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BioLiP
Download all results in tab-seperated text for 666 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 8h8r:N (1.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    602 8h8r:O (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    603 8h8s:A (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    604 8h8s:A (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    605 8h8s:B (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    606 8h8s:N (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    607 8h8s:N (1.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    608 8h8s:O (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    609 8hcr:F (-1.00) BS01 HEA 7.1.1.9 GO:0004129 ... P9WP71 37158740
    610 8hcr:F (-1.00) BS02 HEA 7.1.1.9 GO:0004129 ... P9WP71 37158740
    611 8hcr:R (-1.00) BS01 HEA 7.1.1.9 GO:0004129 ... P9WP71 37158740
    612 8hcr:R (-1.00) BS02 HEA 7.1.1.9 GO:0004129 ... P9WP71 37158740
    613 8ijn:A (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    614 8ijn:A (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    615 8ijn:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    616 8ijn:N (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    617 8ijn:N (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    618 8iuf:C1 (2.81) BS01 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    619 8iuf:C1 (2.81) BS02 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    620 8iuj:C1 (3.06) BS01 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    621 8iuj:C1 (3.06) BS02 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    622 8iuj:c1 (3.06) BS01 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    623 8iuj:c1 (3.06) BS02 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    624 8ovc:L (2.8) BS01 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    625 8ovc:L (2.8) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    626 8ovc:R (2.8) BS01 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    627 8ovc:R (2.8) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    628 8ovd:L (2.3) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    629 8ovd:L (2.3) BS03 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    630 8ovd:R (2.3) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    631 8ovd:R (2.3) BS03 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    632 8pw5:a (3.6) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    633 8pw5:a (3.6) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    634 8pw5:b (3.6) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    635 8pw5:n (3.6) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    636 8pw5:n (3.6) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    637 8pw5:o (3.6) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    638 8pw6:n (3.3) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    639 8pw6:n (3.3) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    640 8pw6:o (3.3) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    641 8pw7:n (3.5) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    642 8pw7:n (3.5) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    643 8pw7:o (3.5) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    644 8q1b:a (3.4) BS01 HEA 7.1.1.9 GO:0004129 ... P07657 37939086
    645 8q1b:a (3.4) BS02 HEA 7.1.1.9 GO:0004129 ... P07657 37939086
    646 8ugh:4A (2.1) BS01 HEA N/A GO:0004129 ... O79876 38811722
    647 8ugh:4A (2.1) BS02 HEA N/A GO:0004129 ... O79876 38811722
    648 8ugi:4A (2.1) BS01 HEA N/A GO:0004129 ... O79876 38811722
    649 8ugi:4A (2.1) BS02 HEA N/A GO:0004129 ... O79876 38811722
    650 8ugi:4B (2.1) BS01 HEA N/A GO:0004129 ... P50667 38811722
    651 8ugj:4A (2.3) BS01 HEA N/A GO:0004129 ... O79876 38811722
    652 8ugj:4A (2.3) BS02 HEA N/A GO:0004129 ... O79876 38811722
    653 8ugj:4B (2.3) BS01 HEA N/A GO:0004129 ... Q69GF7 38811722
    654 8ugj:8A (2.3) BS01 HEA N/A GO:0004129 ... O79876 38811722
    655 8ugj:8A (2.3) BS02 HEA N/A GO:0004129 ... O79876 38811722
    656 8ugl:4A (3.0) BS01 HEA N/A GO:0004129 ... O79876 38811722
    657 8ugl:4A (3.0) BS02 HEA N/A GO:0004129 ... O79876 38811722
    658 8ugl:4B (3.0) BS01 HEA N/A GO:0004129 ... Q69GF7 38811722
    659 8ugn:4A (2.7) BS01 HEA N/A GO:0004129 ... O79876 38811722
    660 8ugn:4A (2.7) BS02 HEA N/A GO:0004129 ... O79876 38811722
    661 8ugn:8A (2.7) BS01 HEA N/A GO:0004129 ... O79876 38811722
    662 8ugn:8A (2.7) BS02 HEA N/A GO:0004129 ... O79876 38811722
    663 8ugr:4A (6.5) BS01 HEA N/A GO:0004129 ... O79876 38811722
    664 8ugr:4A (6.5) BS02 HEA N/A GO:0004129 ... O79876 38811722
    665 8ugr:8A (6.5) BS01 HEA N/A GO:0004129 ... O79876 38811722
    666 8ugr:8A (6.5) BS02 HEA N/A GO:0004129 ... O79876 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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