 2evp:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 16519512
    2741 2ewi:A (1.0) BS01 HEM ? GO:0009055 ... P00132 N/A
    2742 2ewi:A (1.0) BS02 HEM ? GO:0009055 ... P00132 N/A
    2743 2ewi:A (1.0) BS03 HEM ? GO:0009055 ... P00132 N/A
    2744 2ewi:A (1.0) BS04 HEM ? GO:0009055 ... P00132 N/A
    2745 2ewk:A (1.0) BS01 HEM ? GO:0009055 ... P00132 18702516
    2746 2ewk:A (1.0) BS02 HEM ? GO:0009055 ... P00132 18702516
    2747 2ewk:A (1.0) BS03 HEM ? GO:0009055 ... P00132 18702516
    2748 2ewk:A (1.0) BS04 HEM ? GO:0009055 ... P00132 18702516
    2749 2ewu:A (1.1) BS01 HEM ? GO:0009055 ... P00132 N/A
    2750 2ewu:A (1.1) BS02 HEM ? GO:0009055 ... P00132 N/A
    2751 2ewu:A (1.1) BS03 HEM ? GO:0009055 ... P00132 N/A
    2752 2ewu:A (1.1) BS04 HEM ? GO:0009055 ... P00132 N/A
    2753 2f9q:A (3.002) BS01 HEM 1.14.14.- GO:0004497 ... P10635 16352597
    2754 2f9q:B (3.002) BS01 HEM 1.14.14.- GO:0004497 ... P10635 16352597
    2755 2f9q:C (3.002) BS01 HEM 1.14.14.- GO:0004497 ... P10635 16352597
    2756 2f9q:D (3.002) BS01 HEM 1.14.14.- GO:0004497 ... P10635 16352597
    2757 2fal:A (1.8) BS02 HEM ? GO:0005344 ... P02210 8411158
    2758 2fam:A (2.0) BS02 HEM ? GO:0005344 ... P02210 8411158
    2759 2fbw:C (2.06) BS01 HEM ? GO:0005739 ... D0VWW3 16371358
    2760 2fbw:D (2.06) BS01 HEM ? GO:0005740 ... Q5ZIS0 16371358
    2761 2fbw:P (2.06) BS01 HEM ? GO:0005739 ... D0VWW3 16371358
    2762 2fbw:Q (2.06) BS01 HEM ? GO:0005740 ... Q5ZIS0 16371358
    2763 2fbz:X (2.1) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 16489746
    2764 2fc1:A (2.0) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 16489746
    2765 2fc2:A (2.2) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 16489746
    2766 2fc2:B (2.2) BS04 HEM 1.14.14.47 GO:0004517 ... O34453 16489746
    2767 2fdu:A (1.85) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2768 2fdu:B (1.85) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2769 2fdu:C (1.85) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2770 2fdu:D (1.85) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2771 2fdv:A (1.65) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2772 2fdv:B (1.65) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2773 2fdv:C (1.65) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2774 2fdv:D (1.65) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2775 2fdw:A (2.05) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2776 2fdw:B (2.05) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2777 2fdw:C (2.05) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2778 2fdw:D (2.05) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2779 2fdy:A (1.95) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2780 2fdy:B (1.95) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2781 2fdy:C (1.95) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2782 2fdy:D (1.95) BS01 HEM 1.14.14.- GO:0004497 ... P11509 17125252
    2783 2ffn:A (1.8) BS01 HEM ? GO:0009055 ... P00132 27857559
    2784 2ffn:A (1.8) BS02 HEM ? GO:0009055 ... P00132 27857559
    2785 2ffn:A (1.8) BS03 HEM ? GO:0009055 ... P00132 27857559
    2786 2ffn:A (1.8) BS04 HEM ? GO:0009055 ... P00132 27857559
    2787 2fkz:A (2.0) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2788 2fkz:B (2.0) BS04 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2789 2fkz:C (2.0) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2790 2fkz:D (2.0) BS04 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2791 2fkz:E (2.0) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2792 2fkz:F (2.0) BS01 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2793 2fkz:G (2.0) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2794 2fkz:H (2.0) BS04 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2795 2fl0:A (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2796 2fl0:B (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2797 2fl0:C (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2798 2fl0:D (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2799 2fl0:E (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    2800 2fl0:F (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... P22759 16584178

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218