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BioLiP
Download all results in tab-seperated text for 780 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 6ug8:L (1.89) BS01 GLA N/A N/A N/A 31831622
    602 6ug9:B (2.74) BS02 GLA N/A N/A N/A 31831622
    603 6ug9:K (2.74) BS02 GLA N/A N/A N/A 31831622
    604 6ug9:L (2.74) BS02 GLA N/A N/A N/A 31831622
    605 6yh0:AAA (1.56) BS03 GLA ? GO:0046872 ... Q8X123 34235469
    606 6yh0:AAA (1.56) BS04 GLA ? GO:0046872 ... Q8X123 34235469
    607 6yh0:AAA (1.56) BS05 GLA ? GO:0046872 ... Q8X123 34235469
    608 6yh0:AAA (1.56) BS06 GLA ? GO:0046872 ... Q8X123 34235469
    609 6yh0:AAA (1.56) BS07 GLA ? GO:0046872 ... Q8X123 34235469
    610 7b6s:AAA (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    611 7b6s:BBB (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    612 7b6s:CCC (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    613 7b6s:DDD (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    614 7b6s:EEE (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    615 7b6s:FFF (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    616 7b6s:GGG (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    617 7b6s:HHH (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    618 7b6s:III (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    619 7b6s:JJJ (1.923) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    620 7b6t:AAA (1.701) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    621 7b6t:CCC (1.701) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    622 7b6t:DDD (1.701) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    623 7b6t:FFF (1.701) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    624 7b6t:HHH (1.701) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    625 7b6t:JJJ (1.701) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    626 7b6u:AAA (1.901) BS02 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    627 7b6u:BBB (1.901) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    628 7b6u:CCC (1.901) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    629 7b6u:DDD (1.901) BS02 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    630 7b6u:EEE (1.901) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    631 7b6u:FFF (1.901) BS02 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    632 7b6u:GGG (1.901) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    633 7b6u:HHH (1.901) BS02 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    634 7b6u:III (1.901) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    635 7b6u:JJJ (1.901) BS02 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    636 7b6v:AAA (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    637 7b6v:BBB (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    638 7b6v:CCC (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    639 7b6v:DDD (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    640 7b6v:EEE (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    641 7b6v:FFF (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    642 7b6v:GGG (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    643 7b6v:HHH (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    644 7b6v:III (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    645 7b6v:JJJ (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    646 7byt:A (1.5) BS02 GLA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    647 7eqt:A (2.05) BS01 GLA ? N/A Q66418 35658530
    648 7er1:A (2.2) BS01 GLA ? N/A I3V9L6 35658530
    649 7exj:A (2.47) BS02 GLA 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    650 7exj:B (2.47) BS02 GLA 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    651 7exr:A (2.0) BS01 GLA 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    652 7exr:A (2.0) BS02 GLA 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    653 7exr:B (2.0) BS01 GLA 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    654 7exr:B (2.0) BS02 GLA 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    655 7jw4:A (2.342) BS01 GLA N/A N/A N/A 33127644
    656 7jw4:B (2.342) BS01 GLA N/A N/A N/A 33127644
    657 7jwf:A (2.187) BS02 GLA N/A N/A N/A 33127644
    658 7jwf:B (2.187) BS02 GLA N/A N/A N/A 33127644
    659 7jwf:C (2.187) BS02 GLA N/A N/A N/A 33127644
    660 7jwf:D (2.187) BS02 GLA N/A N/A N/A 33127644
    661 7kmo:A (1.753) BS01 GLA N/A GO:0004565 ... N/A N/A
    662 7mzs:A (1.72) BS01 GLA ? N/A A0A2X2BLR9 35700218
    663 7p8h:A (1.13) BS02 GLA N/A GO:0030246 ... N/A 34944498
    664 7p8h:C (1.13) BS02 GLA N/A GO:0030246 ... N/A 34944498
    665 7qqh:A (2.25) BS02 GLA 3.2.1.- GO:0004553 ... Q6NSJ0 36129849
    666 7qqh:B (2.25) BS02 GLA 3.2.1.- GO:0004553 ... Q6NSJ0 36129849
    667 7qqh:C (2.25) BS02 GLA 3.2.1.- GO:0004553 ... Q6NSJ0 36129849
    668 7qqh:D (2.25) BS02 GLA 3.2.1.- GO:0004553 ... Q6NSJ0 36129849
    669 7r55:A (1.84) BS03 GLA ? N/A F2UID9 36097056
    670 7r55:A (1.84) BS06 GLA ? N/A F2UID9 36097056
    671 7r55:B (1.84) BS02 GLA ? N/A F2UID9 36097056
    672 7r55:B (1.84) BS05 GLA ? N/A F2UID9 36097056
    673 7rcl:A (2.4) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    674 7rcl:B (2.4) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    675 7rcl:C (2.4) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    676 7rcl:D (2.4) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    677 7rcm:A (2.1) BS02 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    678 7rcm:B (2.1) BS02 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    679 7s49:A (2.2) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    680 7s49:B (2.2) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    681 7s4c:A (2.2) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    682 7s4c:B (2.2) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 34491744
    683 7uem:D (2.314) BS02 GLA N/A N/A N/A 35867757
    684 7uem:H (2.314) BS02 GLA N/A N/A N/A 35867757
    685 7uen:H (1.55) BS02 GLA N/A N/A N/A 35867757
    686 7uen:L (1.55) BS01 GLA N/A N/A N/A 35867757
    687 8abp:A (1.49) BS01 GLA ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.010uM
    688 8ibs:A (1.9) BS01 GLA 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    689 8ibs:B (1.9) BS01 GLA 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    690 8ibs:C (1.9) BS01 GLA 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    691 8ibs:D (1.9) BS01 GLA 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    692 8ibs:E (1.9) BS01 GLA 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    693 8ibs:F (1.9) BS01 GLA 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    694 8j51:A (2.15) BS01 GLA 3.2.1.22 GO:0004553 ... A0A0E9MUN5 37438884
    695 8j51:B (2.15) BS01 GLA 3.2.1.22 GO:0004553 ... A0A0E9MUN5 37438884
    696 8j52:A (1.9) BS01 GLA 3.2.1.22 GO:0004553 ... A0A0E9MUN5 37438884
    697 8j52:B (1.9) BS01 GLA 3.2.1.22 GO:0004553 ... A0A0E9MUN5 37438884
    698 8oxs:C (1.6) BS01 GLA N/A N/A P01556 N/A
    699 8oxs:D (1.6) BS01 GLA N/A N/A P01556 N/A
    700 8oxs:E (1.6) BS01 GLA N/A N/A P01556 N/A
    701 8oxs:G (1.6) BS02 GLA N/A N/A P01556 N/A
    702 8oxs:H (1.6) BS02 GLA N/A N/A P01556 N/A
    703 8oxs:K (1.6) BS01 GLA N/A N/A P01556 N/A
    704 8oxs:L (1.6) BS01 GLA N/A N/A P01556 N/A
    705 8pvs:A (1.68) BS01 GLA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    706 8pvs:B (1.68) BS01 GLA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    707 8qre:C (2.3) BS01 GLA ? GO:0005515 ... P01556 38359344
    708 8wa2:A (3.0) BS32 GLA ? N/A A8J9H7 38552612
    709 8wa2:A (3.0) BS33 GLA ? N/A A8J9H7 38552612
    710 8wa2:A (3.0) BS34 GLA ? N/A A8J9H7 38552612
    711 8wa2:A (3.0) BS35 GLA ? N/A A8J9H7 38552612
    712 8wa2:A (3.0) BS36 GLA ? N/A A8J9H7 38552612
    713 8wa2:A (3.0) BS37 GLA ? N/A A8J9H7 38552612
    714 8wa2:A (3.0) BS38 GLA ? N/A A8J9H7 38552612
    715 8wa2:A (3.0) BS39 GLA ? N/A A8J9H7 38552612
    716 8wa2:A (3.0) BS40 GLA ? N/A A8J9H7 38552612
    717 8wa2:A (3.0) BS41 GLA ? N/A A8J9H7 38552612
    718 8wa2:A (3.0) BS42 GLA ? N/A A8J9H7 38552612
    719 8wa2:B (3.0) BS41 GLA ? N/A A8J9H7 38552612
    720 8wa2:B (3.0) BS42 GLA ? N/A A8J9H7 38552612
    721 8wa2:B (3.0) BS43 GLA ? N/A A8J9H7 38552612
    722 8wa2:B (3.0) BS44 GLA ? N/A A8J9H7 38552612
    723 8wa2:B (3.0) BS45 GLA ? N/A A8J9H7 38552612
    724 8wa2:B (3.0) BS46 GLA ? N/A A8J9H7 38552612
    725 8wa2:B (3.0) BS47 GLA ? N/A A8J9H7 38552612
    726 8wa2:B (3.0) BS48 GLA ? N/A A8J9H7 38552612
    727 8wa2:B (3.0) BS49 GLA ? N/A A8J9H7 38552612
    728 8wa2:B (3.0) BS50 GLA ? N/A A8J9H7 38552612
    729 8wa2:B (3.0) BS51 GLA ? N/A A8J9H7 38552612
    730 8wa2:C (3.0) BS19 GLA ? N/A A8J9H7 38552612
    731 8wa2:C (3.0) BS20 GLA ? N/A A8J9H7 38552612
    732 8wa2:C (3.0) BS21 GLA ? N/A A8J9H7 38552612
    733 8wa2:D (3.0) BS26 GLA ? N/A A8J9H7 38552612
    734 8wa2:D (3.0) BS27 GLA ? N/A A8J9H7 38552612
    735 8wa2:D (3.0) BS28 GLA ? N/A A8J9H7 38552612
    736 8wa2:E (3.0) BS33 GLA ? N/A A8J9H7 38552612
    737 8wa2:E (3.0) BS34 GLA ? N/A A8J9H7 38552612
    738 8wa2:E (3.0) BS35 GLA ? N/A A8J9H7 38552612
    739 8wa2:E (3.0) BS36 GLA ? N/A A8J9H7 38552612
    740 8wa2:E (3.0) BS37 GLA ? N/A A8J9H7 38552612
    741 8wa2:E (3.0) BS38 GLA ? N/A A8J9H7 38552612
    742 8wa2:E (3.0) BS39 GLA ? N/A A8J9H7 38552612
    743 8wa2:E (3.0) BS40 GLA ? N/A A8J9H7 38552612
    744 8wa2:E (3.0) BS41 GLA ? N/A A8J9H7 38552612
    745 8wa2:F (3.0) BS35 GLA ? N/A A8J9H7 38552612
    746 8wa2:F (3.0) BS36 GLA ? N/A A8J9H7 38552612
    747 8wa2:F (3.0) BS37 GLA ? N/A A8J9H7 38552612
    748 8wa2:F (3.0) BS38 GLA ? N/A A8J9H7 38552612
    749 8wa2:F (3.0) BS39 GLA ? N/A A8J9H7 38552612
    750 8wa2:F (3.0) BS40 GLA ? N/A A8J9H7 38552612
    751 8wa2:F (3.0) BS41 GLA ? N/A A8J9H7 38552612
    752 8wa2:F (3.0) BS42 GLA ? N/A A8J9H7 38552612
    753 8wa2:F (3.0) BS43 GLA ? N/A A8J9H7 38552612
    754 8wa2:F (3.0) BS44 GLA ? N/A A8J9H7 38552612
    755 8wa2:F (3.0) BS45 GLA ? N/A A8J9H7 38552612
    756 8wa2:F (3.0) BS46 GLA ? N/A A8J9H7 38552612
    757 8yk3:A (3.5) BS01 GLA N/A N/A L8B3G2 39234034
    758 8yk3:B (3.5) BS01 GLA N/A N/A L8B3G2 39234034
    759 9abp:A (1.97) BS01 GLA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.01uM
    760 9b4h:A (3.1) BS28 GLA ? N/A A8J9H7 38552624
    761 9b4h:A (3.1) BS29 GLA ? N/A A8J9H7 38552624
    762 9b4h:A (3.1) BS30 GLA ? N/A A8J9H7 38552624
    763 9b4h:A (3.1) BS31 GLA ? N/A A8J9H7 38552624
    764 9b4h:A (3.1) BS32 GLA ? N/A A8J9H7 38552624
    765 9b4h:A (3.1) BS33 GLA ? N/A A8J9H7 38552624
    766 9b4h:A (3.1) BS34 GLA ? N/A A8J9H7 38552624
    767 9b4h:A (3.1) BS35 GLA ? N/A A8J9H7 38552624
    768 9b4h:A (3.1) BS36 GLA ? N/A A8J9H7 38552624
    769 9b4h:A (3.1) BS37 GLA ? N/A A8J9H7 38552624
    770 9b4h:A (3.1) BS38 GLA ? N/A A8J9H7 38552624
    771 9b4h:B (3.1) BS30 GLA ? N/A A8J9H7 38552624
    772 9b4h:B (3.1) BS31 GLA ? N/A A8J9H7 38552624
    773 9b4h:B (3.1) BS32 GLA ? N/A A8J9H7 38552624
    774 9b4h:B (3.1) BS33 GLA ? N/A A8J9H7 38552624
    775 9b4h:B (3.1) BS34 GLA ? N/A A8J9H7 38552624
    776 9b4h:B (3.1) BS35 GLA ? N/A A8J9H7 38552624
    777 9b4h:B (3.1) BS36 GLA ? N/A A8J9H7 38552624
    778 9b4h:B (3.1) BS37 GLA ? N/A A8J9H7 38552624
    779 9b4h:B (3.1) BS38 GLA ? N/A A8J9H7 38552624
    780 9b4h:B (3.1) BS39 GLA ? N/A A8J9H7 38552624
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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