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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 710 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5e7o:D (2.4) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    402 5e7o:F (2.4) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    403 5e7o:H (2.4) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    404 5e7o:J (2.4) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    405 5e7o:L (2.4) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    406 5exk:A (1.86) BS02 F3S 2.8.1.8 GO:0003824 ... P9WK91 27506792
    407 5exk:C (1.86) BS02 F3S 2.8.1.8 GO:0003824 ... P9WK91 27506792
    408 5exk:E (1.86) BS02 F3S 2.8.1.8 GO:0003824 ... P9WK91 27506792
    409 5exk:G (1.86) BS02 F3S 2.8.1.8 GO:0003824 ... P9WK91 27506792
    410 5exk:I (1.86) BS02 F3S 2.8.1.8 GO:0003824 ... P9WK91 27506792
    411 5exk:K (1.86) BS02 F3S 2.8.1.8 GO:0003824 ... P9WK91 27506792
    412 5fd1:A (1.9) BS02 F3S ? GO:0003677 ... P00214 8245025
    413 5jrd:S (1.2) BS02 F3S 1.12.99.6 GO:0005886 ... P69740 28001048
    414 5jrd:T (1.2) BS02 F3S 1.12.99.6 GO:0005886 ... P69740 28001048
    415 5lmm:S (1.2) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 N/A
    416 5lmm:T (1.2) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 N/A
    417 5lry:S (1.4) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    418 5lry:T (1.4) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    419 5mdj:S (1.48) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 29463722
    420 5mdk:S (1.5) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 29463722
    421 5mdl:S (1.41) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 29463722
    422 5nqd:A (2.2) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 N/A
    423 5nqd:C (2.2) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 N/A
    424 5nqd:E (2.2) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 N/A
    425 5nqd:G (2.2) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 N/A
    426 5vpn:B (4.2232) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 28615448
    427 5vpn:F (4.2232) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 28615448
    428 5xle:S (1.69) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    429 5xlf:S (1.71) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    430 5xlg:S (1.64) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    431 5xlh:S (1.93) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    432 5xmj:B (3.6) BS01 F3S 1.3.5.1 GO:0006099 ... T2G9X8 30297797
    433 5xmj:F (3.6) BS01 F3S 1.3.5.1 GO:0006099 ... T2G9X8 30297797
    434 5xmj:J (3.6) BS01 F3S 1.3.5.1 GO:0006099 ... T2G9X8 30297797
    435 5xmj:N (3.6) BS01 F3S 1.3.5.1 GO:0006099 ... T2G9X8 30297797
    436 5xvb:S (1.84) BS02 F3S 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    437 5xvb:T (1.84) BS02 F3S 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    438 5xvc:L (2.05) BS03 F3S 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    439 5xvc:S (2.05) BS02 F3S 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    440 5xvc:T (2.05) BS02 F3S 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    441 5xvd:S (1.57) BS02 F3S 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    442 5xvd:T (1.57) BS02 F3S 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    443 5y34:B (1.32) BS02 F3S 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    444 5y34:D (1.32) BS02 F3S 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    445 5y4n:S (1.69) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    446 6a2u:B (2.6) BS02 F3S 1.1.5.9 GO:0000166 ... Q8GQE7 31478907
    447 6a2u:D (2.6) BS02 F3S 1.1.5.9 GO:0000166 ... Q8GQE7 31478907
    448 6awf:B (3.35) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 29158068
    449 6awf:F (3.35) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 29158068
    450 6btm:B (3.4) BS01 F3S ? N/A A5FJF2 29695868
    451 6ehq:L (2.2) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    452 6ehq:M (2.2) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    453 6ehq:S (2.2) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 29555844
    454 6ehq:T (2.2) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 29555844
    455 6ehs:L (1.5) BS01 F3S 1.12.99.6 GO:0005886 ... P0ACE1 29555844
    456 6ehs:M (1.5) BS01 F3S 1.12.99.6 GO:0005886 ... P0ACE1 29555844
    457 6ehs:S (1.5) BS02 F3S 1.12.99.6 GO:0008901 ... B7LGE4 29555844
    458 6ehs:T (1.5) BS02 F3S 1.12.99.6 GO:0008901 ... B7LGE4 29555844
    459 6en9:L (1.5) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460 6en9:M (1.5) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    461 6en9:S (1.5) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 29555844
    462 6en9:T (1.5) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 29555844
    463 6f0k:B (3.87) BS03 F3S ? N/A D0MDD5 29712914
    464 6fd1:A (1.35) BS02 F3S ? GO:0003677 ... P00214 9600844
    465 6fdr:A (1.4) BS02 F3S ? GO:0003677 ... P00214 10387068
    466 6fpi:S (1.5) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    467 6fpi:T (1.5) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    468 6fpo:S (1.05) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    469 6fpo:T (1.05) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    470 6fpw:S (1.35) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    471 6fpw:T (1.35) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    472 6g7m:L (1.71) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    473 6g7m:S (1.71) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    474 6g7m:T (1.71) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    475 6g7r:S (1.2) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    476 6g7r:T (1.2) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    477 6g94:Q (2.5) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 29888350
    478 6g94:R (2.5) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 29888350
    479 6g94:S (2.5) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 29888350
    480 6g94:T (2.5) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 29888350
    481 6gal:S (1.25) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    482 6gal:T (1.25) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 30070475
    483 6gam:L (1.4) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    484 6gam:M (1.4) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    485 6gam:S (1.4) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 30070475
    486 6gam:T (1.4) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 30070475
    487 6gan:L (1.6) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    488 6gan:M (1.6) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    489 6gan:S (1.6) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 30070475
    490 6gan:T (1.6) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 30070475
    491 6lod:B (3.2) BS06 F3S ? GO:0016491 ... A7NJ88 32832681
    492 6loe:B (3.5) BS06 F3S ? GO:0016491 ... A7NJ88 32832681
    493 6lum:B (2.84) BS03 F3S 1.3.5.1 GO:0005886 ... A0QT07 32843629
    494 6lum:K (2.84) BS03 F3S 1.3.5.1 GO:0005886 ... A0QT07 32843629
    495 6lum:Q (2.84) BS03 F3S 1.3.5.1 GO:0005886 ... A0QT07 32843629
    496 6myo:B (2.2) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 34089891
    497 6myp:B (2.1) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 34089891
    498 6myq:B (1.97) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 34089891
    499 6myr:B (2.15) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 34089891
    500 6mys:B (2.37) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 34089891
    501 6myt:B (2.27) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 34089891
    502 6myu:B (1.97) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 34089891
    503 6rp2:S (1.35) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 32579353
    504 6rp2:T (1.35) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 32579353
    505 6s6s:A (3.9) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    506 6s6s:B (3.9) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    507 6s6s:C (3.9) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    508 6s6s:D (3.9) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    509 6s6t:A (4.1) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    510 6s6t:B (4.1) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    511 6s6t:C (4.1) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    512 6s6t:D (4.1) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    513 6s6u:A (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    514 6s6u:B (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    515 6s6u:C (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    516 6s6u:D (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    517 6s6u:E (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    518 6s6u:F (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    519 6s6x:A (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    520 6s6x:B (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    521 6s6x:C (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    522 6s6x:D (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    523 6s6x:E (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    524 6s6x:F (3.5) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    525 6syo:SSS (1.25) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    526 6syo:TTT (1.25) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    527 6syx:SSS (1.3) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    528 6syx:TTT (1.3) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    529 6szd:LLL (1.5) BS01 F3S N/A GO:0008901 ... N/A N/A
    530 6szd:MMM (1.5) BS01 F3S N/A GO:0008901 ... N/A N/A
    531 6szd:SSS (1.5) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    532 6szd:TTT (1.5) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    533 6szk:SSS (1.2) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    534 6szk:TTT (1.2) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    535 6uoi:A (1.953) BS01 F3S 4.2.1.2 GO:0004333 ... E9AE57 31743022
    536 6uoi:B (1.953) BS01 F3S 4.2.1.2 GO:0004333 ... E9AE57 31743022
    537 6wu6:B (3.6) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 33408407
    538 6wu6:F (3.6) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 33408407
    539 6wu6:J (3.6) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 33408407
    540 7b04:A (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    541 7b04:D (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    542 7b04:G (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    543 7b04:J (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    544 7b04:M (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    545 7b04:P (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    546 7b04:S (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    547 7b04:V (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    548 7cnr:A (3.39) BS01 F3S ? GO:0008299 ... Q5JGJ6 34099860
    549 7cnr:C (3.39) BS01 F3S ? GO:0008299 ... Q5JGJ6 34099860
    550 7cnr:E (3.39) BS01 F3S ? GO:0008299 ... Q5JGJ6 34099860
    551 7cnr:G (3.39) BS01 F3S ? GO:0008299 ... Q5JGJ6 34099860
    552 7cns:A (1.902) BS02 F3S ? GO:0008299 ... Q5JGJ6 34099860
    553 7d6v:B (2.53) BS03 F3S ? GO:0005886 ... A0QPJ2 33876763
    554 7d6x:B (2.88) BS03 F3S ? GO:0005886 ... A0QPJ2 33876763
    555 7fd1:A (1.3) BS02 F3S ? GO:0003677 ... P00214 10387068
    556 7fdr:A (1.4) BS02 F3S ? GO:0003677 ... P00214 10387068
    557 7jz2:B (2.5) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 33408407
    558 7jz2:F (2.5) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 33408407
    559 7jz2:J (2.5) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 33408407
    560 7mfm:G (2.42) BS02 F3S N/A GO:0006537 ... N/A 34931064
    561 7mfm:H (2.42) BS02 F3S N/A GO:0006537 ... N/A 34931064
    562 7mft:G (3.9) BS02 F3S 1.4.1.13 GO:0004355 ... P39812 34931064
    563 7mjv:A (2.24) BS02 F3S 2.8.4.3 GO:0003824 ... A0A174NUT3 34526715
    564 7mjx:A (1.5) BS02 F3S 2.8.4.3 GO:0003824 ... A0A174NUT3 34526715
    565 7mjx:B (1.5) BS02 F3S 2.8.4.3 GO:0003824 ... A0A174NUT3 34526715
    566 7mjy:A (1.86) BS02 F3S 2.8.4.3 GO:0003824 ... A0A174NUT3 34526715
    567 7nem:L (1.35) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    568 7nem:M (1.35) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    569 7nem:S (1.35) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    570 7nem:T (1.35) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 N/A
    571 7ok0:D (2.9) BS01 F3S 2.7.7.6 GO:0000428 ... P39471 34535646
    572 7oq4:D (3.27) BS01 F3S 2.7.7.6 GO:0000428 ... P39471 34535646
    573 7oqy:D (2.61) BS01 F3S 2.7.7.6 GO:0000428 ... P39471 34535646
    574 7p4m:A (1.55) BS02 F3S 2.5.1.72 GO:0005737 ... Q9X1X7 34609124
    575 7p4q:A (2.2) BS02 F3S 2.5.1.72 GO:0005737 ... Q9X1X7 34609124
    576 7utd:A (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    577 7utd:B (2.19) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    578 7utd:B (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    579 7utd:B (2.19) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    580 7utd:C (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    581 7utd:D (2.19) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    582 7utd:D (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    583 7utd:D (2.19) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    584 7utd:E (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    585 7utd:F (2.19) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    586 7utd:F (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    587 7utd:F (2.19) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    588 7utd:G (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    589 7utd:H (2.19) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    590 7utd:H (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    591 7utd:H (2.19) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    592 7utd:I (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    593 7utd:J (2.19) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    594 7utd:J (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    595 7utd:J (2.19) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    596 7utd:K (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    597 7utd:L (2.19) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    598 7utd:L (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    599 7utd:L (2.19) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    600 7utd:M (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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