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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 194 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cc1:L (2.15) BS04 FCO 1.12.99.6 GO:0008901 ... P13065 10378275
    2 1yq9:H (2.35) BS03 FCO 1.12.2.1 GO:0008901 ... P12944 15803334
    3 1yq9:I (2.35) BS03 FCO 1.12.2.1 GO:0008901 ... P12944 15803334
    4 1yqw:Q (1.83) BS04 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    5 1yqw:R (1.83) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    6 1yqw:S (1.83) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    7 1yrq:H (2.1) BS04 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    8 1yrq:I (2.1) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    9 1yrq:J (2.1) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    10 1yrq:K (2.1) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    11 1yrq:M (2.1) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    12 1yrq:N (2.1) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 15803334
    13 2frv:B (2.54) BS03 FCO 1.12.2.1 GO:0008901 ... P12944 N/A
    14 2frv:D (2.54) BS03 FCO 1.12.2.1 GO:0008901 ... P12944 N/A
    15 2frv:F (2.54) BS03 FCO 1.12.2.1 GO:0008901 ... P12944 N/A
    16 2frv:H (2.54) BS03 FCO 1.12.2.1 GO:0008901 ... P12944 N/A
    17 2frv:J (2.54) BS03 FCO 1.12.2.1 GO:0008901 ... P12944 N/A
    18 2frv:L (2.54) BS03 FCO 1.12.2.1 GO:0008901 ... P12944 N/A
    19 2wpn:B (2.04) BS01 FCO 1.12.7.2 GO:0005515 ... Q72AS3 20026074
    20 3cur:H (2.4) BS04 FCO 1.12.2.1 GO:0008901 ... P18188 18685111
    21 3cur:I (2.4) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 18685111
    22 3cur:J (2.4) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 18685111
    23 3cus:Q (2.2) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 18685111
    24 3cus:R (2.2) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 18685111
    25 3cus:S (2.2) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 18685111
    26 3h3x:Q (2.7) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 19580279
    27 3h3x:R (2.7) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 19580279
    28 3h3x:S (2.7) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 19580279
    29 3uqy:L (1.47) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 22431599
    30 3uqy:M (1.47) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 22431599
    31 3usc:L (2.0) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 22431599
    32 3usc:M (2.0) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 22431599
    33 3use:L (1.67) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 22431599
    34 3use:M (1.67) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 22431599
    35 3ze6:B (1.5) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    36 3ze7:B (1.95) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    37 3ze8:B (1.801) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    38 3ze9:B (1.33) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    39 3zea:B (1.82) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    40 4gd3:J (3.3) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 23260654
    41 4gd3:K (3.3) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 23260654
    42 4gd3:L (3.3) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 23260654
    43 4gd3:M (3.3) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 23260654
    44 4kl8:L (1.52) BS02 FCO 1.12.99.6 GO:0008901 ... C7LN88 23811828
    45 4kl8:M (1.52) BS02 FCO 1.12.99.6 GO:0008901 ... C7LN88 23811828
    46 4kn9:L (1.4) BS02 FCO 1.12.99.6 GO:0008901 ... C7LN88 23811828
    47 4kn9:M (1.4) BS02 FCO 1.12.99.6 GO:0008901 ... C7LN88 23811828
    48 4ko1:L (1.55) BS02 FCO 1.18.99.1 GO:0008901 ... C7LN88 23811828
    49 4ko1:M (1.55) BS02 FCO 1.18.99.1 GO:0008901 ... C7LN88 23811828
    50 4ko2:L (1.6) BS02 FCO 1.18.99.1 GO:0008901 ... C7LN88 23811828
    51 4ko2:M (1.6) BS02 FCO 1.18.99.1 GO:0008901 ... C7LN88 23811828
    52 4ko3:L (1.7) BS02 FCO 1.18.99.1 GO:0008901 ... C7LN88 23811828
    53 4ko3:M (1.7) BS02 FCO 1.18.99.1 GO:0008901 ... C7LN88 23811828
    54 4ko4:L (2.0) BS02 FCO 1.18.99.1 GO:0008901 ... C7LN88 23811828
    55 4ko4:M (2.0) BS02 FCO 1.18.99.1 GO:0008901 ... C7LN88 23811828
    56 4ucq:Q (2.6) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    57 4ucq:R (2.6) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    58 4ucq:S (2.6) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    59 4ucw:Q (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    60 4ucw:R (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    61 4ucw:S (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    62 4ucx:Q (1.95) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    63 4ucx:R (1.95) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    64 4ucx:S (1.95) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    65 4ud2:Q (2.3) BS01 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    66 4ud2:R (2.3) BS01 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    67 4ud2:S (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    68 4ud6:Q (2.12) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    69 4ud6:R (2.12) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    70 4ud6:S (2.12) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    71 4ue2:Q (2.02) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    72 4ue2:R (2.02) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    73 4ue2:S (2.02) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    74 4ue3:LLL (1.4) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    75 4ue3:MMM (1.4) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    76 4ue6:Q (2.3) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    77 4ue6:R (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    78 4ue6:S (2.3) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    79 4ueq:Q (1.7) BS03 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    80 4ueq:R (1.7) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    81 4ueq:S (1.7) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    82 4ueq:T (1.7) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    83 4ueq:U (1.7) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    84 4ueq:V (1.7) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    85 4uew:Q (2.08) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    86 4uew:R (2.08) BS02 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    87 4uew:S (2.08) BS03 FCO 1.12.2.1 GO:0008901 ... E1K247 25780984
    88 4upe:Q (1.8) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    89 4upe:R (1.8) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    90 4upe:S (1.8) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    91 4upv:Q (1.52) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    92 4upv:R (1.52) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    93 4uql:Q (1.22) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    94 4uql:R (1.22) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    95 4uqp:Q (1.42) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    96 4uqp:R (1.42) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    97 4urh:Q (1.44) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    98 4urh:R (1.44) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    99 4urh:S (1.44) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25315838
    100 5a4f:L (1.25) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    101 5a4f:M (1.25) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    102 5a4i:L (1.23) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    103 5a4i:M (1.23) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    104 5adu:L (1.1) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    105 5adu:M (1.1) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    106 5jrd:L (1.2) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 28001048
    107 5jrd:M (1.2) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 28001048
    108 5jsh:B (1.3) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    109 5jsk:B (0.95) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    110 5jsu:B (1.4) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    111 5jsy:B (1.04) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    112 5jt1:B (1.35) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    113 5lmm:L (1.2) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 N/A
    114 5lmm:M (1.2) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 N/A
    115 5lry:L (1.4) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    116 5lry:M (1.4) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    117 5xf9:D (2.58) BS02 FCO ? GO:0008901 ... A0A077LAI5 28860386
    118 5xf9:H (2.58) BS02 FCO ? GO:0008901 ... A0A077LAI5 28860386
    119 5xfa:D (2.7) BS01 FCO ? GO:0008901 ... A0A077LAI5 28860386
    120 5xfa:H (2.7) BS01 FCO ? GO:0008901 ... A0A077LAI5 28860386
    121 5y34:A (1.32) BS01 FCO 1.12.5.1 GO:0005886 ... F2Z6J6 22002607
    122 5y34:C (1.32) BS02 FCO 1.12.5.1 GO:0005886 ... F2Z6J6 22002607
    123 6ehq:L (2.2) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    124 6ehq:M (2.2) BS02 FCO 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    125 6ehs:L (1.5) BS03 FCO 1.12.99.6 GO:0005886 ... P0ACE1 29555844
    126 6ehs:M (1.5) BS03 FCO 1.12.99.6 GO:0005886 ... P0ACE1 29555844
    127 6en9:L (1.5) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    128 6en9:M (1.5) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    129 6fpo:L (1.05) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    130 6fpo:M (1.05) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    131 6g7m:L (1.71) BS02 FCO 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    132 6g7m:M (1.71) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    133 6g94:J (2.5) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 29888350
    134 6g94:K (2.5) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 29888350
    135 6g94:L (2.5) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 29888350
    136 6g94:M (2.5) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 29888350
    137 6gam:L (1.4) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    138 6gam:M (1.4) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    139 6gan:L (1.6) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    140 6gan:M (1.6) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    141 6rp2:L (1.35) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 32579353
    142 6rp2:M (1.35) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 32579353
    143 6rtp:B (1.1) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    144 6ru9:B (1.355) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    145 6ruc:B (1.199) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    146 6syo:LLL (1.25) BS02 FCO 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    147 6syo:MMM (1.25) BS02 FCO 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    148 6syx:LLL (1.3) BS02 FCO N/A GO:0008901 ... N/A N/A
    149 6syx:MMM (1.3) BS02 FCO N/A GO:0008901 ... N/A N/A
    150 6szd:LLL (1.5) BS03 FCO N/A GO:0008901 ... N/A N/A
    151 6szd:MMM (1.5) BS03 FCO N/A GO:0008901 ... N/A N/A
    152 6szk:LLL (1.2) BS02 FCO N/A GO:0008901 ... N/A N/A
    153 6szk:MMM (1.2) BS02 FCO N/A GO:0008901 ... N/A N/A
    154 6z7r:B (1.77) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    155 6z7r:D (1.77) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    156 6z8j:B (1.09) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    157 6z8j:D (1.09) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    158 6z8m:B (1.02) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    159 6z8o:B (2.2) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    160 6z8o:D (2.2) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    161 6z9g:B (1.76) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    162 6z9g:D (1.76) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    163 6z9g:F (1.76) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    164 6z9g:H (1.76) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    165 6z9o:B (1.53) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    166 6za1:B (1.37) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    167 7nem:L (1.35) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    168 7nem:M (1.35) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    169 7t2r:D (3.2) BS01 FCO ? GO:0008901 ... I4BYB2 35213221
    170 7t2r:I (3.2) BS01 FCO ? GO:0008901 ... I4BYB2 35213221
    171 7t30:D (3.0) BS01 FCO ? GO:0008901 ... I4BYB2 35213221
    172 7t30:I (3.0) BS01 FCO ? GO:0008901 ... I4BYB2 35213221
    173 7utd:A (2.19) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    174 7utd:C (2.19) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    175 7utd:E (2.19) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    176 7utd:G (2.19) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    177 7utd:I (2.19) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    178 7utd:K (2.19) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    179 7utd:M (2.19) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    180 7utd:O (2.19) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    181 7uur:C (1.67) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    182 7uur:F (1.67) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    183 7uus:A (8.0) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    184 7uus:C (8.0) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    185 7uus:E (8.0) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    186 7uus:G (8.0) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    187 7uus:I (8.0) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    188 7uus:K (8.0) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    189 7uus:M (8.0) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    190 7uus:O (8.0) BS01 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    191 7z0s:E (2.6) BS01 FCO ? GO:0008137 ... P16431 36104349
    192 7z0t:E (3.4) BS01 FCO ? GO:0008137 ... P16431 36104349
    193 8dqv:A (1.52) BS03 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    194 8dqv:C (1.52) BS03 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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