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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 3sdp:A (2.1) BS01 FE 1.15.1.1 GO:0004784 ... P09223 2271564
    2602 3sdp:B (2.1) BS01 FE 1.15.1.1 GO:0004784 ... P09223 2271564
    2603 3sid:A (1.4) BS01 FE ? GO:0008199 ... P48329 21872605
    2604 3sid:A (1.4) BS02 FE ? GO:0008199 ... P48329 21872605
    2605 3sid:B (1.4) BS01 FE ? GO:0008199 ... P48329 21872605
    2606 3sid:B (1.4) BS02 FE ? GO:0008199 ... P48329 21872605
    2607 3ss2:A (1.75) BS01 FE ? GO:0009055 ... P24297 22194331
    2608 3swt:A (2.05) BS01 FE ? GO:0005737 ... B2HD26 25613812
    2609 3swt:B (2.05) BS01 FE ? GO:0005737 ... B2HD26 25613812
    2610 3t3y:A (2.001) BS01 FE 1.14.11.33 GO:0005515 ... P05050 22263962
    2611 3t4h:B (1.65) BS01 FE 1.14.11.33 GO:0005515 ... P05050 22263962
    2612 3t4v:A (1.732) BS01 FE 1.14.11.33 GO:0005515 ... P05050 22263962
    2613 3t63:M (1.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 N/A
    2614 3t63:N (1.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 N/A
    2615 3t63:O (1.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 N/A
    2616 3t67:M (1.67) BS01 FE 1.13.11.3 GO:0003824 ... P00437 N/A
    2617 3t67:N (1.67) BS01 FE 1.13.11.3 GO:0003824 ... P00437 N/A
    2618 3t67:O (1.67) BS01 FE 1.13.11.3 GO:0003824 ... P00437 N/A
    2619 3t81:A (2.63) BS01 FE 3.5.4.2 GO:0000034 ... Q7CUX4 N/A
    2620 3t81:A (2.63) BS02 FE 3.5.4.2 GO:0000034 ... Q7CUX4 N/A
    2621 3t81:A (2.63) BS03 FE 3.5.4.2 GO:0000034 ... Q7CUX4 N/A
    2622 3t81:B (2.63) BS01 FE 3.5.4.2 GO:0000034 ... Q7CUX4 N/A
    2623 3t81:B (2.63) BS02 FE 3.5.4.2 GO:0000034 ... Q7CUX4 N/A
    2624 3t81:B (2.63) BS03 FE 3.5.4.2 GO:0000034 ... Q7CUX4 N/A
    2625 3taj:A (1.7) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2626 3th1:A (3.4) BS01 FE 1.13.11.- GO:0003824 ... P11451 N/A
    2627 3th1:B (3.4) BS01 FE 1.13.11.- GO:0003824 ... P11451 N/A
    2628 3th1:C (3.4) BS01 FE 1.13.11.- GO:0003824 ... P11451 N/A
    2629 3tjt:A (1.801) BS01 FE 1.15.1.1 GO:0004784 ... Q186I6 N/A
    2630 3tm8:A (1.28) BS02 FE ? GO:0046872 ... Q6MM30 21990613
    2631 3tm8:A (1.28) BS03 FE ? GO:0046872 ... Q6MM30 21990613
    2632 3tm8:B (1.28) BS02 FE ? GO:0046872 ... Q6MM30 21990613
    2633 3tm8:B (1.28) BS03 FE ? GO:0046872 ... Q6MM30 21990613
    2634 3tmb:A (1.7) BS01 FE ? GO:0046872 ... Q6MM30 21990613
    2635 3tmb:A (1.7) BS02 FE ? GO:0046872 ... Q6MM30 21990613
    2636 3tmb:B (1.7) BS01 FE ? GO:0046872 ... Q6MM30 21990613
    2637 3tmb:B (1.7) BS02 FE ? GO:0046872 ... Q6MM30 21990613
    2638 3tmc:A (1.55) BS01 FE ? GO:0046872 ... Q6MM30 21990613
    2639 3tmc:A (1.55) BS02 FE ? GO:0046872 ... Q6MM30 21990613
    2640 3tmc:B (1.55) BS01 FE ? GO:0046872 ... Q6MM30 21990613
    2641 3tmc:B (1.55) BS02 FE ? GO:0046872 ... Q6MM30 21990613
    2642 3tmd:A (2.641) BS01 FE ? GO:0046872 ... Q6MM30 21990613
    2643 3tmd:A (2.641) BS02 FE ? GO:0046872 ... Q6MM30 21990613
    2644 3tod:A (1.38) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2645 3ttr:A (2.27) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2646 3tus:A (2.5) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2647 3u52:A (1.95) BS01 FE ? GO:0016491 ... Q84AQ2 22136180
    2648 3u52:A (1.95) BS02 FE ? GO:0016491 ... Q84AQ2 22136180
    2649 3u52:B (1.95) BS01 FE ? GO:0016491 ... Q84AQ2 22136180
    2650 3u52:B (1.95) BS02 FE ? GO:0016491 ... Q84AQ2 22136180
    2651 3u72:A (2.2) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2652 3u8q:A (1.97) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2653 3u9j:A (1.603) BS01 FE ? GO:0006879 ... Q9UKA1 22492618
    2654 3u9j:A (1.603) BS02 FE ? GO:0006879 ... Q9UKA1 22492618
    2655 3u9j:B (1.603) BS01 FE ? GO:0006879 ... Q9UKA1 22492618
    2656 3u9j:B (1.603) BS02 FE ? GO:0006879 ... Q9UKA1 22492618
    2657 3u9m:A (1.95) BS01 FE ? GO:0006879 ... Q9UKA1 22492618
    2658 3u9m:A (1.95) BS02 FE ? GO:0006879 ... Q9UKA1 22492618
    2659 3u9m:C (1.95) BS01 FE ? GO:0006879 ... Q9UKA1 22492618
    2660 3u9m:C (1.95) BS02 FE ? GO:0006879 ... Q9UKA1 22492618
    2661 3u9m:E (1.95) BS01 FE ? GO:0006879 ... Q9UKA1 22492618
    2662 3u9m:E (1.95) BS02 FE ? GO:0006879 ... Q9UKA1 22492618
    2663 3u9m:G (1.95) BS01 FE ? GO:0006879 ... Q9UKA1 22492618
    2664 3u9m:G (1.95) BS02 FE ? GO:0006879 ... Q9UKA1 22492618
    2665 3ugw:A (1.87) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2666 3uk4:A (1.98) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2667 3uof:A (2.902) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2668 3uof:A (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2669 3uof:B (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2670 3uof:B (2.902) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2671 3uof:C (2.902) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2672 3uof:C (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2673 3uof:D (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2674 3uof:D (2.902) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2675 3uof:E (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2676 3uof:E (2.902) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2677 3uof:F (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2678 3uof:F (2.902) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2679 3usd:A (2.4) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2680 3uus:E (5.65) BS01 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    2681 3uus:E (5.65) BS02 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    2682 3uus:F (5.65) BS01 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    2683 3uus:F (5.65) BS02 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    2684 3uus:G (5.65) BS01 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    2685 3uus:G (5.65) BS02 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    2686 3uus:H (5.65) BS01 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    2687 3uus:H (5.65) BS02 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    2688 3v3y:L (2.8) BS07 FE ? GO:0009772 ... P0C0Y8 22365928
    2689 3v3y:M (2.8) BS06 FE ? GO:0009772 ... P0C0Y9 22365928
    2690 3v3z:L (2.9) BS07 FE ? GO:0009772 ... P0C0Y8 22365928
    2691 3v3z:M (2.9) BS06 FE ? GO:0009772 ... P0C0Y9 22365928
    2692 3v5a:A (1.44) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2693 3v7p:A (1.35) BS01 FE 3.5.4.40 GO:0009234 ... A6Q234 N/A
    2694 3v83:A (2.102) BS03 FE ? GO:0005576 ... P02787 22327295
    2695 3v83:A (2.102) BS04 FE ? GO:0005576 ... P02787 22327295
    2696 3v83:B (2.102) BS03 FE ? GO:0005576 ... P02787 22327295
    2697 3v83:B (2.102) BS04 FE ? GO:0005576 ... P02787 22327295
    2698 3v83:C (2.102) BS03 FE ? GO:0005576 ... P02787 22327295
    2699 3v83:C (2.102) BS04 FE ? GO:0005576 ... P02787 22327295
    2700 3v83:D (2.102) BS03 FE ? GO:0005576 ... P02787 22327295
    2701 3v83:D (2.102) BS04 FE ? GO:0005576 ... P02787 22327295
    2702 3v83:E (2.102) BS03 FE ? GO:0005576 ... P02787 22327295
    2703 3v83:E (2.102) BS04 FE ? GO:0005576 ... P02787 22327295
    2704 3v83:F (2.102) BS03 FE ? GO:0005576 ... P02787 22327295
    2705 3v83:F (2.102) BS04 FE ? GO:0005576 ... P02787 22327295
    2706 3vca:A (1.59) BS02 FE ? GO:0005506 ... Q92ZP9 22224443
    2707 3vcp:A (2.2) BS02 FE ? GO:0005506 ... Q92ZP9 22224443
    2708 3vdf:A (1.46) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2709 3ve1:B (2.956) BS02 FE ? GO:0005515 ... P02787 22343719
    2710 3ve1:D (2.956) BS02 FE ? GO:0005515 ... P02787 22343719
    2711 3vpm:A (2.7) BS02 FE 1.17.4.1 GO:0009263 ... P31350 N/A
    2712 3vpm:B (2.7) BS02 FE 1.17.4.1 GO:0009263 ... P31350 N/A
    2713 3vpn:A (2.25) BS01 FE 1.17.4.1 GO:0009263 ... P31350 N/A
    2714 3vpn:B (2.25) BS01 FE 1.17.4.1 GO:0009263 ... P31350 N/A
    2715 3vpo:A (2.3) BS02 FE 1.17.4.1 GO:0009263 ... P31350 N/A
    2716 3vpo:B (2.3) BS02 FE 1.17.4.1 GO:0009263 ... P31350 N/A
    2717 3vsi:B (2.5) BS01 FE 1.13.11.74
    1.13.11.76    		 GO:0008198 ... Q6J1Z6 23275161
    2718 3vsi:D (2.5) BS01 FE 1.13.11.74
    1.13.11.76    		 GO:0008198 ... Q6J1Z6 23275161
    2719 3vth:A (2.0) BS05 FE 3.6.1.7
    6.2.-.-    		 GO:0003725 ... Q8RDB0 22740694
    2720 3vth:B (2.0) BS05 FE 3.6.1.7
    6.2.-.-    		 GO:0003725 ... Q8RDB0 22740694
    2721 3vti:A (2.56) BS03 FE 3.6.1.7
    6.2.-.-    		 GO:0003725 ... Q8RDB0 22740694
    2722 3vti:B (2.56) BS03 FE 3.6.1.7
    6.2.-.-    		 GO:0003725 ... Q8RDB0 22740694
    2723 3vto:A (1.44) BS01 FE ? N/A Q9T1V4 22922659
    2724 3vto:B (1.44) BS01 FE ? N/A Q9T1V4 22922659
    2725 3vto:C (1.44) BS01 FE ? N/A Q9T1V4 22922659
    2726 3vto:P (1.44) BS01 FE ? N/A Q9T1V4 22922659
    2727 3vto:Q (1.44) BS01 FE ? N/A Q9T1V4 22922659
    2728 3vto:R (1.44) BS01 FE ? N/A Q9T1V4 22922659
    2729 3vv9:A (2.85) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2730 3vv9:A (2.85) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2731 3vv9:B (2.85) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2732 3vv9:B (2.85) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2733 3vv9:C (2.85) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2734 3vv9:C (2.85) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2735 3vv9:D (2.85) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2736 3vv9:D (2.85) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2737 3vva:A (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2738 3vva:A (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2739 3vva:B (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2740 3vva:B (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2741 3vva:C (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2742 3vva:C (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2743 3vva:D (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2744 3vva:D (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2745 3w54:A (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2746 3w54:A (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2747 3w54:B (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2748 3w54:B (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2749 3w54:C (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2750 3w54:C (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2751 3w54:D (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2752 3w54:D (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    2753 3wae:A (1.7) BS01 FE ? N/A Q5SHV2 24419392
    2754 3wae:B (1.7) BS01 FE ? N/A Q5SHV2 24419392
    2755 3wfb:B (2.7) BS03 FE 1.7.2.5 GO:0004129 ... Q59647 24338896
    2756 3wfc:B (2.5) BS03 FE 1.7.2.5 GO:0004129 ... Q59647 24338896
    2757 3wfd:B (2.3) BS03 FE 1.7.2.5 GO:0004129 ... Q59647 24338896
    2758 3wfe:B (2.49) BS03 FE 1.7.2.5 GO:0004129 ... Q59647 24338896
    2759 3wku:A (2.7) BS01 FE 1.13.11.58 GO:0008198 ... G2IKE5 24657997
    2760 3wku:B (2.7) BS02 FE 1.13.11.58 GO:0008198 ... G2IKE5 24657997
    2761 3wmm:L (3.008) BS07 FE ? GO:0005515 ... D2Z0P3 24670637
    2762 3wmm:M (3.008) BS06 FE ? GO:0005515 ... A8ASG6 24670637
    2763 3wpm:A (2.5) BS01 FE 1.13.11.- GO:0008198 ... G2IKE5 24657997
    2764 3wpm:B (2.5) BS01 FE 1.13.11.- GO:0008198 ... G2IKE5 24657997
    2765 3wr4:A (2.4) BS01 FE 1.13.11.- GO:0008198 ... G2IKE5 24657997
    2766 3wr4:B (2.4) BS01 FE 1.13.11.- GO:0008198 ... G2IKE5 24657997
    2767 3wsd:A (2.5) BS01 FE N/A N/A N/A 24931373
    2768 3wsd:A (2.5) BS02 FE N/A N/A N/A 24931373
    2769 3wsd:B (2.5) BS01 FE N/A N/A N/A 24931373
    2770 3wsd:B (2.5) BS02 FE N/A N/A N/A 24931373
    2771 3wsd:C (2.5) BS01 FE N/A N/A N/A 24931373
    2772 3wsd:C (2.5) BS02 FE N/A N/A N/A 24931373
    2773 3wsd:D (2.5) BS01 FE N/A N/A N/A 24931373
    2774 3wsd:D (2.5) BS02 FE N/A N/A N/A 24931373
    2775 3wsd:E (2.5) BS01 FE N/A N/A N/A 24931373
    2776 3wsd:E (2.5) BS02 FE N/A N/A N/A 24931373
    2777 3wsd:F (2.5) BS01 FE N/A N/A N/A 24931373
    2778 3wsd:F (2.5) BS02 FE N/A N/A N/A 24931373
    2779 3wsf:A (2.0) BS01 FE N/A N/A N/A 24931373
    2780 3wsf:B (2.0) BS01 FE N/A N/A N/A 24931373
    2781 3wsf:C (2.0) BS01 FE N/A N/A N/A 24931373
    2782 3wsf:D (2.0) BS01 FE N/A N/A N/A 24931373
    2783 3wsf:E (2.0) BS01 FE N/A N/A N/A 24931373
    2784 3wsf:F (2.0) BS01 FE N/A N/A N/A 24931373
    2785 3wsh:A (2.8) BS01 FE N/A N/A N/A 24931373
    2786 3wsh:B (2.8) BS01 FE N/A N/A N/A 24931373
    2787 3wsh:C (2.8) BS01 FE N/A N/A N/A 24931373
    2788 3wsh:D (2.8) BS01 FE N/A N/A N/A 24931373
    2789 3wsh:E (2.8) BS01 FE N/A N/A N/A 24931373
    2790 3wsh:F (2.8) BS01 FE N/A N/A N/A 24931373
    2791 3wsh:G (2.8) BS01 FE N/A N/A N/A 24931373
    2792 3wsh:H (2.8) BS01 FE N/A N/A N/A 24931373
    2793 3wsh:I (2.8) BS01 FE N/A N/A N/A 24931373
    2794 3wsh:J (2.8) BS01 FE N/A N/A N/A 24931373
    2795 3wsh:K (2.8) BS01 FE N/A N/A N/A 24931373
    2796 3wsh:L (2.8) BS01 FE N/A N/A N/A 24931373
    2797 3wvd:A (1.18) BS01 FE 4.2.1.84 GO:0003824 ... P13448 26333053
    2798 3wve:A (1.57) BS01 FE 4.2.1.84 GO:0003824 ... P13448 26333053
    2799 3x20:A (1.18) BS01 FE 4.2.1.84 GO:0003824 ... P13448 26333053
    2800 3x24:A (1.24) BS01 FE 4.2.1.84 GO:0003824 ... P13448 26333053
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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