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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g6s:A (1.5) BS02 GPJ 2.5.1.19 GO:0003824 ... P0A6D3 11171958
    2 1rf6:A (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    3 1rf6:B (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    4 1rf6:C (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    5 1rf6:D (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    6 2aay:A (1.55) BS02 GPJ 2.5.1.19 GO:0003824 ... P0A6D3 16225867 MOAD: ic50=1.7mM
    7 2gga:A (1.7) BS02 GPJ 2.5.1.19 GO:0003824 ... Q9R4E4 16916934 MOAD: Ki=6mM
    PDBbind: -logKd/Ki=1.96, IC50=11mM
    8 2ggd:A (1.7) BS02 GPJ 2.5.1.19 GO:0003824 ... Q9R4E4 16916934 MOAD: ic50=160uM
    PDBbind: -logKd/Ki=3.80, IC50=160uM
    9 2qft:A (1.55) BS01 GPJ 2.5.1.19 GO:0003824 ... P0A6D3 17855366 PDBbind: -logKd/Ki=5.26, Ki=5.5uM
    10 2qfu:A (1.6) BS01 GPJ 2.5.1.19 GO:0003824 ... P0A6D3 17855366 PDBbind: -logKd/Ki=4.18, Ki=66uM
    11 3nvs:A (1.021) BS03 GPJ 2.5.1.19 GO:0003824 ... Q9KRB0 N/A
    12 3slh:A (1.7) BS02 GPJ 2.5.1.19 GO:0003824 ... Q83E11 N/A
    13 3slh:B (1.7) BS02 GPJ 2.5.1.19 GO:0003824 ... Q83E11 N/A
    14 3slh:B (1.7) BS04 GPJ 2.5.1.19 GO:0003824 ... Q83E11 N/A
    15 3slh:C (1.7) BS01 GPJ 2.5.1.19 GO:0003824 ... Q83E11 N/A
    16 3slh:D (1.7) BS01 GPJ 2.5.1.19 GO:0003824 ... Q83E11 N/A
    17 7f7m:A (2.47) BS01 GPJ ? GO:0000166 ... A0A5J6VLZ7 N/A
    18 7tm6:A (1.26) BS02 GPJ 2.5.1.19 GO:0003824 ... A0A0H3GV01 N/A
    19 7tm6:B (1.26) BS02 GPJ 2.5.1.19 GO:0003824 ... A0A0H3GV01 N/A
    20 8umj:A (1.93) BS01 GPJ N/A N/A A0A1D6NVZ6 39159366
    21 8umj:B (1.93) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    22 8umk:A (1.9) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    23 8umk:B (1.9) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    24 8uml:A (1.83) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    25 8uml:B (1.83) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    26 8umm:A (2.2) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    27 8umm:B (2.2) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    28 8umn:A (1.6) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    29 8umn:B (1.6) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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