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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3pbd:A (1.7) BS01 F05 3.4.23.22 GO:0004190 ... P11838 21972967
    2 4y3e:A (1.25) BS01 F05 3.4.23.22 GO:0004190 ... P11838 N/A
    3 5n36:A (1.58) BS02 F05 2.7.11.11 GO:0000287 ... P25321 N/A
    4 6i51:H (1.4) BS03 F05 3.4.21.5 GO:0004252 ... P00734 N/A
    5 6yiw:A (0.97) BS02 F05 3.4.21.4 GO:0004175 ... P00760 N/A
    6 6yiy:A (1.11) BS01 F05 3.4.21.4 GO:0004175 ... P00760 N/A
    7 6zfj:A (1.0) BS02 F05 3.4.21.4 GO:0004175 ... P00760 N/A
    8 7ayw:A (1.78) BS01 F05 ? GO:0005515 ... P0A2U4 N/A
    9 7ayw:B (1.78) BS01 F05 ? GO:0005515 ... P0A2U4 N/A
    10 7ayw:B (1.78) BS02 F05 ? GO:0005515 ... P0A2U4 N/A
    11 8b4w:A (1.6) BS01 F05 3.4.21.75 GO:0004252 ... P09958 38385828
    12 8b4w:A (1.6) BS02 F05 3.4.21.75 GO:0004252 ... P09958 38385828
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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