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BioLiP Library
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jay:A (1.65) BS02 F42 1.5.1.40 GO:0000166 ... O29370 11726492
    2 1jay:B (1.65) BS02 F42 1.5.1.40 GO:0000166 ... O29370 11726492
    3 1rhc:A (1.8) BS01 F42 1.1.99.- GO:0016705 ... O93734 15016352
    4 1z69:A (2.61) BS01 F42 1.5.98.2 GO:0005737 ... Q46FV4 15937276
    5 1z69:B (2.61) BS01 F42 1.5.98.2 GO:0005737 ... Q46FV4 15937276
    6 1z69:C (2.61) BS01 F42 1.5.98.2 GO:0005737 ... Q46FV4 15937276
    7 1z69:D (2.61) BS01 F42 1.5.98.2 GO:0005737 ... Q46FV4 15937276
    8 3b4y:A (1.95) BS01 F42 1.1.98.2 GO:0005829 ... P9WNE1 18434308 MOAD: Kd=4.5uM
    9 3b4y:B (1.95) BS01 F42 1.1.98.2 GO:0005829 ... P9WNE1 18434308 MOAD: Kd=4.5uM
    10 3iqe:A (1.8) BS02 F42 1.5.98.1 GO:0006730 ... P94951 19761261
    11 3iqe:B (1.8) BS02 F42 1.5.98.1 GO:0006730 ... P94951 19761261
    12 3iqe:C (1.8) BS02 F42 1.5.98.1 GO:0006730 ... P94951 19761261
    13 3iqe:D (1.8) BS03 F42 1.5.98.1 GO:0006730 ... P94951 19761261
    14 3iqe:E (1.8) BS03 F42 1.5.98.1 GO:0006730 ... P94951 19761261
    15 3iqe:F (1.8) BS03 F42 1.5.98.1 GO:0006730 ... P94951 19761261
    16 3r5r:A (2.101) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    17 3r5r:B (2.101) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    18 3r5r:C (2.101) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    19 3r5r:D (2.101) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    20 3r5r:E (2.101) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    21 3r5w:A (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    22 3r5w:A (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    23 3r5w:B (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    24 3r5w:B (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    25 3r5w:C (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    26 3r5w:C (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    27 3r5w:D (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    28 3r5w:D (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    29 3r5w:E (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    30 3r5w:E (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    31 3r5w:K (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    32 3r5w:K (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    33 3r5w:L (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    34 3r5w:L (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    35 3r5w:M (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    36 3r5w:M (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    37 3r5w:N (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    38 3r5w:N (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    39 3r5w:O (1.786) BS01 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    40 3r5w:O (1.786) BS02 F42 1.-.-.-
    1.1.98.-    		 GO:0016491 ... P9WP15 22244759 MOAD: Kd=1uM
    41 3r5y:A (1.801) BS01 F42 ? GO:0005886 ... Q5YUF0 22244759
    42 3r5y:B (1.801) BS01 F42 ? GO:0005886 ... Q5YUF0 22244759
    43 3r5y:C (1.801) BS01 F42 ? GO:0005886 ... Q5YUF0 22244759
    44 3r5y:D (1.801) BS01 F42 ? GO:0005886 ... Q5YUF0 22244759
    45 3r5z:A (1.503) BS01 F42 ? GO:0005886 ... Q5YYT7 22244759
    46 3r5z:B (1.503) BS01 F42 ? GO:0005886 ... Q5YYT7 22244759
    47 3zfs:C (4.0) BS01 F42 1.12.98.1 GO:0000166 ... D9PYF6 23483797
    48 4qvb:A (2.3) BS03 F42 1.-.-.- GO:0010181 ... O06553 25644473
    49 4qvb:A (2.3) BS04 F42 1.-.-.- GO:0010181 ... O06553 25644473
    50 4qvb:B (2.3) BS01 F42 1.-.-.- GO:0010181 ... O06553 25644473 MOAD: Kd=170uM
    51 4qvb:B (2.3) BS02 F42 1.-.-.- GO:0010181 ... O06553 25644473 MOAD: Kd=170uM
    52 4xoq:A (2.05) BS01 F42 1.3.8.17
    6.3.2.31
    6.3.2.34    		 GO:0016491 ... P9WP79 26861878 MOAD: Kd=1.47uM
    53 4xoq:B (2.05) BS01 F42 1.3.8.17
    6.3.2.31
    6.3.2.34    		 GO:0016491 ... P9WP79 26861878 MOAD: Kd=1.47uM
    54 4xoq:C (2.05) BS01 F42 1.3.8.17
    6.3.2.31
    6.3.2.34    		 GO:0016491 ... P9WP79 26861878 MOAD: Kd=1.47uM
    55 4xoq:D (2.05) BS01 F42 1.3.8.17
    6.3.2.31
    6.3.2.34    		 GO:0016491 ... P9WP79 26861878 MOAD: Kd=1.47uM
    56 5jv4:A (1.7) BS01 F42 ? GO:0005829 ... A0R6F1 N/A
    57 5jv4:A (1.7) BS02 F42 ? GO:0005829 ... A0R6F1 N/A
    58 5jv4:B (1.7) BS01 F42 ? GO:0005829 ... A0R6F1 N/A
    59 5jv4:B (1.7) BS02 F42 ? GO:0005829 ... A0R6F1 N/A
    60 5jv4:C (1.7) BS01 F42 ? GO:0005829 ... A0R6F1 N/A
    61 5jv4:C (1.7) BS02 F42 ? GO:0005829 ... A0R6F1 N/A
    62 5jv4:D (1.7) BS01 F42 ? GO:0005829 ... A0R6F1 N/A
    63 5jv4:D (1.7) BS02 F42 ? GO:0005829 ... A0R6F1 N/A
    64 5jv4:E (1.7) BS01 F42 ? GO:0005829 ... A0R6F1 N/A
    65 5jv4:E (1.7) BS02 F42 ? GO:0005829 ... A0R6F1 N/A
    66 5jv4:F (1.7) BS01 F42 ? GO:0005829 ... A0R6F1 N/A
    67 5jv4:F (1.7) BS02 F42 ? GO:0005829 ... A0R6F1 N/A
    68 7kl8:B (2.469) BS01 F42 1.1.98.- GO:0005886 ... P9WP11 34161270
    69 8g8p:AAA (1.83) BS01 F42 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 38346985
    70 8qpl:A (1.9) BS01 F42 1.5.98.2 GO:0005737 ... Q58929 38747406
    71 8qpl:B (1.9) BS01 F42 1.5.98.2 GO:0005737 ... Q58929 38747406
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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