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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3p9p:A (1.5) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    2 3p9p:B (1.5) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    3 3p9p:C (1.5) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    4 3p9p:D (1.5) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    5 3p9q:A (1.48) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    6 3p9q:B (1.48) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    7 3p9q:C (1.48) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    8 3p9q:D (1.48) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    9 3p9s:A (1.9) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    10 3p9s:B (1.9) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    11 3p9s:C (1.9) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    12 3p9s:D (1.9) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    13 3pq2:A (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    14 3pq2:B (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    15 3pq2:C (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    16 3pq2:D (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    17 3pq3:A (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    18 3pq3:B (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    19 3pq3:C (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    20 3pq3:D (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    21 3pq4:A (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    22 3pq4:B (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    23 3pq4:C (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    24 3pq4:D (1.79) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    25 3pq5:A (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    26 3pq5:B (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    27 3pq5:C (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    28 3pq5:D (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    29 3pq6:A (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    30 3pq6:B (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    31 3pq6:C (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    32 3pq6:D (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    33 3pq7:A (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    34 3pq7:B (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    35 3pq7:C (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    36 3pq7:D (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    37 3pq8:A (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    38 3pq8:B (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    39 3pq8:C (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    40 3pq8:D (1.8) BS02 HDE 1.11.1.6 GO:0004096 ... P21179 21332158
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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