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BioLiP
Download all results in tab-seperated text for 94 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1qq3:A (-1.00) BS01 HEB ? GO:0005506 ... P0ABE7 10684632
    2 2acz:C (3.1) BS01 HEB ? GO:0005886 ... P69054 16407191
    3 2acz:D (3.1) BS01 HEB ? GO:0005886 ... P0AC44 16407191
    4 2ksc:A (-1.00) BS01 HEB ? GO:0005344 ... Q8RT58 20669934
    5 3wnu:A (2.2) BS01 HEB 1.11.1.21 GO:0004096 ... Q31MN3 24598912
    6 3x16:A (2.65) BS01 HEB 1.11.1.21 GO:0004096 ... Q31MN3 25479089
    7 4j20:A (1.3) BS01 HEB ? GO:0005506 ... Q8KG93 24052268
    8 4j20:B (1.3) BS01 HEB ? GO:0005506 ... Q8KG93 24052268
    9 4l2m:A (2.25) BS01 HEB ? GO:0005344 ... Q8RT58 23999883
    10 4l2m:B (2.25) BS01 HEB ? GO:0005344 ... Q8RT58 23999883
    11 4l36:A (2.104) BS01 HEB ? GO:0004497 ... C9ZDC6 24282603
    12 4l36:B (2.104) BS01 HEB ? GO:0004497 ... C9ZDC6 24282603
    13 4max:A (1.444) BS01 HEB ? GO:0005344 ... Q8RT58 23999883
    14 4max:B (1.444) BS01 HEB ? GO:0005344 ... Q8RT58 23999883
    15 4max:B (1.444) BS02 HEB ? GO:0005344 ... Q8RT58 23999883
    16 4max:C (1.444) BS01 HEB ? GO:0005344 ... Q8RT58 23999883
    17 4pae:A (3.206) BS01 HEB 1.11.1.21 GO:0004096 ... Q31MN3 25479089
    18 4y7s:A (2.0) BS01 HEB ? N/A Q5A0X8 27617569
    19 4y7s:B (2.0) BS01 HEB ? N/A Q5A0X8 27617569
    20 4y7s:C (2.0) BS01 HEB ? N/A Q5A0X8 27617569
    21 5doq:A (3.05) BS01 HEB ? GO:0005886 ... A4IKP6 27126043
    22 5doq:A (3.05) BS02 HEB ? GO:0005886 ... A4IKP6 27126043
    23 5ir6:A (3.8) BS01 HEB ? GO:0005886 ... Q9Z9N1 27126043
    24 5ir6:A (3.8) BS02 HEB ? GO:0005886 ... Q9Z9N1 27126043
    25 6a6q:A (1.67) BS01 HEB 1.11.1.14 GO:0000302 ... P06181 30555531
    26 6rko:A (2.68) BS04 HEB 7.1.1.7 GO:0005515 ... P0ABJ9 31604309
    27 6rko:A (2.68) BS05 HEB 7.1.1.7 GO:0005515 ... P0ABJ9 31604309
    28 6rx4:A (3.3) BS02 HEB 7.1.1.7 GO:0005515 ... P0ABJ9 31723136
    29 6rx4:A (3.3) BS03 HEB 7.1.1.7 GO:0005515 ... P0ABJ9 31723136
    30 6wxv:A (3.3) BS02 HEB 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    31 6wxv:A (3.3) BS03 HEB 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    32 7d5i:A (2.79) BS01 HEB 1.10.3.- GO:0005886 ... A0QXA8 34330928
    33 7d5i:A (2.79) BS02 HEB 1.10.3.- GO:0005886 ... A0QXA8 34330928
    34 7nkz:A (2.5) BS04 HEB ? GO:0005886 ... L7N662 34475399
    35 7nkz:A (2.5) BS05 HEB ? GO:0005886 ... L7N662 34475399
    36 7ose:A (3.0) BS02 HEB 7.1.1.3 GO:0005886 ... P26459 34764272
    37 7ose:A (3.0) BS03 HEB 7.1.1.3 GO:0005886 ... P26459 34764272
    38 7ose:D (3.0) BS02 HEB 7.1.1.3 GO:0005886 ... P26459 34764272
    39 7ose:D (3.0) BS03 HEB 7.1.1.3 GO:0005886 ... P26459 34764272
    40 7oy2:C (2.06) BS02 HEB 7.1.1.3 GO:0005886 ... P26459 34873041
    41 7oy2:C (2.06) BS03 HEB 7.1.1.3 GO:0005886 ... P26459 34873041
    42 7s9y:A (3.56) BS01 HEB ? GO:0005886 ... Q7VHG9 34931065
    43 7s9y:A (3.56) BS02 HEB ? GO:0005886 ... Q7VHG9 34931065
    44 7s9z:A (4.14) BS01 HEB ? GO:0005886 ... Q7VHG9 34931065
    45 7zdb:C (3.35) BS01 HEB 7.4.2.- GO:0005524 ... P23886 37095238
    46 7zdb:D (3.35) BS01 HEB 7.4.2.- GO:0005524 ... P29018 37095238
    47 7zdc:C (3.13) BS01 HEB 7.4.2.- GO:0005524 ... P23886 37095238
    48 7zdc:D (3.13) BS01 HEB 7.4.2.- GO:0005524 ... P29018 37095238
    49 7zdg:C (2.77) BS01 HEB 7.4.2.- GO:0005524 ... P23886 37095238
    50 7zdg:D (2.77) BS01 HEB 7.4.2.- GO:0005524 ... P29018 37095238
    51 7zdl:C (3.35) BS01 HEB 7.4.2.- GO:0005524 ... P23886 37095238
    52 7zdl:D (3.35) BS01 HEB 7.4.2.- GO:0005524 ... P29018 37095238
    53 7zdw:C (3.35) BS01 HEB 7.4.2.- GO:0005524 ... P23886 37095238
    54 7zdw:D (3.35) BS01 HEB 7.4.2.- GO:0005524 ... P29018 37095238
    55 7zec:C (3.05) BS01 HEB 7.4.2.- GO:0005524 ... P23886 37095238
    56 7zec:D (3.05) BS01 HEB 7.4.2.- GO:0005524 ... P29018 37095238
    57 8abr:A (2.1) BS01 HEB 1.14.-.- GO:0004497 ... D5DF88 37453052
    58 8abs:A (1.75) BS01 HEB 1.14.-.- GO:0004497 ... D5DF88 37453052
    59 8b4o:A (2.0) BS02 HEB ? GO:0005886 ... Q9KWL8 N/A
    60 8b4o:A (2.0) BS03 HEB ? GO:0005886 ... Q9KWL8 N/A
    61 8c9i:A (2.05) BS01 HEB 1.14.-.- GO:0004497 ... P9WPL7 N/A
    62 8fm6:A (2.85) BS01 HEB ? GO:0046872 ... P73129 38609367
    63 8fm6:B (2.85) BS01 HEB ? GO:0046872 ... P73129 38609367
    64 8gbk:A (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    65 8gbk:B (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    66 8gbk:C (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    67 8gbk:D (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    68 8gbk:E (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    69 8gbk:F (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    70 8gbk:G (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    71 8gbk:H (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    72 8glo:A (1.937) BS01 HEB ? N/A A0A369Z2V2 38814789
    73 8gm3:A (1.727) BS01 HEB ? GO:0046872 ... A0A3A1PTD6 38814789
    74 8gm3:B (1.727) BS01 HEB ? GO:0046872 ... A0A3A1PTD6 38814789
    75 8gmm:A (1.8) BS01 HEB ? GO:0046872 ... B8L5W6 38814789
    76 8gmm:B (1.8) BS01 HEB ? GO:0046872 ... B8L5W6 38814789
    77 8ogi:A (1.547) BS01 HEB 1.11.1.7 GO:0004601 ... P11678 38229400
    78 8ogi:B (1.547) BS01 HEB 1.11.1.7 GO:0004601 ... P11678 38229400
    79 8u7y:A (4.06) BS03 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    80 8u7y:A (4.06) BS04 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    81 8u7y:B (4.06) BS03 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    82 8u7y:B (4.06) BS04 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    83 8u85:A (3.2) BS01 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    84 8u85:A (3.2) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    85 8u85:C (3.2) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    86 8u85:C (3.2) BS03 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    87 8u86:A (3.3) BS01 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    88 8u86:A (3.3) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    89 8u86:C (3.3) BS01 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    90 8u86:C (3.3) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    91 8u87:A (3.86) BS01 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    92 8u87:A (3.86) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    93 8u87:C (3.86) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    94 8u87:C (3.86) BS03 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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