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BioLiP
Download all results in tab-seperated text for 132 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dcp:A (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    2 1dcp:B (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    3 1dcp:C (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    4 1dcp:D (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    5 1dcp:E (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    6 1dcp:F (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7 1dcp:G (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8 1dcp:H (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    9 1dmw:A (2.0) BS02 HBI 1.14.16.1 GO:0004497 ... P00439 10694386
    10 1dr1:A (2.2) BS02 HBI 1.5.1.3 GO:0003723 ... P00378 1510919
    11 1dr3:A (2.3) BS02 HBI 1.5.1.3 GO:0003723 ... P00378 8334118
    12 1dr4:A (2.4) BS02 HBI 1.5.1.3 GO:0003723 ... P00378 N/A
    13 1dr6:A (2.4) BS02 HBI 1.5.1.3 GO:0003723 ... P00378 N/A
    14 1e92:A (2.2) BS02 HBI 1.5.1.33 GO:0004155 ... Q01782 11373620
    15 1e92:B (2.2) BS02 HBI 1.5.1.33 GO:0004155 ... Q01782 11373620
    16 1e92:C (2.2) BS02 HBI 1.5.1.33 GO:0004155 ... Q01782 11373620
    17 1e92:D (2.2) BS02 HBI 1.5.1.33 GO:0004155 ... Q01782 11373620
    18 1jwk:A (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    19 1jwk:B (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    20 1lrm:A (2.1) BS02 HBI 1.14.16.1 GO:0004497 ... P00439 N/A
    21 1ltz:A (1.4) BS02 HBI 1.14.16.1 GO:0004497 ... P30967 12096915
    22 1mlw:A (1.71) BS02 HBI 1.14.16.4 GO:0004497 ... P17752 12379098
    23 1wpl:A (2.8) BS02 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    24 1wpl:A (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    25 1wpl:B (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    26 1wpl:B (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    27 1wpl:C (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    28 1wpl:C (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    29 1wpl:D (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    30 1wpl:D (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    31 1wpl:E (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    32 1wpl:E (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    33 1wpl:F (2.8) BS02 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    34 1wpl:F (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    35 1wpl:G (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    36 1wpl:G (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    37 1wpl:H (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38 1wpl:H (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    39 1wpl:I (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    40 1wpl:I (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    41 1wpl:J (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    42 1wpl:J (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    43 2bf7:A (2.4) BS02 HBI 1.5.1.33 GO:0004155 ... Q01782 16055151
    44 2bf7:B (2.4) BS02 HBI 1.5.1.33 GO:0004155 ... Q01782 16055151
    45 2bf7:C (2.4) BS02 HBI 1.5.1.33 GO:0004155 ... Q01782 16055151
    46 2bf7:D (2.4) BS02 HBI 1.5.1.33 GO:0004155 ... Q01782 16055151
    47 2bhj:A (3.2) BS03 HBI 1.14.13.39 GO:0004517 ... P29477 15781384
    48 2fc1:A (2.0) BS03 HBI 1.14.14.47 GO:0004517 ... O34453 16489746
    49 2fc2:B (2.2) BS03 HBI 1.14.14.47 GO:0004517 ... O34453 16489746
    50 2g6i:A (1.9) BS03 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    51 2g6i:A (1.9) BS05 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    52 2g6i:B (1.9) BS02 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    53 2g6i:B (1.9) BS04 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    54 2g6l:A (2.05) BS03 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    55 2g6l:A (2.05) BS05 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    56 2g6l:B (2.05) BS02 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    57 2g6l:B (2.05) BS04 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    58 2g6n:A (1.9) BS03 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    59 2g6n:A (1.9) BS05 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    60 2g6n:B (1.9) BS02 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    61 2g6n:B (1.9) BS04 HBI 1.14.13.39 GO:0004517 ... P29476 16804678
    62 2toh:A (2.3) BS02 HBI 1.14.16.2 GO:0004497 ... P04177 9753429 MOAD: Ki=70uM
    PDBbind: -logKd/Ki=4.15, Ki=70uM
    63 3e7t:A (2.6) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 18849972
    64 3e7t:B (2.6) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 18849972
    65 5jk5:A (2.071) BS03 HBI 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    66 5jk5:B (2.071) BS03 HBI 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    67 5jk8:A (2.394) BS02 HBI 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    68 5jk8:B (2.394) BS03 HBI 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    69 5zer:A (2.39) BS01 HBI ? GO:0000166 ... Q31LX1 N/A
    70 5zer:B (2.39) BS01 HBI ? GO:0000166 ... Q31LX1 N/A
    71 5zfk:A (1.75) BS02 HBI ? GO:0000166 ... Q31LX1 N/A
    72 5zfk:B (1.75) BS01 HBI ? GO:0000166 ... Q31LX1 N/A
    73 6z85:A (2.9) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    74 6z85:A (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    75 6z85:B (2.9) BS01 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    76 6z85:B (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    77 6z85:C (2.9) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    78 6z85:C (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    79 6z85:D (2.9) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    80 6z85:D (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    81 6z85:E (2.9) BS01 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    82 6z85:E (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    83 6z85:F (2.9) BS01 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    84 6z85:F (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    85 6z85:G (2.9) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    86 6z85:G (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    87 6z85:H (2.9) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    88 6z85:H (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    89 6z85:I (2.9) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    90 6z85:I (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    91 6z85:J (2.9) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    92 6z85:J (2.9) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33229582
    93 7alq:A (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    94 7alq:A (2.205) BS04 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    95 7alq:B (2.205) BS01 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    96 7alq:B (2.205) BS04 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    97 7alq:C (2.205) BS01 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    98 7alq:C (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    99 7alq:D (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    100 7alq:D (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    101 7alq:E (2.205) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    102 7alq:E (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    103 7alq:F (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    104 7alq:F (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    105 7alq:G (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    106 7alq:G (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    107 7alq:H (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    108 7alq:H (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    109 7alq:I (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    110 7alq:I (2.205) BS04 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    111 7alq:J (2.205) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    112 7alq:J (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    113 7alq:K (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    114 7alq:K (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    115 7alq:L (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    116 7alq:L (2.205) BS04 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    117 7alq:M (2.205) BS01 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    118 7alq:M (2.205) BS04 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    119 7alq:N (2.205) BS01 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    120 7alq:N (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    121 7alq:O (2.205) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    122 7alq:O (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    123 7alq:P (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    124 7alq:P (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    125 7alq:Q (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    126 7alq:Q (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    127 7alq:R (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    128 7alq:R (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    129 7alq:S (2.205) BS03 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    130 7alq:S (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    131 7alq:T (2.205) BS02 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    132 7alq:T (2.205) BS05 HBI 3.5.4.16 GO:0003934 ... P30793 33387654
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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