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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 101m:A (2.07) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    2 102m:A (1.84) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    3 103m:A (2.07) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    4 104m:A (1.71) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    5 105m:A (2.02) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    6 106m:A (1.99) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    7 107m:A (2.09) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    8 108m:A (2.67) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    9 109m:A (1.83) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    10 110m:A (1.77) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    11 111m:A (1.88) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    12 112m:A (2.34) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    13 155c:A (2.5) BS01 HEM ? GO:0009055 ... P00096 180013
    14 19hc:A (1.8) BS01 HEM ? GO:0009055 ... Q9RN68 10368280
    15 19hc:A (1.8) BS02 HEM ? GO:0009055 ... Q9RN68 10368280
    16 19hc:A (1.8) BS03 HEM ? GO:0009055 ... Q9RN68 10368280
    17 19hc:A (1.8) BS04 HEM ? GO:0009055 ... Q9RN68 10368280
    18 19hc:A (1.8) BS05 HEM ? GO:0009055 ... Q9RN68 10368280
    19 19hc:A (1.8) BS06 HEM ? GO:0009055 ... Q9RN68 10368280
    20 19hc:A (1.8) BS07 HEM ? GO:0009055 ... Q9RN68 10368280
    21 19hc:A (1.8) BS08 HEM ? GO:0009055 ... Q9RN68 10368280
    22 19hc:A (1.8) BS09 HEM ? GO:0009055 ... Q9RN68 10368280
    23 19hc:A (1.8) BS10 HEM ? GO:0009055 ... Q9RN68 10368280
    24 19hc:B (1.8) BS01 HEM ? GO:0009055 ... Q9RN68 10368280
    25 19hc:B (1.8) BS02 HEM ? GO:0009055 ... Q9RN68 10368280
    26 19hc:B (1.8) BS03 HEM ? GO:0009055 ... Q9RN68 10368280
    27 19hc:B (1.8) BS04 HEM ? GO:0009055 ... Q9RN68 10368280
    28 19hc:B (1.8) BS05 HEM ? GO:0009055 ... Q9RN68 10368280
    29 19hc:B (1.8) BS06 HEM ? GO:0009055 ... Q9RN68 10368280
    30 19hc:B (1.8) BS07 HEM ? GO:0009055 ... Q9RN68 10368280
    31 19hc:B (1.8) BS08 HEM ? GO:0009055 ... Q9RN68 10368280
    32 19hc:B (1.8) BS09 HEM ? GO:0009055 ... Q9RN68 10368280
    33 1a00:A (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    34 1a00:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    35 1a00:C (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    36 1a00:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    37 1a01:A (1.8) BS01 HEM ? GO:0004601 ... P69905 9521756
    38 1a01:B (1.8) BS01 HEM ? GO:0004601 ... P68871 9521756
    39 1a01:C (1.8) BS01 HEM ? GO:0004601 ... P69905 9521756
    40 1a01:D (1.8) BS01 HEM ? GO:0004601 ... P68871 9521756
    41 1a0u:A (2.14) BS01 HEM ? GO:0004601 ... P69905 9521756
    42 1a0u:B (2.14) BS01 HEM ? GO:0004601 ... P68871 9521756
    43 1a0u:C (2.14) BS01 HEM ? GO:0004601 ... P69905 9521756
    44 1a0u:D (2.14) BS01 HEM ? GO:0004601 ... P68871 9521756
    45 1a0z:A (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    46 1a0z:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    47 1a0z:C (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    48 1a0z:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    49 1a2f:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    50 1a2g:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    51 1a3n:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    52 1a3n:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    53 1a3n:C (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    54 1a3n:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    55 1a3o:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    56 1a3o:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    57 1a3o:C (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    58 1a3o:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    59 1a4e:A (2.4) BS02 HEM 1.11.1.6 GO:0000302 ... P15202 9931255
    60 1a4e:B (2.4) BS02 HEM 1.11.1.6 GO:0000302 ... P15202 9931255
    61 1a4e:C (2.4) BS02 HEM 1.11.1.6 GO:0000302 ... P15202 9931255
    62 1a4e:D (2.4) BS02 HEM 1.11.1.6 GO:0000302 ... P15202 9931255
    63 1a4f:A (2.0) BS01 HEM ? GO:0004601 ... P01990 8568892
    64 1a4f:B (2.0) BS01 HEM ? GO:0004601 ... P02118 8568892
    65 1a6g:A (1.15) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10512835
    66 1a6k:A (1.1) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10512835
    67 1a6m:A (1.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10512835
    68 1a6n:A (1.15) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10512835
    69 1a7v:A (2.3) BS01 HEM ? GO:0005506 ... P00149 9826513
    70 1a7v:B (2.3) BS01 HEM ? GO:0005506 ... P00149 9826513
    71 1a9w:A (2.9) BS01 HEM ? GO:0004601 ... P69905 9665850
    72 1a9w:C (2.9) BS01 HEM ? GO:0004601 ... P69905 9665850
    73 1a9w:E (2.9) BS01 HEM ? GO:0004601 ... P02100 9665850
    74 1a9w:F (2.9) BS01 HEM ? GO:0004601 ... P02100 9665850
    75 1aa4:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    76 1abs:A (1.5) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7935843
    77 1abw:A (2.0) BS05 HEM ? GO:0004601 ... P69905 9032082
    78 1abw:A (2.0) BS06 HEM ? GO:0004601 ... P69905 9032082
    79 1abw:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9032082
    80 1abw:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9032082
    81 1aby:A (2.6) BS01 HEM ? GO:0004601 ... P69905 9032082
    82 1aby:A (2.6) BS02 HEM ? GO:0004601 ... P69905 9032082
    83 1aby:B (2.6) BS01 HEM ? GO:0004601 ... P68871 9032082
    84 1aby:D (2.6) BS01 HEM ? GO:0004601 ... P68871 9032082
    85 1ac4:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    86 1ac8:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    87 1aeb:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    88 1aed:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    89 1aee:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    90 1aef:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    91 1aeg:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    92 1aeh:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    93 1aej:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    94 1aek:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    95 1aem:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    96 1aen:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    97 1aeo:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    98 1aeq:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    99 1aes:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    100 1aet:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    101 1aeu:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    102 1aev:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 9305956
    103 1aj9:A (2.2) BS02 HEM ? GO:0004601 ... P69905 9761903
    104 1aj9:B (2.2) BS01 HEM ? GO:0004601 ... P68871 9761903
    105 1ajg:A (1.69) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7634074
    106 1ajh:A (1.69) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7634074
    107 1akd:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 9357977
    108 1aof:A (2.0) BS01 HEM 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    109 1aof:B (2.0) BS01 HEM 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    110 1aom:B (1.8) BS01 HEM 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    111 1aoq:A (1.8) BS01 HEM 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    112 1aoq:B (1.8) BS01 HEM 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    113 1apx:A (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    114 1apx:B (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    115 1apx:C (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    116 1apx:D (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    117 1aqa:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9363779
    118 1aqe:A (2.2) BS01 HEM ? GO:0009055 ... P38554 9485359
    119 1aqe:A (2.2) BS02 HEM ? GO:0009055 ... P38554 9485359
    120 1aqe:A (2.2) BS03 HEM ? GO:0009055 ... P38554 9485359
    121 1aqe:A (2.2) BS04 HEM ? GO:0009055 ... P38554 9485359
    122 1arp:A (1.9) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 8289254
    123 1aru:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    124 1arv:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    125 1arw:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    126 1arx:A (1.9) BS05 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    127 1ary:A (1.9) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    128 1ash:A (2.15) BS01 HEM ? GO:0005506 ... P28316 7753786
    129 1atj:A (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    130 1atj:B (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    131 1atj:C (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    132 1atj:D (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    133 1atj:E (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    134 1atj:F (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    135 1aw3:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9425037
    136 1awp:A (2.0) BS01 HEM ? GO:0020037 ... P04166 9484218
    137 1awp:B (2.0) BS01 HEM ? GO:0020037 ... P04166 9484218
    138 1axx:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9425037
    139 1azi:A (2.0) BS02 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 9576852
    140 1b0b:A (1.43) BS02 HEM ? GO:0005576 ... P41260 10423453
    141 1b2v:A (1.9) BS01 HEM ? GO:0005515 ... Q54450 10360351
    142 1b5a:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9622481
    143 1b5b:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9622481
    144 1b5m:A (2.7) BS01 HEM ? GO:0020037 ... P04166 8973214
    145 1b80:A (1.73) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    146 1b80:B (1.73) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    147 1b82:A (1.8) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    148 1b82:B (1.8) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    149 1b85:A (1.85) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    150 1b85:B (1.85) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    151 1b86:A (2.5) BS01 HEM ? GO:0004601 ... P69905 8377203
    152 1b86:B (2.5) BS01 HEM ? GO:0004601 ... P68871 8377203
    153 1b86:C (2.5) BS01 HEM ? GO:0004601 ... P69905 8377203
    154 1b86:D (2.5) BS01 HEM ? GO:0004601 ... P68871 8377203
    155 1bab:A (1.5) BS01 HEM ? GO:0004601 ... P69905 1618774
    156 1bab:B (1.5) BS01 HEM ? GO:0004601 ... P68871 1618774
    157 1bab:C (1.5) BS01 HEM ? GO:0004601 ... P69905 1618774
    158 1bab:D (1.5) BS01 HEM ? GO:0004601 ... P68871 1618774
    159 1bbb:A (1.7) BS01 HEM ? GO:0004601 ... P69905 1512262
    160 1bbb:B (1.7) BS01 HEM ? GO:0004601 ... P68871 1512262
    161 1bbb:C (1.7) BS01 HEM ? GO:0004601 ... P69905 1512262
    162 1bbb:D (1.7) BS01 HEM ? GO:0004601 ... P68871 1512262
    163 1bcc:C (3.16) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    164 1bcc:C (3.16) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    165 1bcc:D (3.16) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 9565029
    166 1bcf:A (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    167 1bcf:B (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    168 1bcf:C (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    169 1bcf:D (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    170 1bcf:E (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    171 1bcf:F (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    172 1bcf:G (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    173 1bcf:H (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    174 1bcf:I (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    175 1bcf:J (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    176 1bcf:K (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    177 1bcf:L (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    178 1be3:C (3.0) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    179 1be3:C (3.0) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    180 1bej:A (2.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    181 1bek:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    182 1bem:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    183 1beq:A (2.16) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    184 1bes:A (2.0) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    185 1bfr:A (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    186 1bfr:B (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    187 1bfr:C (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    188 1bfr:D (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    189 1bfr:E (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    190 1bfr:F (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    191 1bfr:G (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    192 1bfr:H (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    193 1bfr:I (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    194 1bfr:J (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    195 1bfr:K (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    196 1bfr:L (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    197 1bfr:M (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    198 1bfr:N (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    199 1bfr:O (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    200 1bfr:P (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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