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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 6a3l:B (2.14) BS01 HEC ? GO:0005506 ... D4ZGZ2 30689055
    2802 6adq:C (3.5) BS02 HEC 7.1.1.8 GO:0005506 ... I7FPH1 30361386
    2803 6adq:C (3.5) BS03 HEC 7.1.1.8 GO:0005506 ... I7FPH1 30361386
    2804 6adq:K (3.5) BS02 HEC ? N/A A0R562 30361386
    2805 6adq:O (3.5) BS02 HEC 7.1.1.8 GO:0005506 ... I7FPH1 30361386
    2806 6adq:O (3.5) BS03 HEC 7.1.1.8 GO:0005506 ... I7FPH1 30361386
    2807 6adq:W (3.5) BS03 HEC ? N/A A0R562 30361386
    2808 6amg:A (1.45) BS01 HEC ? N/A F9ZFJ0 29211462
    2809 6amg:A (1.45) BS02 HEC ? N/A F9ZFJ0 29211462
    2810 6amg:B (1.45) BS01 HEC ? N/A F9ZFJ0 29211462
    2811 6amg:B (1.45) BS02 HEC ? N/A F9ZFJ0 29211462
    2812 6btm:A (3.4) BS01 HEC ? GO:0009055 ... A5FJF1 29695868
    2813 6btm:A (3.4) BS02 HEC ? GO:0009055 ... A5FJF1 29695868
    2814 6btm:A (3.4) BS03 HEC ? GO:0009055 ... A5FJF1 29695868
    2815 6btm:A (3.4) BS04 HEC ? GO:0009055 ... A5FJF1 29695868
    2816 6btm:A (3.4) BS05 HEC ? GO:0009055 ... A5FJF1 29695868
    2817 6btm:E (3.4) BS02 HEC ? GO:0009055 ... A5FJF5 29695868
    2818 6c4w:A (2.4) BS01 HEC ? GO:0005739 ... A0A3B6UES8 N/A
    2819 6cuk:A (1.47) BS01 HEC ? GO:0009055 ... B3FQS5 29946033
    2820 6cun:A (1.29) BS01 HEC ? GO:0009055 ... B3FQS5 29946033
    2821 6dhe:V (2.05) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2822 6dhe:v (2.05) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2823 6dhf:V (2.08) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2824 6dhf:v (2.08) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2825 6dhg:V (2.5) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2826 6dhg:v (2.5) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2827 6dhh:V (2.2) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2828 6dhh:v (2.2) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2829 6dho:V (2.07) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2830 6dho:v (2.07) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2831 6dhp:V (2.04) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2832 6dhp:v (2.04) BS01 HEC ? GO:0005506 ... P0A386 30405241
    2833 6dhy:A (2.22) BS01 HEC ? GO:0005506 ... P0ABE7 29996654
    2834 6dhy:B (2.22) BS01 HEC ? GO:0005506 ... P0ABE7 29996654
    2835 6dhy:C (2.22) BS01 HEC ? GO:0005506 ... P0ABE7 29996654
    2836 6dhy:D (2.22) BS01 HEC ? GO:0005506 ... P0ABE7 29996654
    2837 6dhz:A (2.8) BS01 HEC ? GO:0005506 ... P0ABE7 29996654
    2838 6dhz:B (2.8) BS01 HEC ? GO:0005506 ... P0ABE7 29996654
    2839 6dhz:C (2.8) BS01 HEC ? GO:0005506 ... P0ABE7 29996654
    2840 6dhz:D (2.8) BS01 HEC ? GO:0005506 ... P0ABE7 29996654
    2841 6duj:A (1.82203) BS01 HEC ? GO:0005515 ... P99999 31557440
    2842 6duj:C (1.82203) BS01 HEC ? GO:0005515 ... P99999 31557440
    2843 6dy4:A (1.9) BS01 HEC ? GO:0005506 ... P0ABE7 30778140
    2844 6dy4:D (1.9) BS03 HEC ? GO:0005506 ... P0ABE7 30778140
    2845 6dy6:A (1.8) BS03 HEC ? GO:0005506 ... P0ABE7 30778140
    2846 6dy6:B (1.8) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2847 6dy8:A (1.9) BS01 HEC ? GO:0005506 ... P0ABE7 30778140
    2848 6dy8:B (1.9) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2849 6dy8:C (1.9) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2850 6dy8:D (1.9) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2851 6dyb:A (2.75) BS01 HEC ? GO:0005506 ... P0ABE7 30778140
    2852 6dyb:C (2.75) BS01 HEC ? GO:0005506 ... P0ABE7 30778140
    2853 6dyc:A (1.33) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2854 6dyc:B (1.33) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2855 6dyd:A (1.724) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2856 6dyd:C (1.724) BS03 HEC ? GO:0005506 ... P0ABE7 30778140
    2857 6dye:A (2.25) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2858 6dye:B (2.25) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2859 6dyf:A (1.1) BS01 HEC ? GO:0005506 ... P0ABE7 30778140
    2860 6dyf:B (1.1) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2861 6dyg:A (1.49) BS01 HEC ? GO:0005506 ... P0ABE7 30778140
    2862 6dyg:B (1.49) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2863 6dyh:A (1.83) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2864 6dyh:D (1.83) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2865 6dyi:B (1.964) BS02 HEC ? GO:0005506 ... P0ABE7 30778140
    2866 6e0x:A (1.974) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2867 6e0x:A (1.974) BS02 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2868 6e0x:B (1.974) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2869 6e0x:B (1.974) BS02 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2870 6e0x:C (1.974) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2871 6e0x:C (1.974) BS02 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2872 6e0x:D (1.974) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2873 6e0x:D (1.974) BS02 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2874 6e0y:A (2.257) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2875 6e0y:A (2.257) BS03 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2876 6e0y:B (2.257) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2877 6e0y:B (2.257) BS02 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2878 6e0y:C (2.257) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2879 6e0y:D (2.257) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2880 6e0y:D (2.257) BS02 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2881 6e0z:A (2.3) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2882 6e0z:B (2.3) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2883 6e0z:B (2.3) BS02 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2884 6e0z:C (2.3) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2885 6e0z:D (2.3) BS01 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2886 6e0z:D (2.3) BS02 HEC ? GO:0046872 ... F9ZFJ0 31015919
    2887 6e17:A (1.97) BS01 HEC ? N/A F9ZFJ0 31015919
    2888 6e17:A (1.97) BS02 HEC ? N/A F9ZFJ0 31015919
    2889 6e17:B (1.97) BS01 HEC ? N/A F9ZFJ0 31015919
    2890 6e17:B (1.97) BS02 HEC ? N/A F9ZFJ0 31015919
    2891 6e17:C (1.97) BS01 HEC ? N/A F9ZFJ0 31015919
    2892 6e17:D (1.97) BS01 HEC ? N/A F9ZFJ0 31015919
    2893 6e1c:A (2.617) BS01 HEC ? GO:0009055 ... A0A2D2CY72 31511324
    2894 6e1c:A (2.617) BS02 HEC ? GO:0009055 ... A0A2D2CY72 31511324
    2895 6e1c:B (2.617) BS01 HEC ? GO:0009055 ... A0A2D2CY72 31511324
    2896 6e1c:B (2.617) BS02 HEC ? GO:0009055 ... A0A2D2CY72 31511324
    2897 6ecj:A (2.7) BS01 HEC ? GO:0005515 ... P99999 33480393
    2898 6ecj:B (2.7) BS01 HEC ? GO:0005515 ... P99999 33480393
    2899 6ecj:C (2.7) BS01 HEC ? GO:0005515 ... P99999 33480393
    2900 6ecj:D (2.7) BS01 HEC ? GO:0005515 ... P99999 33480393
    2901 6ecj:E (2.7) BS01 HEC ? GO:0005515 ... P99999 33480393
    2902 6ecj:F (2.7) BS01 HEC ? GO:0005515 ... P99999 33480393
    2903 6ecj:G (2.7) BS01 HEC ? GO:0005515 ... P99999 33480393
    2904 6ecj:H (2.7) BS01 HEC ? GO:0005515 ... P99999 33480393
    2905 6ee7:A (1.394) BS01 HEC ? GO:0042597 ... Q8EDL6 32406683
    2906 6ee7:A (1.394) BS02 HEC ? GO:0042597 ... Q8EDL6 32406683
    2907 6ee7:A (1.394) BS03 HEC ? GO:0042597 ... Q8EDL6 32406683
    2908 6ee7:A (1.394) BS04 HEC ? GO:0042597 ... Q8EDL6 32406683
    2909 6ef8:A (3.7) BS01 HEC ? GO:0009055 ... Q74A86 30951668
    2910 6ef8:A (3.7) BS02 HEC ? GO:0009055 ... Q74A86 30951668
    2911 6ef8:A (3.7) BS03 HEC ? GO:0009055 ... Q74A86 30951668
    2912 6ef8:A (3.7) BS04 HEC ? GO:0009055 ... Q74A86 30951668
    2913 6ef8:A (3.7) BS05 HEC ? GO:0009055 ... Q74A86 30951668
    2914 6ef8:A (3.7) BS06 HEC ? GO:0009055 ... Q74A86 30951668
    2915 6ef8:A (3.7) BS07 HEC ? GO:0009055 ... Q74A86 30951668
    2916 6ef8:A (3.7) BS08 HEC ? GO:0009055 ... Q74A86 30951668
    2917 6ef8:A (3.7) BS09 HEC ? GO:0009055 ... Q74A86 30951668
    2918 6ef8:B (3.7) BS01 HEC ? GO:0009055 ... Q74A86 30951668
    2919 6ef8:B (3.7) BS02 HEC ? GO:0009055 ... Q74A86 30951668
    2920 6ef8:B (3.7) BS03 HEC ? GO:0009055 ... Q74A86 30951668
    2921 6ef8:B (3.7) BS04 HEC ? GO:0009055 ... Q74A86 30951668
    2922 6ef8:B (3.7) BS05 HEC ? GO:0009055 ... Q74A86 30951668
    2923 6ef8:B (3.7) BS06 HEC ? GO:0009055 ... Q74A86 30951668
    2924 6ef8:B (3.7) BS07 HEC ? GO:0009055 ... Q74A86 30951668
    2925 6ef8:B (3.7) BS08 HEC ? GO:0009055 ... Q74A86 30951668
    2926 6ef8:B (3.7) BS09 HEC ? GO:0009055 ... Q74A86 30951668
    2927 6ef8:C (3.7) BS01 HEC ? GO:0009055 ... Q74A86 30951668
    2928 6ef8:C (3.7) BS02 HEC ? GO:0009055 ... Q74A86 30951668
    2929 6ef8:C (3.7) BS03 HEC ? GO:0009055 ... Q74A86 30951668
    2930 6ef8:C (3.7) BS04 HEC ? GO:0009055 ... Q74A86 30951668
    2931 6ef8:C (3.7) BS05 HEC ? GO:0009055 ... Q74A86 30951668
    2932 6ef8:C (3.7) BS06 HEC ? GO:0009055 ... Q74A86 30951668
    2933 6ef8:C (3.7) BS07 HEC ? GO:0009055 ... Q74A86 30951668
    2934 6ef8:C (3.7) BS08 HEC ? GO:0009055 ... Q74A86 30951668
    2935 6ef8:C (3.7) BS09 HEC ? GO:0009055 ... Q74A86 30951668
    2936 6ef8:D (3.7) BS01 HEC ? GO:0009055 ... Q74A86 30951668
    2937 6ef8:D (3.7) BS02 HEC ? GO:0009055 ... Q74A86 30951668
    2938 6ef8:D (3.7) BS03 HEC ? GO:0009055 ... Q74A86 30951668
    2939 6ef8:D (3.7) BS04 HEC ? GO:0009055 ... Q74A86 30951668
    2940 6ef8:D (3.7) BS05 HEC ? GO:0009055 ... Q74A86 30951668
    2941 6ef8:D (3.7) BS06 HEC ? GO:0009055 ... Q74A86 30951668
    2942 6ef8:D (3.7) BS07 HEC ? GO:0009055 ... Q74A86 30951668
    2943 6ef8:D (3.7) BS08 HEC ? GO:0009055 ... Q74A86 30951668
    2944 6ef8:D (3.7) BS09 HEC ? GO:0009055 ... Q74A86 30951668
    2945 6ef8:E (3.7) BS01 HEC ? GO:0009055 ... Q74A86 30951668
    2946 6ef8:E (3.7) BS02 HEC ? GO:0009055 ... Q74A86 30951668
    2947 6ef8:E (3.7) BS03 HEC ? GO:0009055 ... Q74A86 30951668
    2948 6ef8:E (3.7) BS04 HEC ? GO:0009055 ... Q74A86 30951668
    2949 6ef8:E (3.7) BS05 HEC ? GO:0009055 ... Q74A86 30951668
    2950 6ef8:E (3.7) BS06 HEC ? GO:0009055 ... Q74A86 30951668
    2951 6ef8:E (3.7) BS07 HEC ? GO:0009055 ... Q74A86 30951668
    2952 6ef8:E (3.7) BS08 HEC ? GO:0009055 ... Q74A86 30951668
    2953 6ef8:E (3.7) BS09 HEC ? GO:0009055 ... Q74A86 30951668
    2954 6ef8:F (3.7) BS01 HEC ? GO:0009055 ... Q74A86 30951668
    2955 6ef8:F (3.7) BS02 HEC ? GO:0009055 ... Q74A86 30951668
    2956 6ef8:F (3.7) BS03 HEC ? GO:0009055 ... Q74A86 30951668
    2957 6ef8:F (3.7) BS04 HEC ? GO:0009055 ... Q74A86 30951668
    2958 6ef8:F (3.7) BS05 HEC ? GO:0009055 ... Q74A86 30951668
    2959 6ef8:F (3.7) BS06 HEC ? GO:0009055 ... Q74A86 30951668
    2960 6ef8:F (3.7) BS07 HEC ? GO:0009055 ... Q74A86 30951668
    2961 6ef8:F (3.7) BS08 HEC ? GO:0009055 ... Q74A86 30951668
    2962 6ef8:G (3.7) BS01 HEC ? GO:0009055 ... Q74A86 30951668
    2963 6ef8:G (3.7) BS02 HEC ? GO:0009055 ... Q74A86 30951668
    2964 6ef8:G (3.7) BS03 HEC ? GO:0009055 ... Q74A86 30951668
    2965 6ef8:G (3.7) BS04 HEC ? GO:0009055 ... Q74A86 30951668
    2966 6ef8:G (3.7) BS05 HEC ? GO:0009055 ... Q74A86 30951668
    2967 6ef8:G (3.7) BS06 HEC ? GO:0009055 ... Q74A86 30951668
    2968 6ef8:G (3.7) BS07 HEC ? GO:0009055 ... Q74A86 30951668
    2969 6egy:A (2.7) BS01 HEC ? GO:0005515 ... P00044 30445810
    2970 6egy:B (2.7) BS02 HEC ? GO:0005515 ... P00044 30445810
    2971 6egz:A (2.17) BS01 HEC ? GO:0005515 ... P00044 30445810
    2972 6egz:B (2.17) BS01 HEC ? GO:0005515 ... P00044 30445810
    2973 6f0k:A (3.87) BS01 HEC ? GO:0016020 ... D0MDD4 29712914
    2974 6f0k:A (3.87) BS02 HEC ? GO:0016020 ... D0MDD4 29712914
    2975 6f0k:A (3.87) BS03 HEC ? GO:0016020 ... D0MDD4 29712914
    2976 6f0k:A (3.87) BS04 HEC ? GO:0016020 ... D0MDD4 29712914
    2977 6f0k:A (3.87) BS05 HEC ? GO:0016020 ... D0MDD4 29712914
    2978 6f0k:B (3.87) BS01 HEC ? N/A D0MDD5 29712914
    2979 6f0k:B (3.87) BS02 HEC ? N/A D0MDD5 29712914
    2980 6f0k:C (3.87) BS01 HEC ? GO:0005886 ... D0MDD6 29712914
    2981 6f0k:E (3.87) BS01 HEC ? GO:0009055 ... D0MDD8 29712914
    2982 6f0k:E (3.87) BS02 HEC ? GO:0009055 ... D0MDD8 29712914
    2983 6f1q:A (2.3) BS03 HEC 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    2984 6ff5:A (1.74) BS01 HEC ? GO:0005739 ... P62894 29516298
    2985 6fo0:D (4.1) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 29765610
    2986 6fo0:Q (4.1) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 29765610
    2987 6fo2:D (4.4) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 29765610
    2988 6fo2:Q (4.4) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 29765610
    2989 6fo6:D (4.1) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 29765610
    2990 6fo6:Q (4.1) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 29765610
    2991 6fu3:A (1.8) BS02 HEC 1.11.1.5 GO:0009055 ... Q5F5Z9 N/A
    2992 6fu3:A (1.8) BS03 HEC 1.11.1.5 GO:0009055 ... Q5F5Z9 N/A
    2993 6fu3:B (1.8) BS02 HEC 1.11.1.5 GO:0009055 ... Q5F5Z9 N/A
    2994 6fu3:B (1.8) BS03 HEC 1.11.1.5 GO:0009055 ... Q5F5Z9 N/A
    2995 6gd6:A (1.2) BS01 HEC ? GO:0005515 ... P00044 30109907
    2996 6gd7:A (1.55) BS01 HEC ? GO:0005515 ... P00044 30109907
    2997 6gd8:A (2.5) BS01 HEC ? GO:0005515 ... P00044 30109907
    2998 6gd8:B (2.5) BS02 HEC ? GO:0005515 ... P00044 30109907
    2999 6gd8:C (2.5) BS02 HEC ? GO:0005515 ... P00044 30109907
    3000 6gd8:D (2.5) BS02 HEC ? GO:0005515 ... P00044 30109907
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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