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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1f3b:A (2.0) BS01 GBX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P13745 11027134
    2 1f3b:A (2.0) BS02 GBX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P13745 11027134
    3 1f3b:B (2.0) BS01 GBX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P13745 11027134
    4 1f3b:B (2.0) BS02 GBX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P13745 11027134
    5 1ml6:A (1.9) BS01 GBX 2.5.1.18 GO:0004364 ... P10648 12549910
    6 1ml6:A (1.9) BS02 GBX 2.5.1.18 GO:0004364 ... P10648 12549910
    7 1ml6:B (1.9) BS01 GBX 2.5.1.18 GO:0004364 ... P10648 12549910
    8 1ml6:B (1.9) BS02 GBX 2.5.1.18 GO:0004364 ... P10648 12549910
    9 3pgt:A (2.14) BS01 GBX 2.5.1.18 GO:0000302 ... P09211 10441116
    10 3pgt:B (2.14) BS01 GBX 2.5.1.18 GO:0000302 ... P09211 10441116
    11 4pgt:A (2.1) BS01 GBX 2.5.1.18 GO:0000302 ... P09211 10441116
    12 4pgt:B (2.1) BS01 GBX 2.5.1.18 GO:0000302 ... P09211 10441116
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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