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BioLiP
Download all results in tab-seperated text for 1165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 4ivf:H (2.2) BS01 GSH 2.5.1.18 N/A A5E437 N/A
    602 4ivf:H (2.2) BS02 GSH 2.5.1.18 N/A A5E437 N/A
    603 4iw9:A (1.76) BS01 GSH N/A N/A N/A N/A
    604 4iw9:B (1.76) BS01 GSH N/A N/A N/A N/A
    605 4iw9:C (1.76) BS01 GSH N/A N/A N/A N/A
    606 4jbb:A (1.48) BS01 GSH ? GO:0004364 ... A6TBY7 N/A
    607 4jph:A (2.25) BS01 GSH ? GO:0005125 ... O88273 23850456
    608 4jph:B (2.25) BS01 GSH ? GO:0005125 ... O88273 23850456
    609 4jph:C (2.25) BS01 GSH ? GO:0005125 ... O88273 23850456
    610 4jph:D (2.25) BS01 GSH ? GO:0005125 ... O88273 23850456
    611 4kdx:A (1.35) BS01 GSH 2.5.1.18 GO:0004364 ... B1FZ96 N/A
    612 4kdx:B (1.35) BS01 GSH 2.5.1.18 GO:0004364 ... B1FZ96 N/A
    613 4kdy:A (1.5) BS01 GSH 5.2.1.2 GO:0003824 ... B8J605 N/A
    614 4kdy:B (1.5) BS01 GSH 5.2.1.2 GO:0003824 ... B8J605 N/A
    615 4kf9:A (2.3) BS02 GSH N/A N/A N/A N/A
    616 4kgi:A (1.6) BS01 GSH N/A N/A N/A N/A
    617 4kgi:B (1.6) BS01 GSH N/A N/A N/A N/A
    618 4kgi:C (1.6) BS01 GSH N/A N/A N/A N/A
    619 4kgi:D (1.6) BS01 GSH N/A N/A N/A N/A
    620 4kh7:A (1.5) BS01 GSH ? GO:0016740 ... Q8Z859 N/A
    621 4kh7:B (1.5) BS01 GSH ? GO:0016740 ... Q8Z859 N/A
    622 4kx4:A (1.6) BS01 GSH ? GO:0005829 ... P0AC59 N/A
    623 4l5l:A (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q25595 23916611
    624 4l5l:B (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... Q25595 23916611
    625 4l5o:A (2.09) BS01 GSH 2.5.1.18 GO:0004364 ... Q25595 23916611
    626 4l5o:B (2.09) BS01 GSH 2.5.1.18 GO:0004364 ... Q25595 23916611
    627 4l5o:C (2.09) BS02 GSH 2.5.1.18 GO:0004364 ... Q25595 23916611
    628 4l8e:A (1.7) BS01 GSH ? GO:0015036 ... D3VKV1 N/A
    629 4l8e:A (1.7) BS02 GSH ? GO:0015036 ... D3VKV1 N/A
    630 4l8e:A (1.7) BS03 GSH ? GO:0015036 ... D3VKV1 N/A
    631 4ma4:A (2.23) BS02 GSH 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 24295899
    632 4mf5:A (1.11) BS01 GSH 1.8.4.- GO:0016491 ... B1FXZ2 N/A
    633 4mf6:A (1.2) BS01 GSH 1.8.4.- GO:0016491 ... B1FXZ2 N/A
    634 4mf6:A (1.2) BS02 GSH 1.8.4.- GO:0016491 ... B1FXZ2 N/A
    635 4mpg:A (1.951) BS01 GSH 2.5.1.18 GO:0004364 ... P0CG30 N/A
    636 4mpg:B (1.951) BS01 GSH 2.5.1.18 GO:0004364 ... P0CG30 N/A
    637 4mrp:A (2.5) BS01 GSH 7.-.-.- GO:0005524 ... Q2G506 24604198
    638 4mrp:A (2.5) BS03 GSH 7.-.-.- GO:0005524 ... Q2G506 24604198
    639 4mrp:B (2.5) BS01 GSH 7.-.-.- GO:0005524 ... Q2G506 24604198
    640 4mrp:B (2.5) BS02 GSH 7.-.-.- GO:0005524 ... Q2G506 24604198
    641 4myh:B (3.38) BS01 GSH 7.-.-.- GO:0005524 ... P40416 24604199 PDBbind: -logKd/Ki=4.64, Kd=23uM
    642 4nhw:A (2.0) BS01 GSH N/A N/A N/A N/A
    643 4nhw:B (2.0) BS01 GSH N/A N/A N/A N/A
    644 4nhw:C (2.0) BS01 GSH N/A N/A N/A N/A
    645 4nhw:D (2.0) BS01 GSH N/A N/A N/A N/A
    646 4nhz:A (1.901) BS01 GSH N/A N/A N/A N/A
    647 4nhz:B (1.901) BS01 GSH N/A N/A N/A N/A
    648 4nhz:C (1.901) BS01 GSH N/A N/A N/A N/A
    649 4nhz:D (1.901) BS01 GSH N/A N/A N/A N/A
    650 4nhz:E (1.901) BS01 GSH N/A N/A N/A N/A
    651 4nhz:F (1.901) BS01 GSH N/A N/A N/A N/A
    652 4nhz:G (1.901) BS01 GSH N/A N/A N/A N/A
    653 4nhz:H (1.901) BS01 GSH N/A N/A N/A N/A
    654 4nhz:I (1.901) BS01 GSH N/A N/A N/A N/A
    655 4nhz:J (1.901) BS01 GSH N/A N/A N/A N/A
    656 4nhz:K (1.901) BS01 GSH N/A N/A N/A N/A
    657 4nhz:L (1.901) BS01 GSH N/A N/A N/A N/A
    658 4nhz:M (1.901) BS01 GSH N/A N/A N/A N/A
    659 4nhz:N (1.901) BS01 GSH N/A N/A N/A N/A
    660 4nhz:O (1.901) BS01 GSH N/A N/A N/A N/A
    661 4nhz:P (1.901) BS01 GSH N/A N/A N/A N/A
    662 4ntb:A (2.7) BS01 GSH 2.5.1.-
    4.4.1.20
    GO:0004464 ... Q60860 N/A
    663 4ntd:A (1.6) BS01 GSH 1.8.1.9 GO:0000166 ... E2PZ87 24446392
    664 4ofm:A (2.64) BS01 GSH ? GO:0004364 ... D3U1A5 25195885
    665 4ofm:B (2.64) BS01 GSH ? GO:0004364 ... D3U1A5 25195885
    666 4ofm:C (2.64) BS01 GSH ? GO:0004364 ... D3U1A5 25195885
    667 4ofm:D (2.64) BS01 GSH ? GO:0004364 ... D3U1A5 25195885
    668 4ofn:A (2.69) BS01 GSH ? GO:0004364 ... D3U1A5 25195885
    669 4ofn:B (2.69) BS01 GSH ? GO:0004364 ... D3U1A5 25195885
    670 4pg2:A (2.8) BS02 GSH ? N/A P01899 25135637
    671 4pnf:A (2.11) BS01 GSH ? GO:0003824 ... Q7JZM3 26457432
    672 4pnf:B (2.11) BS01 GSH ? GO:0003824 ... Q7JZM3 26457432
    673 4pnf:C (2.11) BS01 GSH ? GO:0003824 ... Q7JZM3 26457432
    674 4pnf:D (2.11) BS01 GSH ? GO:0003824 ... Q7JZM3 26457432
    675 4pnf:E (2.11) BS01 GSH ? GO:0003824 ... Q7JZM3 26457432
    676 4pnf:F (2.11) BS01 GSH ? GO:0003824 ... Q7JZM3 26457432
    677 4pnf:G (2.11) BS01 GSH ? GO:0003824 ... Q7JZM3 26457432
    678 4pnf:H (2.11) BS01 GSH ? GO:0003824 ... Q7JZM3 26457432
    679 4pqh:A (1.4) BS01 GSH ? GO:0004364 ... B9HM14 24825169
    680 4pqh:B (1.4) BS01 GSH ? GO:0004364 ... B9HM14 24825169
    681 4pqi:A (1.95) BS01 GSH N/A GO:0004364 ... N/A 24825169
    682 4pua:A (1.708) BS01 GSH N/A N/A N/A N/A
    683 4pua:A (1.708) BS02 GSH N/A N/A N/A N/A
    684 4pxo:A (1.8) BS01 GSH 2.5.1.18
    5.2.1.2
    GO:0003824 ... C5ATQ9 N/A
    685 4pxo:B (1.8) BS01 GSH 2.5.1.18
    5.2.1.2
    GO:0003824 ... C5ATQ9 N/A
    686 4pyr:A (1.45) BS01 GSH ? N/A Q7P0B4 N/A
    687 4q5f:A (2.448) BS01 GSH 2.5.1.18 GO:0004364 ... P46436 N/A
    688 4q5f:D (2.448) BS01 GSH 2.5.1.18 GO:0004364 ... P46436 N/A
    689 4q5f:D (2.448) BS02 GSH 2.5.1.18 GO:0004364 ... P46436 N/A
    690 4q5n:A (2.55) BS01 GSH 2.5.1.18 GO:0004364 ... C8CGT7 N/A
    691 4q5n:B (2.55) BS01 GSH 2.5.1.18 GO:0004364 ... C8CGT7 N/A
    692 4q5q:A (1.931) BS01 GSH 2.5.1.18 GO:0004364 ... P46419 N/A
    693 4q5q:B (1.931) BS01 GSH 2.5.1.18 GO:0004364 ... P46419 N/A
    694 4q5r:A (2.249) BS01 GSH 2.5.1.18 GO:0004364 ... O18598 N/A
    695 4q5r:B (2.249) BS01 GSH 2.5.1.18 GO:0004364 ... O18598 N/A
    696 4q5r:C (2.249) BS01 GSH 2.5.1.18 GO:0004364 ... O18598 N/A
    697 4q5r:D (2.249) BS01 GSH 2.5.1.18 GO:0004364 ... O18598 N/A
    698 4q5r:E (2.249) BS01 GSH 2.5.1.18 GO:0004364 ... O18598 N/A
    699 4q5r:F (2.249) BS01 GSH 2.5.1.18 GO:0004364 ... O18598 N/A
    700 4qq7:A (2.2) BS01 GSH ? GO:0004364 ... B4E6Q3 N/A
    701 4qq7:B (2.2) BS01 GSH ? GO:0004364 ... B4E6Q3 N/A
    702 4ri6:A (1.523) BS01 GSH 2.5.1.18 GO:0004364 ... A9PHH6 25566286
    703 4ri6:B (1.523) BS01 GSH 2.5.1.18 GO:0004364 ... A9PHH6 25566286
    704 4ri7:A (1.798) BS01 GSH 2.5.1.18 GO:0004364 ... A9PHH6 25566286
    705 4ri7:B (1.798) BS01 GSH 2.5.1.18 GO:0004364 ... A9PHH6 25566286
    706 4top:A (2.351) BS01 GSH 2.5.1.18 GO:0004364 ... O49235 N/A
    707 4top:B (2.351) BS01 GSH 2.5.1.18 GO:0004364 ... O49235 N/A
    708 4tr1:A (1.582) BS01 GSH ? GO:0005737 ... A8MJH2 25218089
    709 4tr1:B (1.582) BS01 GSH ? GO:0005737 ... A8MJH2 25218089
    710 4uss:A (2.5) BS01 GSH N/A GO:0004364 ... N/A 25455804
    711 4w66:A (2.36) BS01 GSH ? GO:0004364 ... D0LNW1 N/A
    712 4w66:B (2.36) BS01 GSH ? GO:0004364 ... D0LNW1 N/A
    713 4wab:A (2.704) BS01 GSH 1.11.1.-
    2.5.1.-
    2.5.1.18
    4.4.1.20
    5.3.99.3
    GO:0001516 ... O14684
    Q16873
    25506719
    714 4wr4:A (1.6) BS01 GSH 2.5.1.18 GO:0004364 ... P08515 25985257
    715 4wr5:A (1.93) BS01 GSH 2.5.1.18 GO:0004364 ... P08515 25985257
    716 4xt0:A (2.07) BS01 GSH ? N/A G2IN92 26637355
    717 4yan:A (2.593) BS01 GSH ? N/A G2IN93 26637355
    718 4yan:B (2.593) BS01 GSH ? N/A G2IN93 26637355
    719 4yan:C (2.593) BS01 GSH ? N/A G2IN93 26637355
    720 4yan:D (2.593) BS01 GSH ? N/A G2IN93 26637355
    721 4yh2:A (1.72) BS01 GSH 2.5.1.18 GO:0003824 ... A1ZB71 26487708
    722 4yh2:B (1.72) BS01 GSH 2.5.1.18 GO:0003824 ... A1ZB71 26487708
    723 4yh2:C (1.72) BS01 GSH 2.5.1.18 GO:0003824 ... A1ZB71 26487708
    724 4yh2:D (1.72) BS01 GSH 2.5.1.18 GO:0003824 ... A1ZB71 26487708
    725 4yk5:A (1.42) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 25961169
    726 4yl0:A (1.52) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 25961169
    727 4yl1:A (1.41) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 25961169
    728 4yl3:A (1.41) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 25961169
    729 4ysl:A (1.4618) BS02 GSH ? GO:0006749 ... A5VWI3 26082492 MOAD: Kd=1.6uM
    PDBbind: -logKd/Ki=5.80, Kd=1.6uM
    730 4ysl:B (1.4618) BS02 GSH ? GO:0006749 ... A5VWI3 26082492 MOAD: Kd=1.6uM
    PDBbind: -logKd/Ki=5.80, Kd=1.6uM
    731 4z04:A (1.45) BS01 GSH ? GO:0046872 ... Q2YLQ3 N/A
    732 4z3d:A (1.8) BS01 GSH 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805 MOAD: Ka=87200M^-1
    733 4z3d:B (1.8) BS01 GSH 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805 MOAD: Ka=87200M^-1
    734 4z3d:C (1.8) BS01 GSH 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805 MOAD: Ka=87200M^-1
    735 4z3d:D (1.8) BS01 GSH 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805 MOAD: Ka=87200M^-1
    736 4z9n:A (1.745) BS01 GSH ? N/A A0A0M3KL33 N/A
    737 4z9n:B (1.745) BS01 GSH ? N/A A0A0M3KL33 N/A
    738 4z9n:C (1.745) BS01 GSH ? N/A A0A0M3KL33 N/A
    739 4z9n:D (1.745) BS01 GSH ? N/A A0A0M3KL33 N/A
    740 4z9n:E (1.745) BS01 GSH ? N/A A0A0M3KL33 N/A
    741 4z9n:F (1.745) BS01 GSH ? N/A A0A0M3KL33 N/A
    742 4zbd:A (1.12) BS01 GSH ? N/A A0A0R4I981 26348000 MOAD: Kd=1.6uM
    743 4zbd:A (1.12) BS02 GSH ? N/A A0A0R4I981 26348000 MOAD: Kd=1.6uM
    744 4zbd:B (1.12) BS01 GSH ? N/A A0A0R4I981 26348000 MOAD: Kd=1.6uM
    745 4zbd:B (1.12) BS02 GSH ? N/A A0A0R4I981 26348000 MOAD: Kd=1.6uM
    746 5ais:A (1.85) BS02 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    747 5ais:B (1.85) BS02 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    748 5ais:C (1.85) BS02 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    749 5ais:D (1.85) BS02 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    750 5aiv:A (2.04) BS02 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    751 5aiv:B (2.04) BS02 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    752 5aiv:C (2.04) BS02 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    753 5aiv:D (2.04) BS02 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    754 5aix:B (2.1) BS01 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    755 5aix:C (2.1) BS01 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 25978964
    756 5an1:A (2.0) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 27717103
    757 5an1:B (2.0) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 27717103
    758 5an1:C (2.0) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 27717103
    759 5an1:D (2.0) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 27717103
    760 5an1:E (2.0) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 27717103
    761 5an1:F (2.0) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 27717103
    762 5an1:G (2.0) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 27717103
    763 5an1:H (2.0) BS01 GSH 2.5.1.18 GO:0004364 ... Q49SB0 27717103
    764 5b7c:A (2.35) BS01 GSH ? GO:0004364 ... A0A1C7D1H4 27499004
    765 5bqg:A (1.436) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 26653180
    766 5bqh:A (1.601) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 26653180
    767 5bqi:A (1.88) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 26653180
    768 5d73:A (2.33) BS01 GSH 2.5.1.18 GO:0004364 ... Q86LL8 N/A
    769 5d73:B (2.33) BS01 GSH 2.5.1.18 GO:0004364 ... Q86LL8 N/A
    770 5d9x:A (1.68) BS01 GSH 1.8.5.1
    2.5.1.18
    GO:0004364 ... Q65XA0 26775680
    771 5dal:A (1.5) BS02 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    772 5dal:B (1.5) BS02 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    773 5ddl:A (1.98) BS02 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    774 5ddl:B (1.98) BS03 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    775 5djl:A (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    776 5djl:B (1.8) BS03 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    777 5ech:B (2.14) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    778 5ech:C (2.14) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    779 5ech:E (2.14) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    780 5ech:F (2.14) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    781 5eci:B (1.56) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    782 5eci:C (1.56) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    783 5eci:E (1.56) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    784 5eci:F (1.56) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    785 5eck:B (1.54) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    786 5eck:C (1.54) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    787 5eck:E (1.54) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    788 5eck:F (1.54) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    789 5ecl:B (1.85) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    790 5ecl:C (1.85) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    791 5ecl:E (1.85) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    792 5ecl:F (1.85) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    793 5ecm:B (1.6) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    794 5ecm:C (1.6) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    795 5ecm:E (1.6) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    796 5ecm:F (1.6) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    797 5ecn:B (1.72) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    798 5ecn:C (1.72) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    799 5ecn:E (1.72) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489
    800 5ecn:F (1.72) BS01 GSH 2.5.1.18 GO:0004364 ... Q8L7C9 28223489

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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