Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 1y4r:C (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    2202 1y4r:D (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    2203 1y4v:A (1.84) BS01 HEM ? GO:0004601 ... P69905 15835899
    2204 1y4v:B (1.84) BS01 HEM ? GO:0004601 ... P68871 15835899
    2205 1y4v:C (1.84) BS01 HEM ? GO:0004601 ... P69905 15835899
    2206 1y4v:D (1.84) BS01 HEM ? GO:0004601 ... P68871 15835899
    2207 1y4z:B (2.0) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 15615728
    2208 1y4z:C (2.0) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    2209 1y4z:C (2.0) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    2210 1y5f:A (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    2211 1y5f:B (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    2212 1y5f:C (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    2213 1y5f:D (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    2214 1y5i:B (1.9) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 15615728
    2215 1y5i:C (1.9) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    2216 1y5i:C (1.9) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    2217 1y5j:A (2.03) BS01 HEM ? GO:0004601 ... P69905 15835899
    2218 1y5j:B (2.03) BS01 HEM ? GO:0004601 ... P68871 15835899
    2219 1y5j:C (2.03) BS01 HEM ? GO:0004601 ... P69905 15835899
    2220 1y5j:D (2.03) BS01 HEM ? GO:0004601 ... P68871 15835899
    2221 1y5k:A (2.2) BS01 HEM ? GO:0004601 ... P69905 15835899
    2222 1y5k:B (2.2) BS01 HEM ? GO:0004601 ... P68871 15835899
    2223 1y5k:C (2.2) BS01 HEM ? GO:0004601 ... P69905 15835899
    2224 1y5k:D (2.2) BS01 HEM ? GO:0004601 ... P68871 15835899
    2225 1y5l:B (2.5) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 15615728
    2226 1y5l:C (2.5) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    2227 1y5n:B (2.5) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 15615728
    2228 1y5n:C (2.5) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    2229 1y5n:C (2.5) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    2230 1y7c:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2231 1y7c:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2232 1y7c:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2233 1y7c:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2234 1y7d:A (1.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    2235 1y7d:B (1.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    2236 1y7d:C (1.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    2237 1y7d:D (1.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    2238 1y7g:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2239 1y7g:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2240 1y7g:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2241 1y7g:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2242 1y7z:A (1.98) BS01 HEM ? GO:0004601 ... P69905 15835899
    2243 1y7z:B (1.98) BS01 HEM ? GO:0004601 ... P68871 15835899
    2244 1y7z:C (1.98) BS01 HEM ? GO:0004601 ... P69905 15835899
    2245 1y7z:D (1.98) BS01 HEM ? GO:0004601 ... P68871 15835899
    2246 1y83:A (1.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    2247 1y83:B (1.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    2248 1y83:C (1.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    2249 1y83:D (1.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    2250 1y85:A (2.13) BS01 HEM ? GO:0004601 ... P69905 15835899
    2251 1y85:B (2.13) BS01 HEM ? GO:0004601 ... P68871 15835899
    2252 1y85:C (2.13) BS01 HEM ? GO:0004601 ... P69905 15835899
    2253 1y85:D (2.13) BS01 HEM ? GO:0004601 ... P68871 15835899
    2254 1y8h:A (3.1) BS01 HEM ? GO:0004601 ... P01958 15887226
    2255 1y8h:B (3.1) BS01 HEM ? GO:0004601 ... P02062 15887226
    2256 1y8h:C (3.1) BS01 HEM ? GO:0004601 ... P01958 15887226
    2257 1y8h:D (3.1) BS01 HEM ? GO:0004601 ... P02062 15887226
    2258 1y8i:A (2.6) BS01 HEM ? GO:0004601 ... P01958 15887226
    2259 1y8i:B (2.6) BS01 HEM ? GO:0004601 ... P02062 15887226
    2260 1y8i:C (2.6) BS01 HEM ? GO:0004601 ... P01958 15887226
    2261 1y8i:D (2.6) BS01 HEM ? GO:0004601 ... P02062 15887226
    2262 1y8k:A (2.3) BS01 HEM ? GO:0004601 ... P01958 15887226
    2263 1y8k:B (2.3) BS01 HEM ? GO:0004601 ... P02062 15887226
    2264 1y8k:C (2.3) BS01 HEM ? GO:0004601 ... P01958 15887226
    2265 1y8k:D (2.3) BS01 HEM ? GO:0004601 ... P02062 15887226
    2266 1y8w:A (2.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    2267 1y8w:B (2.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    2268 1y8w:C (2.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    2269 1y8w:D (2.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    2270 1yca:A (2.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 8241160
    2271 1yca:B (2.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 8241160
    2272 1ycb:A (2.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 8241160
    2273 1ycb:B (2.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 8241160
    2274 1ydz:A (3.3) BS01 HEM ? GO:0004601 ... P69905 15835899
    2275 1ydz:B (3.3) BS01 HEM ? GO:0004601 ... P68871 15835899
    2276 1ydz:C (3.3) BS01 HEM ? GO:0004601 ... P69905 15835899
    2277 1ydz:D (3.3) BS01 HEM ? GO:0004601 ... P68871 15835899
    2278 1ye0:A (2.5) BS01 HEM ? GO:0004601 ... P69905 15835899
    2279 1ye0:B (2.5) BS01 HEM ? GO:0004601 ... P68871 15835899
    2280 1ye0:C (2.5) BS01 HEM ? GO:0004601 ... P69905 15835899
    2281 1ye0:D (2.5) BS01 HEM ? GO:0004601 ... P68871 15835899
    2282 1ye1:A (4.5) BS01 HEM ? GO:0004601 ... P69905 15835899
    2283 1ye1:B (4.5) BS01 HEM ? GO:0004601 ... P68871 15835899
    2284 1ye1:C (4.5) BS01 HEM ? GO:0004601 ... P69905 15835899
    2285 1ye1:D (4.5) BS01 HEM ? GO:0004601 ... P68871 15835899
    2286 1ye2:A (1.8) BS01 HEM ? GO:0004601 ... P69905 15835899
    2287 1ye2:B (1.8) BS01 HEM ? GO:0004601 ... P68871 15835899
    2288 1ye2:C (1.8) BS01 HEM ? GO:0004601 ... P69905 15835899
    2289 1ye2:D (1.8) BS01 HEM ? GO:0004601 ... P68871 15835899
    2290 1yen:A (2.8) BS01 HEM ? GO:0004601 ... P69905 15835899
    2291 1yen:B (2.8) BS01 HEM ? GO:0004601 ... P68871 15835899
    2292 1yen:C (2.8) BS01 HEM ? GO:0004601 ... P69905 15835899
    2293 1yen:D (2.8) BS01 HEM ? GO:0004601 ... P68871 15835899
    2294 1yeo:A (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    2295 1yeo:B (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    2296 1yeo:C (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    2297 1yeo:D (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    2298 1yeq:A (2.75) BS01 HEM ? GO:0004601 ... P69905 15835899
    2299 1yeq:B (2.75) BS01 HEM ? GO:0004601 ... P68871 15835899
    2300 1yeq:C (2.75) BS01 HEM ? GO:0004601 ... P69905 15835899
    2301 1yeq:D (2.75) BS01 HEM ? GO:0004601 ... P68871 15835899
    2302 1yeu:A (2.12) BS01 HEM ? GO:0004601 ... P69905 15835899
    2303 1yeu:B (2.12) BS01 HEM ? GO:0004601 ... P68871 15835899
    2304 1yeu:C (2.12) BS01 HEM ? GO:0004601 ... P69905 15835899
    2305 1yeu:D (2.12) BS01 HEM ? GO:0004601 ... P68871 15835899
    2306 1yev:A (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    2307 1yev:B (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    2308 1yev:C (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    2309 1yev:D (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    2310 1yff:A (2.4) BS01 HEM ? GO:0004601 ... P69905 N/A
    2311 1yff:B (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    2312 1yff:C (2.4) BS01 HEM ? GO:0004601 ... P69905 N/A
    2313 1yff:D (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    2314 1yff:E (2.4) BS01 HEM ? GO:0004601 ... P69905 N/A
    2315 1yff:F (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    2316 1yff:G (2.4) BS01 HEM ? GO:0004601 ... P69905 N/A
    2317 1yff:H (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    2318 1yg5:A (2.7) BS01 HEM ? GO:0004601 ... P69905 15835899
    2319 1yg5:B (2.7) BS01 HEM ? GO:0004601 ... P68871 15835899
    2320 1yg5:C (2.7) BS01 HEM ? GO:0004601 ... P69905 15835899
    2321 1yg5:D (2.7) BS01 HEM ? GO:0004601 ... P68871 15835899
    2322 1ygd:B (2.73) BS01 HEM ? GO:0004601 ... P68871 15835899
    2323 1ygd:D (2.73) BS01 HEM ? GO:0004601 ... P68871 15835899
    2324 1ygf:A (2.7) BS01 HEM ? GO:0004601 ... P69905 15835899
    2325 1ygf:B (2.7) BS01 HEM ? GO:0004601 ... P68871 15835899
    2326 1ygf:C (2.7) BS01 HEM ? GO:0004601 ... P69905 15835899
    2327 1ygf:D (2.7) BS01 HEM ? GO:0004601 ... P68871 15835899
    2328 1yh9:A (2.2) BS01 HEM ? GO:0004601 ... P69905 15835899
    2329 1yh9:B (2.2) BS01 HEM ? GO:0004601 ... P68871 15835899
    2330 1yh9:C (2.2) BS01 HEM ? GO:0004601 ... P69905 15835899
    2331 1yh9:D (2.2) BS01 HEM ? GO:0004601 ... P68871 15835899
    2332 1yhe:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2333 1yhe:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2334 1yhe:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2335 1yhe:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2336 1yhr:A (2.6) BS01 HEM ? GO:0004601 ... P69905 15835899
    2337 1yhr:B (2.6) BS02 HEM ? GO:0004601 ... P68871 15835899
    2338 1yhr:C (2.6) BS01 HEM ? GO:0004601 ... P69905 15835899
    2339 1yhr:D (2.6) BS02 HEM ? GO:0004601 ... P68871 15835899
    2340 1yhu:A (3.15) BS01 HEM ? GO:0005344 ... Q8IFK4 15710902
    2341 1yhu:B (3.15) BS03 HEM ? GO:0001666 ... P80592 15710902
    2342 1yhu:C (3.15) BS01 HEM ? GO:0001666 ... Q8IFK2 15710902
    2343 1yhu:D (3.15) BS01 HEM ? GO:0005344 ... Q8IFJ9 15710902
    2344 1yhu:E (3.15) BS01 HEM ? GO:0005344 ... Q8IFK4 15710902
    2345 1yhu:F (3.15) BS03 HEM ? GO:0001666 ... P80592 15710902
    2346 1yhu:G (3.15) BS01 HEM ? GO:0001666 ... Q8IFK2 15710902
    2347 1yhu:H (3.15) BS01 HEM ? GO:0005344 ... Q8IFJ9 15710902
    2348 1yhu:I (3.15) BS01 HEM ? GO:0005344 ... Q8IFK4 15710902
    2349 1yhu:J (3.15) BS03 HEM ? GO:0001666 ... P80592 15710902
    2350 1yhu:K (3.15) BS01 HEM ? GO:0001666 ... Q8IFK2 15710902
    2351 1yhu:L (3.15) BS01 HEM ? GO:0005344 ... Q8IFJ9 15710902
    2352 1yhu:M (3.15) BS01 HEM ? GO:0005344 ... Q8IFK4 15710902
    2353 1yhu:N (3.15) BS03 HEM ? GO:0001666 ... P80592 15710902
    2354 1yhu:O (3.15) BS01 HEM ? GO:0001666 ... Q8IFK2 15710902
    2355 1yhu:P (3.15) BS01 HEM ? GO:0005344 ... Q8IFJ9 15710902
    2356 1yhu:Q (3.15) BS01 HEM ? GO:0005344 ... Q8IFK4 15710902
    2357 1yhu:R (3.15) BS03 HEM ? GO:0001666 ... P80592 15710902
    2358 1yhu:S (3.15) BS01 HEM ? GO:0001666 ... Q8IFK2 15710902
    2359 1yhu:T (3.15) BS01 HEM ? GO:0005344 ... Q8IFJ9 15710902
    2360 1yhu:U (3.15) BS01 HEM ? GO:0005344 ... Q8IFK4 15710902
    2361 1yhu:V (3.15) BS03 HEM ? GO:0001666 ... P80592 15710902
    2362 1yhu:W (3.15) BS01 HEM ? GO:0001666 ... Q8IFK2 15710902
    2363 1yhu:X (3.15) BS01 HEM ? GO:0005344 ... Q8IFJ9 15710902
    2364 1yie:A (2.4) BS01 HEM ? GO:0004601 ... P69905 15835899
    2365 1yie:B (2.4) BS01 HEM ? GO:0004601 ... P68871 15835899
    2366 1yie:C (2.4) BS01 HEM ? GO:0004601 ... P69905 15835899
    2367 1yie:D (2.4) BS01 HEM ? GO:0004601 ... P68871 15835899
    2368 1yih:A (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    2369 1yih:B (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    2370 1yih:C (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    2371 1yih:D (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    2372 1yjh:A (1.65) BS01 HEM ? GO:0004439 ... O76745 N/A
    2373 1yma:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 8175669
    2374 1ymb:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 2359126
    2375 1yq3:C (2.2) BS03 HEM 1.3.5.1 GO:0005739 ... D0VWW3 16371358
    2376 1yq3:D (2.2) BS01 HEM 1.3.5.1 GO:0005740 ... Q5ZIS0 16371358
    2377 1yq4:C (2.33) BS02 HEM 1.3.5.1 GO:0005739 ... D0VWW3 16371358
    2378 1yq4:D (2.33) BS01 HEM 1.3.5.1 GO:0005740 ... Q5ZIS0 16371358
    2379 1yqo:A (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 16403573
    2380 1yqo:B (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 16403573
    2381 1yqp:A (1.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 16403573
    2382 1yqp:B (1.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 16403573
    2383 1yrc:A (1.4) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15858263
    2384 1yrd:A (1.7) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15858263
    2385 1yvq:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    2386 1yvq:B (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    2387 1yvq:C (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    2388 1yvq:D (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    2389 1yvt:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    2390 1yvt:B (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    2391 1ywa:A (0.89) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 16171383
    2392 1ywb:A (0.97) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 16171383
    2393 1ywc:A (1.0) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 16171383
    2394 1ywd:A (1.08) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 16171383
    2395 1yyd:A (1.45) BS05 HEM 1.11.1.13 GO:0000302 ... Q02567 15850380
    2396 1yyg:A (1.6) BS05 HEM 1.11.1.13 GO:0000302 ... Q02567 15850380
    2397 1yzi:A (2.07) BS01 HEM ? GO:0004601 ... P69905 15938624
    2398 1yzi:B (2.07) BS01 HEM ? GO:0004601 ... P68871 15938624
    2399 1yzp:A (1.6) BS04 HEM 1.11.1.13 GO:0000302 ... Q02567 15850380
    2400 1yzr:A (1.6) BS04 HEM 1.11.1.13 GO:0000302 ... Q02567 15850380

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218