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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 209 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bg3:A (2.8) BS02 G6P 2.7.1.1 GO:0001666 ... P05708 9665168
    2 1bg3:A (2.8) BS04 G6P 2.7.1.1 GO:0001666 ... P05708 9665168
    3 1bg3:B (2.8) BS02 G6P 2.7.1.1 GO:0001666 ... P05708 9665168
    4 1bg3:B (2.8) BS04 G6P 2.7.1.1 GO:0001666 ... P05708 9665168
    5 1cza:N (1.9) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 10686099
    6 1cza:N (1.9) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 10686099
    7 1gpy:A (2.4) BS01 G6P 2.4.1.1 GO:0000166 ... P00489 8331662 MOAD: Kd~25uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    8 1gz5:A (2.43) BS02 G6P 2.4.1.15 GO:0003824 ... P31677 12498887
    9 1gz5:B (2.43) BS02 G6P 2.4.1.15 GO:0003824 ... P31677 12498887
    10 1gz5:C (2.43) BS02 G6P 2.4.1.15 GO:0003824 ... P31677 12498887
    11 1gz5:D (2.43) BS02 G6P 2.4.1.15 GO:0003824 ... P31677 12498887
    12 1hkb:A (2.8) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 9493266
    13 1hkb:A (2.8) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 9493266
    14 1hkb:B (2.8) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 9493266
    15 1hkb:B (2.8) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 9493266
    16 1mor:A (1.9) BS01 G6P 2.6.1.16 GO:0004360 ... P17169 10091662
    17 1p5g:X (1.61) BS01 G6P 5.4.2.2
    5.4.2.8
    GO:0000287 ... P26276 14725765
    18 1qha:A (2.25) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    19 1qha:A (2.25) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    20 1qha:B (2.25) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    21 1qha:B (2.25) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    22 1u0f:A (1.6) BS01 G6P 5.3.1.9 GO:0001701 ... P06745 15342241
    23 1u8x:X (2.05) BS01 G6P 3.2.1.122 GO:0003824 ... P54716 15341727
    24 1up6:A (2.55) BS03 G6P 3.2.1.86 GO:0003824 ... Q9X108 15237973
    25 1up6:C (2.55) BS03 G6P 3.2.1.86 GO:0003824 ... Q9X108 15237973
    26 1up7:A (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    27 1up7:B (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    28 1up7:C (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    29 1up7:D (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    30 1up7:E (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    31 1up7:F (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    32 1up7:G (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    33 1up7:H (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    34 2acq:A (1.76) BS01 G6P 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 8117658
    35 2vez:A (1.45) BS02 G6P 2.3.1.4 GO:0004343 ... Q4WCU5 18005663 MOAD: Ki=2.6mM
    36 2wf9:A (1.4) BS02 G6P 5.4.2.6 GO:0000287 ... P71447 22505741
    37 2zj3:A (1.9) BS01 G6P 2.6.1.16 GO:0097367 ... Q06210 19059404
    38 3nb0:A (2.406) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 20876143
    39 3nb0:A (2.406) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 20876143
    40 3nb0:B (2.406) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 20876143
    41 3nb0:B (2.406) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 20876143
    42 3nb0:C (2.406) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 20876143
    43 3nb0:D (2.406) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 20876143
    44 3ooj:A (2.5) BS02 G6P 2.6.1.16 GO:0004360 ... P17169 22851174
    45 3ooj:B (2.5) BS03 G6P 2.6.1.16 GO:0004360 ... P17169 22851174
    46 3ooj:C (2.5) BS02 G6P 2.6.1.16 GO:0004360 ... P17169 22851174
    47 3ooj:D (2.5) BS03 G6P 2.6.1.16 GO:0004360 ... P17169 22851174
    48 3ooj:E (2.5) BS02 G6P 2.6.1.16 GO:0004360 ... P17169 22851174
    49 3ooj:F (2.5) BS03 G6P 2.6.1.16 GO:0004360 ... P17169 22851174
    50 3ooj:G (2.5) BS02 G6P 2.6.1.16 GO:0004360 ... P17169 22851174
    51 3ooj:H (2.5) BS03 G6P 2.6.1.16 GO:0004360 ... P17169 22851174
    52 3rt1:A (2.8) BS06 G6P 2.4.1.11 GO:0004373 ... P27472 21835915
    53 3rt1:B (2.8) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 21835915
    54 3rt1:B (2.8) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 21835915
    55 3rt1:C (2.8) BS04 G6P 2.4.1.11 GO:0004373 ... P27472 21835915
    56 3rt1:D (2.8) BS05 G6P 2.4.1.11 GO:0004373 ... P27472 21835915
    57 4bxc:A (2.86) BS01 G6P 4.1.1.31 GO:0003824 ... P30694 24043710
    58 4bxc:B (2.86) BS01 G6P 4.1.1.31 GO:0003824 ... P30694 24043710
    59 4kq1:A (2.66) BS02 G6P N/A GO:0004373 ... N/A 24324135
    60 4kq1:B (2.66) BS02 G6P N/A GO:0004373 ... N/A 24324135
    61 4kq1:C (2.66) BS02 G6P N/A GO:0004373 ... N/A 24324135
    62 4kq1:D (2.66) BS02 G6P N/A GO:0004373 ... N/A 24324135
    63 4kq2:A (2.95) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 24324135
    64 4kq2:B (2.95) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 24324135
    65 4kq2:C (2.95) BS03 G6P 2.4.1.11 GO:0004373 ... P27472 24324135
    66 4kq2:D (2.95) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 24324135
    67 4kqm:A (2.77) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 24324135
    68 4kqm:B (2.77) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 24324135
    69 4kqm:C (2.77) BS04 G6P 2.4.1.11 GO:0004373 ... P27472 24324135
    70 4kqm:D (2.77) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 24324135
    71 4qfh:A (1.8) BS01 G6P 5.3.1.9 GO:0004347 ... Q4E5N1 N/A
    72 4qfh:B (1.8) BS01 G6P 5.3.1.9 GO:0004347 ... Q4E5N1 N/A
    73 4r73:A (1.6) BS01 G6P ? GO:0015888 ... A3N294 26295949 MOAD: Kd=23nM
    PDBbind: -logKd/Ki=7.64, Kd=23nM
    74 4r73:B (1.6) BS01 G6P ? GO:0015888 ... A3N294 26295949 MOAD: Kd=23nM
    75 4xxh:A (2.4) BS02 G6P ? GO:0003677 ... P36673 9865945
    76 4xxh:B (2.4) BS02 G6P ? GO:0003677 ... P36673 9865945
    77 4zew:A (1.9) BS02 G6P 3.8.1.- GO:0003824 ... Q8IJ74 26327372
    78 5dx9:A (2.15) BS02 G6P 2.4.1.15 GO:0003824 ... Q059G6 27307435
    79 5huu:A (2.37) BS02 G6P 2.4.1.15 GO:0003824 ... Q92410 28743811
    80 5huu:B (2.37) BS02 G6P 2.4.1.15 GO:0003824 ... Q92410 28743811
    81 5jio:A (1.711) BS02 G6P 2.4.1.347 GO:0000166 ... G7CGT2 31772052
    82 5k44:A (1.925) BS02 G6P 2.4.1.347 GO:0000166 ... G7CGT2 31772052
    83 5oly:A (2.0) BS03 G6P 5.4.2.6 GO:0000287 ... P71447 29619190
    84 5oly:G (2.0) BS02 G6P 5.4.2.6 GO:0000287 ... P71447 29619190
    85 5suk:A (2.88) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 27935293
    86 5suk:A (2.88) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 27935293
    87 5suk:B (2.88) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 27935293
    88 5suk:B (2.88) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 27935293
    89 5suk:C (2.88) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 27935293
    90 5suk:D (2.88) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 27935293
    91 5uw0:A (2.73) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    92 5uw0:B (2.73) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    93 5uw0:C (2.73) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    94 5uw0:D (2.73) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    95 5uw1:A (3.26) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    96 5uw1:B (3.26) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    97 5uw1:C (3.26) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    98 5uw1:D (3.26) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    99 5uw4:A (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    100 5uw4:B (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    101 5uw4:C (2.98) BS03 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    102 5uw4:D (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    103 5ux7:A (2.69) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    104 5ux7:B (2.69) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    105 5ux7:C (2.69) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    106 5ux7:D (2.69) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    107 5v0t:A (1.95) BS02 G6P 2.4.1.15 GO:0000166 ... Q13W28 N/A
    108 5v0t:B (1.95) BS02 G6P 2.4.1.15 GO:0000166 ... Q13W28 N/A
    109 5v0t:C (1.95) BS02 G6P 2.4.1.15 GO:0000166 ... Q13W28 N/A
    110 5v0t:D (1.95) BS02 G6P 2.4.1.15 GO:0000166 ... Q13W28 N/A
    111 5v0t:E (1.95) BS02 G6P 2.4.1.15 GO:0000166 ... Q13W28 N/A
    112 5v0t:F (1.95) BS02 G6P 2.4.1.15 GO:0000166 ... Q13W28 N/A
    113 5v0t:G (1.95) BS02 G6P 2.4.1.15 GO:0000166 ... Q13W28 N/A
    114 5v0t:H (1.95) BS02 G6P 2.4.1.15 GO:0000166 ... Q13W28 N/A
    115 5vnc:A (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    116 5vnc:B (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    117 5vnc:C (2.98) BS03 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    118 5vnc:D (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    119 5wsa:A (2.85) BS01 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    120 5wsa:B (2.85) BS01 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    121 5wsa:C (2.85) BS01 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    122 5wsa:D (2.85) BS01 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    123 5wsb:A (2.25) BS02 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    124 5wsb:B (2.25) BS02 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    125 5wsb:C (2.25) BS02 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    126 5wsb:D (2.25) BS02 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    127 5wsc:A (2.4) BS02 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    128 5wsc:B (2.4) BS02 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    129 5wsc:C (2.4) BS02 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    130 5wsc:D (2.4) BS02 G6P 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    131 6bzc:A (2.05) BS01 G6P 5.3.1.9 GO:0004347 ... A0A077EQ93 N/A
    132 6bzc:B (2.05) BS01 G6P 5.3.1.9 GO:0004347 ... A0A077EQ93 N/A
    133 6jbr:A (2.03) BS02 G6P 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    134 6jbr:B (2.03) BS02 G6P 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    135 6jbr:D (2.03) BS02 G6P 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    136 6jbr:F (2.03) BS02 G6P 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    137 6jbr:H (2.03) BS02 G6P 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    138 6jbr:K (2.03) BS02 G6P 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    139 6jbr:M (2.03) BS02 G6P 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    140 6jbr:O (2.03) BS02 G6P 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    141 6kev:A (2.50614) BS02 G6P 2.7.1.19 GO:0000166 ... Q31PL2 32102842
    142 6lkg:A (1.948) BS01 G6P ? GO:0015888 ... X5DVD1 33199635
    143 6lkg:C (1.948) BS01 G6P ? GO:0015888 ... X5DVD1 33199635
    144 6lkh:A (2.534) BS01 G6P ? GO:0015888 ... X5DVD1 33199635
    145 6lkh:B (2.534) BS01 G6P ? GO:0015888 ... X5DVD1 33199635
    146 6lkk:A (1.502) BS01 G6P ? GO:0015888 ... X5DVD1 33199635
    147 6mgi:A (2.986) BS02 G6P 4.1.1.31 GO:0003824 ... P04711 32459324
    148 6mgi:A (2.986) BS04 G6P 4.1.1.31 GO:0003824 ... P04711 32459324
    149 6mgi:B (2.986) BS01 G6P 4.1.1.31 GO:0003824 ... P04711 32459324
    150 6mgi:B (2.986) BS03 G6P 4.1.1.31 GO:0003824 ... P04711 32459324
    151 6nnp:A (1.5) BS02 G6P N/A GO:0000287 ... N/A 31041362
    152 6nns:A (1.45) BS02 G6P N/A GO:0000287 ... N/A 31041362
    153 6qxl:A (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    154 6qxl:B (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    155 6qxl:C (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    156 6qxl:D (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    157 6qxl:E (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    158 6qxl:F (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    159 6qxl:G (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    160 6qxl:H (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    161 6qxl:I (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    162 6qxl:J (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    163 6qxl:K (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    164 6qxl:L (2.43) BS01 G6P 2.7.1.40 GO:0000287 ... Q9HW72 31484721
    165 6snq:A (2.7) BS02 G6P 5.4.2.2 GO:0000287 ... P36871 32221390
    166 6tdf:A (2.01) BS03 G6P 2.3.1.4 GO:0004343 ... Q4WCU5 32341126
    167 6u77:A (2.85) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 32134266
    168 6u77:B (2.85) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 32134266
    169 6u77:B (2.85) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 32134266
    170 6u77:C (2.85) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 32134266
    171 6u77:D (2.85) BS01 G6P 2.4.1.11 GO:0004373 ... P27472 32134266
    172 6uiq:A (2.3) BS01 G6P 5.4.2.2 GO:0000287 ... P36871 30122451
    173 6uiq:B (2.3) BS01 G6P 5.4.2.2 GO:0000287 ... P36871 30122451
    174 6vc6:A (2.133) BS02 G6P N/A GO:0003824 ... N/A N/A
    175 6vc6:B (2.133) BS02 G6P N/A GO:0003824 ... N/A N/A
    176 6vc6:C (2.133) BS02 G6P N/A GO:0003824 ... N/A N/A
    177 6vc6:D (2.133) BS02 G6P N/A GO:0003824 ... N/A N/A
    178 6wbt:A (2.52) BS02 G6P N/A GO:0003824 ... N/A N/A
    179 6wbt:C (2.52) BS02 G6P N/A GO:0003824 ... N/A N/A
    180 6wbt:D (2.52) BS02 G6P N/A GO:0003824 ... N/A N/A
    181 6yug:A (1.95) BS02 G6P 2.3.1.57 GO:0004145 ... Q5CPU3 33082260
    182 6yug:B (1.95) BS01 G6P 2.3.1.57 GO:0004145 ... Q5CPU3 33082260
    183 7e78:A (2.21) BS01 G6P 5.3.1.9 GO:0004347 ... Q1PBI3 33774822
    184 7e78:C (2.21) BS01 G6P 5.3.1.9 GO:0004347 ... Q1PBI3 33774822
    185 7q0s:A (4.0) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    186 7q0s:B (4.0) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    187 7q0s:C (4.0) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    188 7q0s:D (4.0) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    189 7q12:A (3.7) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    190 7q12:B (3.7) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    191 7q12:C (3.7) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    192 7q12:D (3.7) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    193 7q13:A (3.0) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    194 7q13:A (3.0) BS04 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    195 7q13:B (3.0) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    196 7q13:B (3.0) BS04 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    197 7q13:C (3.0) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    198 7q13:C (3.0) BS02 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    199 7q13:D (3.0) BS01 G6P 2.4.1.11 GO:0004373 ... P13807 35835870
    200 7q13:D (3.0) BS02 G6P 2.4.1.11 GO:0004373 ... P13807 35835870

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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