Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 6 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 6srb:A (1.65) BS01 GSH ? GO:0005737 ... A0A1M2V359 33450403
    1002 6srb:B (1.65) BS01 GSH ? GO:0005737 ... A0A1M2V359 33450403
    1003 6ssu:A (2.499) BS01 GSH 1.11.1.-
    2.5.1.18
    4.4.1.20    		 GO:0004364 ... Q99735 33741927
    1004 6ssu:A (2.499) BS02 GSH 1.11.1.-
    2.5.1.18
    4.4.1.20    		 GO:0004364 ... Q99735 33741927
    1005 6ssu:B (2.499) BS01 GSH 1.11.1.-
    2.5.1.18
    4.4.1.20    		 GO:0004364 ... Q99735 33741927
    1006 6ssu:C (2.499) BS01 GSH 1.11.1.-
    2.5.1.18
    4.4.1.20    		 GO:0004364 ... Q99735 33741927
    1007 6t2t:A (1.3) BS01 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 31845319
    1008 6t48:A (2.17) BS02 GSH 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 N/A Q2LKZ0 31909201
    1009 6t48:C (2.17) BS01 GSH 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... Q2LKZ0 31909201
    1010 6t4c:A (1.8) BS01 GSH 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 N/A Q2LKZ0 31909201
    1011 6t4c:C (1.8) BS01 GSH 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... Q2LKZ0 31909201
    1012 6t7p:A (1.416) BS01 GSH 3.4.21.34 GO:0004252 ... P03952 32551603
    1013 6tjl:A (1.87) BS03 GSH 2.3.2.15 GO:0010038 ... Q8YY76 N/A
    1014 6tjl:B (1.87) BS03 GSH 2.3.2.15 GO:0010038 ... Q8YY76 N/A
    1015 6w58:A (2.395) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33059303
    1016 6w8h:A (1.97) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33059303
    1017 6w8h:C (1.97) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33059303
    1018 6xpc:B (2.26) BS01 GSH 2.3.2.2
    3.4.19.13
    3.4.19.14    		 GO:0006751 ... P19440 33187988
    1019 6y1e:A (1.402) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    1020 6y1e:B (1.402) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    1021 6y1e:C (1.402) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    1022 6y1e:D (1.402) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    1023 6zb6:D (1.9) BS01 GSH 2.5.1.18 GO:0004364 ... M5BPX4 33257232
    1024 6zj9:A (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1025 6zjc:A (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1026 6zjc:A (2.2) BS02 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1027 6zjc:B (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1028 6zjc:B (2.2) BS03 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1029 6zjc:C (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1030 6zjc:C (2.2) BS02 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1031 6zjc:D (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1032 6zjc:D (2.2) BS03 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    1033 6ztc:A (1.84) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33991628
    1034 6ztc:B (1.84) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33991628
    1035 7bia:A (1.73) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 35344726
    1036 7bia:B (1.73) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 35344726
    1037 7day:A (1.48) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1038 7day:B (1.48) BS03 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1039 7daz:A (1.64) BS01 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1040 7daz:B (1.64) BS01 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1041 7db1:A (1.83) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1042 7db1:B (1.83) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1043 7db2:A (1.4) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1044 7db2:B (1.4) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1045 7db3:A (1.7) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1046 7db3:B (1.7) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1047 7db4:A (1.54) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1048 7db4:B (1.54) BS02 GSH 2.5.1.18 GO:0003824 ... Q7JYX0 N/A
    1049 7dkp:A (1.45) BS01 GSH ? GO:0005829 ... P0AC59 N/A
    1050 7dkp:B (1.45) BS01 GSH ? GO:0005829 ... P0AC59 N/A
    1051 7dkp:C (1.45) BS01 GSH ? GO:0005829 ... P0AC59 N/A
    1052 7dkp:D (1.45) BS01 GSH ? GO:0005829 ... P0AC59 N/A
    1053 7dnz:A (3.6) BS01 GSH 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    1054 7dnz:A (3.6) BS02 GSH 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    1055 7dnz:B (3.6) BS02 GSH 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    1056 7dnz:B (3.6) BS03 GSH 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    1057 7dw1:A (2.27) BS01 GSH 2.5.1.18 GO:0004364 ... A0A4Y5R032 N/A
    1058 7dw1:B (2.27) BS01 GSH 2.5.1.18 GO:0004364 ... A0A4Y5R032 N/A
    1059 7dw4:A (1.57) BS01 GSH 2.5.1.18 GO:0004364 ... A0A4Y5R032 N/A
    1060 7dwe:A (1.77) BS01 GSH 2.5.1.18 GO:0004364 ... A0A4Y5R087 N/A
    1061 7dwg:A (1.67) BS01 GSH 2.5.1.18 GO:0004364 ... A0A4Y5R087 N/A
    1062 7ebt:A (1.51) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1063 7ebt:B (1.51) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1064 7ebt:C (1.51) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1065 7ebt:D (1.51) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1066 7ebu:A (1.95) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1067 7ebu:B (1.95) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1068 7ebu:C (1.95) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1069 7ebu:D (1.95) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1070 7ebv:A (1.5) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1071 7ebv:B (1.5) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1072 7ebv:C (1.5) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1073 7ebv:D (1.5) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1074 7ebw:A (1.94) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1075 7ebw:B (1.94) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1076 7ebw:C (1.94) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1077 7ebw:D (1.94) BS01 GSH 2.5.1.18 N/A A0A1S4FIB3 35172816
    1078 7gss:A (2.2) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9398518
    1079 7gss:B (2.2) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9398518
    1080 7jr6:A (1.88) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33991628
    1081 7jr6:B (1.88) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33991628
    1082 7jr8:A (1.13) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33991628
    1083 7jr8:B (1.13) BS01 GSH 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 33991628
    1084 7kq8:A (2.15) BS01 GSH ? GO:0005515 ... Q9Y316 38640016
    1085 7kq8:B (2.15) BS01 GSH ? GO:0005515 ... Q9Y316 38640016
    1086 7kq8:C (2.15) BS01 GSH ? GO:0005515 ... Q9Y316 38640016
    1087 7kq8:D (2.15) BS01 GSH ? GO:0005515 ... Q9Y316 38640016
    1088 7lzh:A (3.57) BS02 GSH ? GO:0015276 ... Q8GXJ4 34161757
    1089 7lzh:B (3.57) BS02 GSH ? GO:0015276 ... Q8GXJ4 34161757
    1090 7lzh:C (3.57) BS02 GSH ? GO:0015276 ... Q8GXJ4 34161757
    1091 7lzh:D (3.57) BS02 GSH ? GO:0015276 ... Q8GXJ4 34161757
    1092 7m8h:A (1.75) BS01 GSH ? GO:0005515 ... Q9Y316 38640016
    1093 7m8h:B (1.75) BS01 GSH ? GO:0005515 ... Q9Y316 38640016
    1094 7m8h:C (1.75) BS01 GSH ? GO:0005515 ... Q9Y316 38640016
    1095 7m8h:D (1.75) BS01 GSH ? GO:0005515 ... Q9Y316 38640016
    1096 7nc5:A (1.95) BS01 GSH 2.5.1.18 GO:0140677 ... B0Y813 33909314
    1097 7nc5:B (1.95) BS01 GSH 2.5.1.18 GO:0140677 ... B0Y813 33909314
    1098 7nc5:C (1.95) BS01 GSH 2.5.1.18 GO:0140677 ... B0Y813 33909314
    1099 7nc5:D (1.95) BS01 GSH 2.5.1.18 GO:0140677 ... B0Y813 33909314
    1100 7nc5:E (1.95) BS01 GSH 2.5.1.18 GO:0140677 ... B0Y813 33909314
    1101 7nc5:F (1.95) BS01 GSH 2.5.1.18 GO:0140677 ... B0Y813 33909314
    1102 7opz:A (2.55) BS01 GSH 2.5.1.18 GO:0004364 ... G9B5E4 35054499
    1103 7opz:B (2.55) BS01 GSH 2.5.1.18 GO:0004364 ... G9B5E4 35054499
    1104 7opz:C (2.55) BS01 GSH 2.5.1.18 GO:0004364 ... G9B5E4 35054499
    1105 7opz:D (2.55) BS01 GSH 2.5.1.18 GO:0004364 ... G9B5E4 35054499
    1106 7pru:A (3.2) BS01 GSH ? GO:0005524 ... G0SBE6 35896548
    1107 7pru:B (3.2) BS01 GSH ? GO:0005524 ... G0SBE6 35896548
    1108 7rhp:A (1.54) BS01 GSH ? GO:0003824 ... A0A7M7GUY7 38163465
    1109 7rka:A (1.8) BS01 GSH 2.5.1.18 GO:0003824 ... A0A1P8PEY0 34769352
    1110 7so8:A (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1111 7so8:B (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1112 7so8:B (2.2) BS02 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1113 7so8:C (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1114 7so8:D (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1115 7so8:E (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1116 7so8:F (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1117 7so8:F (2.2) BS02 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1118 7so8:G (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1119 7so8:H (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 N/A
    1120 7xba:A (2.83) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    1121 7y55:A (2.19113) BS01 GSH 2.5.1.18 GO:0004364 ... A0A9E8RZN7 N/A
    1122 7y55:B (2.19113) BS01 GSH 2.5.1.18 GO:0004364 ... A0A9E8RZN7 N/A
    1123 7y55:C (2.19113) BS01 GSH 2.5.1.18 GO:0004364 ... A0A9E8RZN7 N/A
    1124 7y55:D (2.19113) BS01 GSH 2.5.1.18 GO:0004364 ... A0A9E8RZN7 N/A
    1125 7ylg:A (1.8) BS01 GSH 3.2.2.6 GO:0002224 ... H2D5F4 37079400
    1126 8a08:A (1.645) BS01 GSH 2.5.1.18 GO:0004364 ... D2X9R3 36032685
    1127 8agq:A (1.093) BS01 GSH 2.5.1.18 GO:0004364 ... B9MWW0 37881531
    1128 8ai8:A (1.7) BS01 GSH ? GO:0004364 ... Q55139 36291676
    1129 8ai8:B (1.7) BS01 GSH ? GO:0004364 ... Q55139 36291676
    1130 8ai9:A (1.7) BS01 GSH ? GO:0004364 ... Q55139 36291676
    1131 8ai9:B (1.7) BS01 GSH ? GO:0004364 ... Q55139 36291676
    1132 8aib:A (2.2) BS01 GSH ? GO:0004364 ... Q55139 36291676
    1133 8aib:B (2.2) BS01 GSH ? GO:0004364 ... Q55139 36291676
    1134 8awz:A (1.549) BS01 GSH 2.5.1.18 GO:0004364 ... A0A384E145 36758482
    1135 8awz:B (1.549) BS01 GSH 2.5.1.18 GO:0004364 ... A0A384E145 36758482
    1136 8ax2:A (1.62) BS01 GSH 2.5.1.18 GO:0004364 ... A0A384E145 36758482
    1137 8ax2:B (1.62) BS01 GSH 2.5.1.18 GO:0004364 ... A0A384E145 36758482
    1138 8ayx:A (2.5) BS02 GSH ? GO:0005198 ... Q84895 36434067
    1139 8ayx:C (2.5) BS01 GSH ? GO:0005198 ... Q84895 36434067
    1140 8ayy:A (2.6) BS02 GSH ? GO:0005198 ... Q84895 36434067
    1141 8ayy:C (2.6) BS01 GSH ? GO:0005198 ... Q84895 36434067
    1142 8by2:A (3.18) BS03 GSH ? GO:0000166 ... P03819 38834573
    1143 8by2:A (3.18) BS05 GSH ? GO:0000166 ... P03819 38834573
    1144 8by2:B (3.18) BS01 GSH ? GO:0000166 ... P03819 38834573
    1145 8by2:B (3.18) BS04 GSH ? GO:0000166 ... P03819 38834573
    1146 8czk:A (1.91) BS03 GSH 2.5.1.18 GO:0004364 ... O43813 36634136
    1147 8czk:B (1.91) BS04 GSH 2.5.1.18 GO:0004364 ... O43813 36634136
    1148 8d0v:A (1.79) BS02 GSH 2.5.1.18 GO:0004364 ... O43813 36634136
    1149 8d0v:B (1.79) BS02 GSH 2.5.1.18 GO:0004364 ... O43813 36634136
    1150 8d19:A (1.52) BS02 GSH 2.5.1.18 GO:0004364 ... O43813 36634136
    1151 8d19:B (1.52) BS02 GSH 2.5.1.18 GO:0004364 ... O43813 36634136
    1152 8gss:A (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9398518
    1153 8gss:B (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9398518
    1154 8gss:C (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9398518
    1155 8ix7:A (1.7) BS01 GSH 2.5.1.18 GO:0004364 ... A2XC69 N/A
    1156 8ix7:B (1.7) BS01 GSH 2.5.1.18 GO:0004364 ... A2XC69 N/A
    1157 8ixt:A (1.2) BS02 GSH ? GO:0005576 ... Q9R0D6 38636663
    1158 8jzk:A (2.55004) BS01 GSH 2.5.1.18 GO:0004364 ... A0A5N5L538 N/A
    1159 8qll:A (2.4) BS01 GSH N/A GO:0004364 ... Q9Z339 38441878
    1160 8qll:B (2.4) BS01 GSH N/A GO:0004364 ... Q9Z339 38441878
    1161 8swe:A (2.24) BS01 GSH 2.7.10.1 GO:0004672 ... P21802 38300868
    1162 8yr3:A (3.2) BS01 GSH N/A N/A Q9NP58 38822018
    1163 8yr3:B (3.2) BS01 GSH N/A N/A Q9NP58 38822018
    1164 9f7k:A (1.8) BS01 GSH N/A N/A Q7KK90 39062472
    1165 9f7k:B (1.8) BS01 GSH N/A N/A Q7KK90 39062472
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218