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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 2uw1:B (1.95) BS02 FE N/A GO:0006631 ... N/A 17463003
    1602 2uw2:A (2.8) BS01 FE 1.17.4.1 GO:0009263 ... P31350 N/A
    1603 2uws:L (2.9) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1604 2uws:M (2.9) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1605 2uwt:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1606 2uwt:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1607 2uwu:L (2.04) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1608 2uwu:M (2.04) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1609 2uwv:L (2.13) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1610 2uwv:M (2.13) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1611 2uww:L (2.05) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1612 2uww:M (2.05) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1613 2ux3:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1614 2ux3:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1615 2ux4:L (2.51) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1616 2ux4:M (2.51) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1617 2ux5:L (2.21) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1618 2ux5:M (2.21) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1619 2uxj:L (2.25) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1620 2uxj:M (2.25) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1621 2uxk:L (2.31) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1622 2uxk:M (2.31) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1623 2uxl:L (2.88) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    1624 2uxl:M (2.88) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    1625 2uxm:L (2.7) BS07 FE ? GO:0009772 ... P0C0Y8 17570397
    1626 2uxm:M (2.7) BS06 FE ? GO:0009772 ... P0C0Y9 17570397
    1627 2v27:A (1.5) BS01 FE 1.14.16.1 GO:0004497 ... Q47XN7 17537732
    1628 2v27:B (1.5) BS01 FE 1.14.16.1 GO:0004497 ... Q47XN7 17537732
    1629 2v3b:B (2.45) BS01 FE ? GO:0005506 ... Q9HTK8 17636129
    1630 2vhl:A (2.05) BS02 FE 3.5.1.25 GO:0005506 ... O34450 14557261
    1631 2vhl:A (2.05) BS03 FE 3.5.1.25 GO:0005506 ... O34450 14557261
    1632 2vhl:B (2.05) BS02 FE 3.5.1.25 GO:0005506 ... O34450 14557261
    1633 2vhl:B (2.05) BS03 FE 3.5.1.25 GO:0005506 ... O34450 14557261
    1634 2vp1:A (2.7) BS01 FE ? N/A Q55835 18252722
    1635 2vp1:B (2.7) BS01 FE ? N/A Q55835 18252722
    1636 2vun:A (1.89) BS02 FE 3.5.2.18 GO:0016787 ... Q0QLE9 18805424
    1637 2vun:B (1.89) BS02 FE 3.5.2.18 GO:0016787 ... Q0QLE9 18805424
    1638 2vun:C (1.89) BS02 FE 3.5.2.18 GO:0016787 ... Q0QLE9 18805424
    1639 2vun:D (1.89) BS02 FE 3.5.2.18 GO:0016787 ... Q0QLE9 18805424
    1640 2vux:A (2.8) BS01 FE 1.17.4.1 GO:0009263 ... Q7LG56 N/A
    1641 2vux:B (2.8) BS01 FE 1.17.4.1 GO:0009263 ... Q7LG56 N/A
    1642 2vzb:A (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    1643 2vzb:A (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    1644 2vzb:B (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    1645 2vzb:B (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    1646 2vzb:C (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    1647 2vzb:C (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    1648 2vzb:D (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    1649 2vzb:D (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    1650 2w7w:A (1.7) BS01 FE 1.15.1.1 GO:0004784 ... B6ENP9 19193992
    1651 2w7w:B (1.7) BS01 FE 1.15.1.1 GO:0004784 ... B6ENP9 19193992
    1652 2w8s:A (2.4) BS02 FE 3.1.-.-
    3.1.3.-
    3.1.4.-
    3.1.6.-
    GO:0005737 ... Q45087 20133613
    1653 2w8s:B (2.4) BS02 FE 3.1.-.-
    3.1.3.-
    3.1.4.-
    3.1.6.-
    GO:0005737 ... Q45087 20133613
    1654 2w8s:C (2.4) BS02 FE 3.1.-.-
    3.1.3.-
    3.1.4.-
    3.1.6.-
    GO:0005737 ... Q45087 20133613
    1655 2w8s:D (2.4) BS02 FE 3.1.-.-
    3.1.3.-
    3.1.4.-
    3.1.6.-
    GO:0005737 ... Q45087 20133613
    1656 2wl3:A (2.2) BS01 FE ? GO:0003824 ... Q6REQ5 20810655
    1657 2wl3:B (2.2) BS01 FE ? GO:0003824 ... Q6REQ5 20810655
    1658 2wl3:C (2.2) BS01 FE ? GO:0003824 ... Q6REQ5 20810655
    1659 2wl3:D (2.2) BS01 FE ? GO:0003824 ... Q6REQ5 20810655
    1660 2wl9:A (1.9) BS01 FE ? GO:0003824 ... Q6REQ5 20810655
    1661 2wl9:B (1.9) BS01 FE ? GO:0003824 ... Q6REQ5 20810655
    1662 2wl9:C (1.9) BS01 FE ? GO:0003824 ... Q6REQ5 20810655
    1663 2wl9:D (1.9) BS01 FE ? GO:0003824 ... Q6REQ5 20810655
    1664 2wlu:A (1.94) BS01 FE 1.16.3.1 GO:0008199 ... Q99YU7 19727858
    1665 2wtl:A (2.59) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1666 2wtl:A (2.59) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1667 2wtl:B (2.59) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1668 2wtl:B (2.59) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1669 2wtl:C (2.59) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1670 2wtl:C (2.59) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1671 2wtl:D (2.59) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1672 2wtl:D (2.59) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1673 2wtl:E (2.59) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1674 2wtl:E (2.59) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1675 2wtl:F (2.59) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1676 2wtl:F (2.59) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376
    1677 2wx5:L (2.63) BS05 FE ? GO:0009772 ... Q3J1A5 20112981
    1678 2wx5:M (2.63) BS05 FE ? GO:0009772 ... Q3J1A6 20112981
    1679 2xmo:A (1.7) BS02 FE ? GO:0016787 ... Q8Y432 21246635
    1680 2xmo:B (1.7) BS02 FE ? GO:0016787 ... Q8Y432 21246635
    1681 2xsr:A (1.8) BS01 FE 1.13.11.1 GO:0003824 ... Q9F103 20869471
    1682 2xsu:A (1.6) BS01 FE 1.13.11.1 GO:0003824 ... Q9F103 20869471
    1683 2xsv:A (1.8) BS01 FE 1.13.11.1 GO:0003824 ... Q9F103 20869471
    1684 2xue:A (2.0) BS02 FE 1.14.11.68 N/A O15054 22842901
    1685 2xue:B (2.0) BS02 FE 1.14.11.68 N/A O15054 22842901
    1686 2xz0:A (3.0) BS01 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1687 2xz0:A (3.0) BS02 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1688 2xz0:B (3.0) BS01 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1689 2xz0:B (3.0) BS02 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1690 2xz0:C (3.0) BS01 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1691 2xz0:C (3.0) BS02 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1692 2xz1:A (3.35) BS01 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1693 2xz1:A (3.35) BS02 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1694 2xz1:B (3.35) BS01 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1695 2xz1:B (3.35) BS02 FE 1.14.19.2 GO:0005515 ... P22337 21930947
    1696 2y60:A (1.4) BS02 FE 1.21.3.1 GO:0005506 ... P05326 22001738
    1697 2y6f:A (1.79) BS02 FE 1.21.3.1 GO:0005506 ... P05326 21678539
    1698 2yav:A (1.701) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1699 2yav:B (1.701) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1700 2yav:C (1.701) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1701 2yav:D (1.701) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1702 2yav:E (1.701) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1703 2yav:F (1.701) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1704 2yaw:A (2.499) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1705 2yaw:B (2.499) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1706 2yaw:C (2.499) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1707 2yaw:D (2.499) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1708 2yaw:E (2.499) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1709 2yaw:F (2.499) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1710 2yax:A (1.8) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1711 2yax:B (1.8) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1712 2yax:C (1.8) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1713 2yax:D (1.8) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1714 2yax:E (1.8) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1715 2yax:F (1.8) BS01 FE 1.13.11.55 GO:0005737 ... P29082 21747782
    1716 2yde:A (2.28) BS01 FE 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 21460794
    1717 2yeq:A (1.93) BS01 FE 3.1.3.1 GO:0004035 ... P42251 25217636
    1718 2yeq:B (1.93) BS01 FE 3.1.3.1 GO:0004035 ... P42251 25217636
    1719 2yiv:X (1.28) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 21904889
    1720 2yjj:A (2.05) BS01 FE ? GO:0008199 ... Q1X6M4 21768097
    1721 2yjj:L (2.05) BS02 FE ? GO:0008199 ... Q1X6M4 21768097
    1722 2yjk:H (2.0) BS02 FE ? GO:0008199 ... Q1X6M4 21768097
    1723 2yxo:A (1.6) BS03 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1724 2yxo:A (1.6) BS04 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1725 2yxo:B (1.6) BS03 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1726 2yxo:B (1.6) BS04 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1727 2yz5:A (2.1) BS02 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1728 2yz5:A (2.1) BS03 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1729 2yz5:B (2.1) BS01 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1730 2yz5:B (2.1) BS03 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1731 2z36:A (2.8) BS01 FE 1.-.-.- GO:0004497 ... Q2L6S8 17679139
    1732 2z36:B (2.8) BS01 FE 1.-.-.- GO:0004497 ... Q2L6S8 17679139
    1733 2z4g:A (1.8) BS02 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1734 2z4g:A (1.8) BS03 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1735 2z4g:B (1.8) BS02 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1736 2z4g:B (1.8) BS03 FE 3.1.3.15 GO:0000105 ... Q5SLG2 17929834
    1737 2zcf:A (1.43) BS01 FE 4.2.1.84 GO:0003824 ... P13448 16636455
    1738 2zmb:A (2.9) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1739 2zpb:A (1.3) BS01 FE 4.2.1.84 GO:0003824 ... P13448 18948265
    1740 2zpe:A (1.48) BS01 FE 4.2.1.84 GO:0003824 ... P13448 18948265
    1741 2zpf:A (1.482) BS01 FE 4.2.1.84 GO:0003824 ... P13448 18948265
    1742 2zpg:A (1.39) BS01 FE 4.2.1.84 GO:0003824 ... P13448 18948265
    1743 2zph:A (1.59) BS01 FE 4.2.1.84 GO:0003824 ... P13448 18948265
    1744 2zpi:A (1.491) BS01 FE 4.2.1.84 GO:0003824 ... P13448 18948265
    1745 2zzi:A (2.8) BS01 FE ? GO:0046872 ... Q5SHV7 19407375
    1746 2zzi:A (2.8) BS02 FE ? GO:0046872 ... Q5SHV7 19407375
    1747 2zzi:B (2.8) BS01 FE ? GO:0046872 ... Q5SHV7 19407375
    1748 2zzi:B (2.8) BS02 FE ? GO:0046872 ... Q5SHV7 19407375
    1749 3a8g:A (1.11) BS01 FE 4.2.1.84 GO:0003824 ... P13448 20221653
    1750 3a8h:A (1.66) BS01 FE 4.2.1.84 GO:0003824 ... P13448 20221653
    1751 3a8l:A (1.63) BS01 FE 4.2.1.84 GO:0003824 ... P13448 20221653
    1752 3a8m:A (1.32) BS01 FE 4.2.1.84 GO:0003824 ... P13448 20221653
    1753 3a8o:A (1.47) BS01 FE 4.2.1.84 GO:0003824 ... P13448 20221653
    1754 3aal:A (1.6) BS01 FE 3.1.21.2 GO:0003677 ... Q5KX27 21358045
    1755 3aal:A (1.6) BS02 FE 3.1.21.2 GO:0003677 ... Q5KX27 21358045
    1756 3ak3:A (1.48) BS01 FE 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    1757 3ak3:B (1.48) BS01 FE 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    1758 3ak3:C (1.48) BS02 FE 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    1759 3ak3:D (1.48) BS01 FE 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    1760 3bnb:A (1.45) BS01 FE 1.13.11.12 GO:0005506 ... P08170 18216254
    1761 3bnc:A (1.65) BS01 FE 1.13.11.12 GO:0005506 ... P08170 18216254
    1762 3bnd:A (1.6) BS01 FE 1.13.11.12 GO:0005506 ... P08170 18216254
    1763 3bne:A (1.4) BS01 FE 1.13.11.12 GO:0005506 ... P08170 18216254
    1764 3bv6:A (1.8) BS01 FE ? GO:0003674 ... Q9KMS2 N/A
    1765 3bv6:A (1.8) BS02 FE ? GO:0003674 ... Q9KMS2 N/A
    1766 3bv6:B (1.8) BS01 FE ? GO:0003674 ... Q9KMS2 N/A
    1767 3bv6:B (1.8) BS02 FE ? GO:0003674 ... Q9KMS2 N/A
    1768 3bv6:C (1.8) BS01 FE ? GO:0003674 ... Q9KMS2 N/A
    1769 3bv6:C (1.8) BS02 FE ? GO:0003674 ... Q9KMS2 N/A
    1770 3bv6:D (1.8) BS01 FE ? GO:0003674 ... Q9KMS2 N/A
    1771 3bv6:D (1.8) BS02 FE ? GO:0003674 ... Q9KMS2 N/A
    1772 3bv6:E (1.8) BS01 FE ? GO:0003674 ... Q9KMS2 N/A
    1773 3bv6:E (1.8) BS02 FE ? GO:0003674 ... Q9KMS2 N/A
    1774 3bv6:F (1.8) BS01 FE ? GO:0003674 ... Q9KMS2 N/A
    1775 3bv6:F (1.8) BS02 FE ? GO:0003674 ... Q9KMS2 N/A
    1776 3bvf:A (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1777 3bvf:A (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1778 3bvf:B (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1779 3bvf:B (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1780 3bvf:C (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1781 3bvf:C (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1782 3bvf:D (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1783 3bvf:D (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1784 3bvf:E (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1785 3bvf:E (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1786 3bvf:F (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1787 3bvf:F (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1788 3bvi:A (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1789 3bvi:A (2.0) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1790 3bvi:B (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1791 3bvi:B (2.0) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1792 3bvi:C (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1793 3bvi:C (2.0) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1794 3bvi:D (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1795 3bvi:D (2.0) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1796 3bvi:E (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1797 3bvi:E (2.0) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1798 3bvi:F (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1799 3bvi:F (2.0) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1800 3bvk:A (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218