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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a2i:A (-1.00) BS01 HEC ? GO:0009055 ... P00131 9710542
    2 1a2i:A (-1.00) BS02 HEC ? GO:0009055 ... P00131 9710542
    3 1a2i:A (-1.00) BS03 HEC ? GO:0009055 ... P00131 9710542
    4 1a2i:A (-1.00) BS04 HEC ? GO:0009055 ... P00131 9710542
    5 1a2s:A (-1.00) BS01 HEC ? GO:0005506 ... Q09099 9538000
    6 1a56:A (-1.00) BS01 HEC ? GO:0005506 ... P95339 9746537
    7 1a8c:A (-1.00) BS01 HEC ? GO:0005506 ... P95339 9746537
    8 1akk:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 9245419
    9 1ayg:A (-1.00) BS01 HEC ? GO:0005506 ... P15452 9657676
    10 1b7v:A (1.7) BS01 HEC ? GO:0005506 ... P82599 11052663
    11 1bbh:A (1.8) BS01 HEC ? GO:0005506 ... P00154 8230224
    12 1bbh:B (1.8) BS01 HEC ? GO:0005506 ... P00154 8230224
    13 1be3:D (3.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 9651245
    14 1bgy:D (3.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 9651245
    15 1bgy:P (3.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 9651245
    16 1bl9:A (2.9) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9760233
    17 1bl9:B (2.9) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9760233
    18 1c2n:A (-1.00) BS01 HEC ? GO:0009055 ... P00094 9698552
    19 1c2r:A (2.5) BS01 HEC ? GO:0009055 ... P00094 1651396
    20 1c2r:B (2.5) BS01 HEC ? GO:0009055 ... P00094 1651396
    21 1c6s:A (-1.00) BS01 HEC ? GO:0005506 ... P0A3Y0 9427738
    22 1c75:A (0.97) BS01 HEC ? GO:0005506 ... P82599 11052663
    23 1c7m:A (-1.00) BS01 HEC ? GO:0009055 ... P54820 10866825
    24 1cch:A (-1.00) BS01 HEC ? GO:0005506 ... P00101 1327105
    25 1ccr:A (1.5) BS01 HEC ? GO:0005739 ... Q0DI31 6304326
    26 1cgn:A (2.15) BS01 HEC ? GO:0005506 ... P00138 15299707
    27 1cgo:A (1.8) BS01 HEC ? GO:0005506 ... P00138 15299707
    28 1chh:A (1.97) BS01 HEC ? GO:0005515 ... P00044 7819192
    29 1chi:A (2.0) BS01 HEC ? GO:0005515 ... P00044 7819192
    30 1chj:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7819192
    31 1ci3:M (1.9) BS02 HEC ? GO:0005506 ... P95522 10423236
    32 1cie:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    33 1cif:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7711047
    34 1cig:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    35 1cih:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    36 1cno:A (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    37 1cno:B (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    38 1cno:C (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    39 1cno:D (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    40 1cno:E (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    41 1cno:F (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    42 1cno:G (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    43 1cno:G (2.2) BS02 HEC ? GO:0009055 ... P82903 10369779
    44 1cno:H (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    45 1co6:A (1.6) BS01 HEC ? GO:0009055 ... P00083 7674304
    46 1cor:A (-1.00) BS01 HEC ? GO:0005506 ... P00101 1327105
    47 1cot:A (1.7) BS01 HEC ? GO:0009055 ... P00096 8179333
    48 1crc:A (2.08) BS01 HEC ? GO:0005515 ... P00004 8591047
    49 1crc:B (2.08) BS01 HEC ? GO:0005515 ... P00004 8591047
    50 1crg:A (2.0) BS01 HEC ? GO:0005515 ... P00044 8114094
    51 1crh:A (1.9) BS01 HEC ? GO:0005515 ... P00044 8114094
    52 1crj:A (2.05) BS01 HEC ? GO:0005515 ... P00044 8114094
    53 1cry:A (3.0) BS01 HEC ? GO:0009055 ... P00083 15299438
    54 1csu:A (1.81) BS01 HEC ? GO:0005515 ... P00044 7757009
    55 1csv:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7757009
    56 1csw:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7757009
    57 1csx:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7757009
    58 1ctm:A (2.3) BS01 HEC ? GO:0005506 ... P36438 8081747
    59 1cty:A (2.2) BS01 HEC ? GO:0005515 ... P00044 8308895
    60 1ctz:A (1.9) BS01 HEC ? GO:0005515 ... P00044 8308895
    61 1cxa:A (2.2) BS02 HEC ? GO:0009055 ... P0C0X8 15299423
    62 1cxc:A (1.6) BS01 HEC ? GO:0009055 ... P0C0X8 15299423
    63 1cyc:A (2.3) BS01 HEC ? GO:0005739 ... P00025 166072
    64 1cyc:B (2.3) BS01 HEC ? GO:0005739 ... P00025 166072
    65 1cyi:A (1.9) BS01 HEC ? GO:0005506 ... P08197 7623381
    66 1cyj:A (1.9) BS01 HEC ? GO:0005506 ... P08197 7623381
    67 1d4c:A (2.9) BS01 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    68 1d4c:A (2.9) BS02 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    69 1d4c:A (2.9) BS03 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    70 1d4c:A (2.9) BS04 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    71 1d4c:B (2.9) BS01 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    72 1d4c:B (2.9) BS02 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    73 1d4c:B (2.9) BS03 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    74 1d4c:B (2.9) BS04 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    75 1d4c:B (2.9) BS06 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    76 1d4c:B (2.9) BS07 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    77 1d4c:C (2.9) BS01 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    78 1d4c:C (2.9) BS02 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    79 1d4c:C (2.9) BS03 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    80 1d4c:C (2.9) BS04 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    81 1d4c:C (2.9) BS05 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    82 1d4c:D (2.9) BS01 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    83 1d4c:D (2.9) BS02 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    84 1d4c:D (2.9) BS03 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    85 1d4c:D (2.9) BS04 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    86 1d4d:A (2.5) BS01 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    87 1d4d:A (2.5) BS02 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    88 1d4d:A (2.5) BS03 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    89 1d4d:A (2.5) BS04 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    90 1d4e:A (2.8) BS01 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    91 1d4e:A (2.8) BS02 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    92 1d4e:A (2.8) BS03 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    93 1d4e:A (2.8) BS04 HEC 1.3.2.4 GO:0010181 ... P83223 10581551
    94 1dii:C (2.5) BS01 HEC 1.17.99.1 GO:0009055 ... P09787 10623531
    95 1dii:D (2.5) BS01 HEC 1.17.99.1 GO:0009055 ... P09787 10623531
    96 1diq:C (2.75) BS01 HEC 1.17.99.1 GO:0009055 ... P09787 10623531
    97 1diq:D (2.75) BS01 HEC 1.17.99.1 GO:0009055 ... P09787 10623531
    98 1dt1:A (1.8) BS01 HEC ? GO:0009055 ... Q5SME3 11152119
    99 1duw:A (1.89) BS01 HEC ? GO:0009055 ... Q9XCU0 11170457
    100 1duw:A (1.89) BS02 HEC ? GO:0009055 ... Q9XCU0 11170457
    101 1duw:A (1.89) BS03 HEC ? GO:0009055 ... Q9XCU0 11170457
    102 1duw:A (1.89) BS04 HEC ? GO:0009055 ... Q9XCU0 11170457
    103 1duw:A (1.89) BS05 HEC ? GO:0009055 ... Q9XCU0 11170457
    104 1duw:A (1.89) BS06 HEC ? GO:0009055 ... Q9XCU0 11170457
    105 1duw:A (1.89) BS07 HEC ? GO:0009055 ... Q9XCU0 11170457
    106 1duw:A (1.89) BS08 HEC ? GO:0009055 ... Q9XCU0 11170457
    107 1duw:A (1.89) BS09 HEC ? GO:0009055 ... Q9XCU0 11170457
    108 1dvh:A (-1.00) BS01 HEC ? GO:0009055 ... P04032 7844834
    109 1dw0:A (1.82) BS01 HEC ? GO:0009055 ... P81238 10821858
    110 1dw0:B (1.82) BS01 HEC ? GO:0009055 ... P81238 10821858
    111 1dw0:C (1.82) BS01 HEC ? GO:0009055 ... P81238 10821858
    112 1dw1:A (1.9) BS02 HEC ? GO:0009055 ... P81238 10821858
    113 1dw1:B (1.9) BS02 HEC ? GO:0009055 ... P81238 10821858
    114 1dw1:C (1.9) BS02 HEC ? GO:0009055 ... P81238 10821858
    115 1dw3:A (2.1) BS01 HEC ? GO:0009055 ... P81238 10821858
    116 1dw3:B (2.1) BS01 HEC ? GO:0009055 ... P81238 10821858
    117 1dw3:C (2.1) BS01 HEC ? GO:0009055 ... P81238 10821858
    118 1dwl:B (-1.00) BS01 HEC ? GO:0042597 ... P04032 10704202
    119 1dxr:C (2.0) BS01 HEC ? GO:0005506 ... P07173 11005826
    120 1dxr:C (2.0) BS02 HEC ? GO:0005506 ... P07173 11005826
    121 1dxr:C (2.0) BS03 HEC ? GO:0005506 ... P07173 11005826
    122 1dxr:C (2.0) BS04 HEC ? GO:0005506 ... P07173 11005826
    123 1dy7:B (1.6) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10998233
    124 1e08:E (-1.00) BS01 HEC ? GO:0042597 ... P04032 10748163
    125 1e29:A (1.21) BS01 HEC ? GO:0005506 ... Q55013 11315568
    126 1e2r:A (1.59) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10827177
    127 1e2r:B (1.59) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10827177
    128 1e2v:A (1.85) BS01 HEC ? GO:0005506 ... P23577 10924110
    129 1e2v:B (1.85) BS01 HEC ? GO:0005506 ... P23577 10924110
    130 1e2v:C (1.85) BS01 HEC ? GO:0005506 ... P23577 10924110
    131 1e2w:A (1.6) BS01 HEC ? GO:0005506 ... P23577 10924110
    132 1e2w:B (1.6) BS01 HEC ? GO:0005506 ... P23577 10924110
    133 1e2z:A (2.5) BS01 HEC ? GO:0005506 ... P23577 10924110
    134 1e2z:B (2.5) BS01 HEC ? GO:0005506 ... P23577 10924110
    135 1e2z:C (2.5) BS01 HEC ? GO:0005506 ... P23577 10924110
    136 1e39:A (1.8) BS01 HEC 1.3.2.4 GO:0008202 ... P0C278 10978153
    137 1e39:A (1.8) BS02 HEC 1.3.2.4 GO:0008202 ... P0C278 10978153
    138 1e39:A (1.8) BS03 HEC 1.3.2.4 GO:0008202 ... P0C278 10978153
    139 1e39:A (1.8) BS04 HEC 1.3.2.4 GO:0008202 ... P0C278 10978153
    140 1e83:A (2.05) BS01 HEC ? GO:0005506 ... P00138 11060017
    141 1e84:A (1.9) BS01 HEC ? GO:0005506 ... P00138 11060017
    142 1e85:A (1.35) BS01 HEC ? GO:0005506 ... P00138 11060017
    143 1e86:A (1.95) BS01 HEC ? GO:0005506 ... P00138 11060017
    144 1e8e:A (-1.00) BS01 HEC ? GO:0003674 ... Q9RQB9 11327772
    145 1eb7:A (2.4) BS01 HEC 1.11.1.5 GO:0004130 ... P14532 8591033
    146 1eb7:A (2.4) BS02 HEC 1.11.1.5 GO:0004130 ... P14532 8591033
    147 1ehj:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 10561607
    148 1ehj:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 10561607
    149 1ehj:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 10561607
    150 1ewh:A (2.35) BS01 HEC ? GO:0005506 ... P23577 10924110
    151 1ewh:B (2.35) BS01 HEC ? GO:0005506 ... P23577 10924110
    152 1ewh:C (2.35) BS01 HEC ? GO:0005506 ... P23577 10924110
    153 1f1c:A (2.3) BS01 HEC ? GO:0005506 ... P82603 11478889
    154 1f1c:B (2.3) BS01 HEC ? GO:0005506 ... P82603 11478889
    155 1f1f:A (2.7) BS01 HEC ? GO:0005506 ... P00118 11478889
    156 1f22:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 10561607
    157 1f22:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 10561607
    158 1f22:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 10561607
    159 1fcd:A (2.53) BS02 HEC 1.8.2.3 GO:0016491 ... Q06530 7939681
    160 1fcd:B (2.53) BS02 HEC 1.8.2.3 GO:0016491 ... Q06530 7939681
    161 1fcd:C (2.53) BS01 HEC ? GO:0005506 ... Q06529 7939681
    162 1fcd:C (2.53) BS02 HEC ? GO:0005506 ... Q06529 7939681
    163 1fcd:D (2.53) BS01 HEC ? GO:0005506 ... Q06529 7939681
    164 1fcd:D (2.53) BS02 HEC ? GO:0005506 ... Q06529 7939681
    165 1fgj:A (2.8) BS04 HEC 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    166 1fgj:B (2.8) BS04 HEC 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    167 1fi3:A (-1.00) BS01 HEC ? GO:0005506 ... P00101 11371465
    168 1fi7:A (-1.00) BS02 HEC ? GO:0005515 ... P00004 11472026
    169 1fi9:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 11472026
    170 1fj0:A (1.7) BS01 HEC ? GO:0009055 ... P00091 11742117
    171 1fj0:B (1.7) BS01 HEC ? GO:0009055 ... P00091 11742117
    172 1fj0:C (1.7) BS01 HEC ? GO:0009055 ... P00091 11742117
    173 1fj0:D (1.7) BS01 HEC ? GO:0009055 ... P00091 11742117
    174 1foc:A (3.0) BS01 HEC ? GO:0009055 ... Q5SME3 11069913
    175 1foc:B (3.0) BS01 HEC ? GO:0009055 ... Q5SME3 11069913
    176 1fs7:A (1.6) BS02 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    177 1fs7:A (1.6) BS03 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    178 1fs7:A (1.6) BS04 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    179 1fs7:A (1.6) BS05 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    180 1fs7:A (1.6) BS06 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    181 1fs8:A (1.6) BS04 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    182 1fs8:A (1.6) BS05 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    183 1fs8:A (1.6) BS06 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    184 1fs8:A (1.6) BS07 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    185 1fs8:A (1.6) BS08 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    186 1fs9:A (2.0) BS03 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    187 1fs9:A (2.0) BS04 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    188 1fs9:A (2.0) BS05 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    189 1fs9:A (2.0) BS06 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    190 1fs9:A (2.0) BS07 HEC 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    191 1ft6:A (1.8) BS01 HEC ? GO:0042597 ... Q57142 11372197
    192 1ft6:A (1.8) BS02 HEC ? GO:0042597 ... Q57142 11372197
    193 1ft6:A (1.8) BS03 HEC ? GO:0042597 ... Q57142 11372197
    194 1ft6:A (1.8) BS04 HEC ? GO:0042597 ... Q57142 11372197
    195 1gdv:A (1.57) BS01 HEC ? GO:0005506 ... Q8WKJ8 11092924
    196 1giw:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 10499099
    197 1gjq:A (2.7) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    198 1gjq:B (2.7) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    199 1gm4:A (2.05) BS01 HEC ? GO:0009055 ... Q9L915 11551953
    200 1gm4:A (2.05) BS02 HEC ? GO:0009055 ... Q9L915 11551953
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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