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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2bxf:A (2.95) BS01 DZP ? GO:0003677 ... P02768 16169013 BindingDB: Kd=24547nM
    2 2bxf:B (2.95) BS01 DZP ? GO:0003677 ... P02768 16169013 BindingDB: Kd=24547nM
    3 6hup:A (3.58) BS03 DZP ? GO:0004888 ... P08219
    P14867    		 30602790
    4 6hup:B (3.58) BS02 DZP ? GO:0004888 ... P28472 30602790
    5 6hup:C (3.58) BS01 DZP ? GO:0004888 ... P18507 30602790
    6 6hup:D (3.58) BS01 DZP ? GO:0004888 ... P08219
    P14867    		 30602790
    7 6hup:E (3.58) BS02 DZP ? GO:0004888 ... P28472 30602790
    8 6x3x:A (2.92) BS02 DZP ? GO:0004888 ... P47870 32879488
    9 6x3x:A (2.92) BS03 DZP ? GO:0004888 ... P47870 32879488
    10 6x3x:B (2.92) BS01 DZP ? GO:0004888 ... P14867 32879488 BindingDB: Ki=14nM, Kd=36nM, EC50=85nM
    11 6x3x:C (2.92) BS02 DZP ? GO:0004888 ... P47870 32879488
    12 6x3x:D (2.92) BS03 DZP ? GO:0004888 ... P14867 32879488 BindingDB: Ki=14nM, Kd=36nM, EC50=85nM
    13 6x3x:D (2.92) BS04 DZP ? GO:0004888 ... P14867 32879488 BindingDB: Ki=14nM, Kd=36nM, EC50=85nM
    14 6x3x:E (2.92) BS02 DZP ? GO:0004888 ... P18507 32879488
    15 6x3x:E (2.92) BS03 DZP ? GO:0004888 ... P18507 32879488
    16 8bhk:A (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    17 8bhk:B (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    18 8bhk:C (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    19 8bhk:D (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    20 8bhk:E (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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