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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ixn:A (2.3) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12206776
    2 1ixn:B (2.3) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12206776
    3 1ixn:C (2.3) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12206776
    4 1ixn:D (2.3) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12206776
    5 1m5w:A (1.96) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12269807 MOAD: Kd=54uM
    PDBbind: -logKd/Ki=4.27, Kd=54uM
    6 1m5w:B (1.96) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12269807 MOAD: Kd=54uM
    7 1m5w:C (1.96) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12269807 MOAD: Kd=54uM
    8 1m5w:E (1.96) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12269807 MOAD: Kd=54uM
    PDBbind: -logKd/Ki=4.27, Kd=54uM
    9 1m5w:F (1.96) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12269807 MOAD: Kd=54uM
    10 1m5w:G (1.96) BS01 DXP 2.6.99.2 GO:0005737 ... P0A794 12269807 MOAD: Kd=54uM
    11 1q0q:A (1.9) BS01 DXP 1.1.1.267 GO:0008299 ... P45568 15567415
    12 1q0q:B (1.9) BS01 DXP 1.1.1.267 GO:0008299 ... P45568 15567415
    13 3gk0:A (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    14 3gk0:C (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    15 3gk0:D (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    16 3gk0:F (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    17 3gk0:G (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    18 3gk0:H (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    19 3ll3:A (2.002) BS02 DXP 2.7.1.12 GO:0005524 ... Q5FM28 N/A
    20 3ll3:B (2.002) BS02 DXP 2.7.1.12 GO:0005524 ... Q5FM28 N/A
    21 5z9y:A (1.48) BS01 DXP 2.8.1.10 GO:0005737 ... P9WG73 29428731
    22 5z9y:B (1.48) BS01 DXP 2.8.1.10 GO:0005737 ... P9WG73 29428731
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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