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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1uej:A (2.61) BS01 CTN 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    2 1uej:B (2.61) BS01 CTN 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    3 2fr6:A (2.07) BS02 CTN 3.5.4.5 GO:0001882 ... P56389 16784234
    4 2fr6:A (2.07) BS03 CTN 3.5.4.5 GO:0001882 ... P56389 16784234
    5 2fr6:C (2.07) BS01 CTN 3.5.4.5 GO:0001882 ... P56389 16784234
    6 2fr6:C (2.07) BS03 CTN 3.5.4.5 GO:0001882 ... P56389 16784234
    7 2fr6:D (2.07) BS03 CTN 3.5.4.5 GO:0001882 ... P56389 16784234
    8 2v34:A (2.3) BS01 CTN 2.7.1.148 GO:0005524 ... O67060 18422643
    9 2v34:B (2.3) BS01 CTN 2.7.1.148 GO:0005524 ... O67060 18422643
    10 3ive:A (1.7) BS03 CTN ? GO:0000166 ... A0A0H2VD83 N/A
    11 3p0z:A (1.95) BS03 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    12 3p0z:A (1.95) BS04 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    13 3p0z:B (1.95) BS02 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    14 3p0z:B (1.95) BS03 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    15 3p0z:C (1.95) BS01 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    16 3p0z:C (1.95) BS03 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    17 3p10:A (1.7) BS02 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    18 3p10:A (1.7) BS04 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    19 3p10:B (1.7) BS02 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    20 3p10:B (1.7) BS03 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    21 3p10:C (1.7) BS01 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    22 3p10:C (1.7) BS03 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    23 3qhd:A (1.7) BS02 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    24 3qhd:A (1.7) BS05 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    25 3qhd:B (1.7) BS02 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    26 3qhd:B (1.7) BS03 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    27 3qhd:C (1.7) BS01 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    28 3qhd:C (1.7) BS03 CTN 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    29 3t80:A (2.5) BS02 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    30 3t80:A (2.5) BS04 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    31 3t80:B (2.5) BS03 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    32 3t80:C (2.5) BS02 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    33 3t80:C (2.5) BS04 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    34 3t80:D (2.5) BS02 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    35 3t80:D (2.5) BS04 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    36 3t80:E (2.5) BS01 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    37 3t80:E (2.5) BS03 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    38 3t80:F (2.5) BS03 CTN 4.6.1.12 GO:0008299 ... Q8ZMF7 N/A
    39 3tka:A (2.25) BS02 CTN 2.1.1.199 GO:0005737 ... P60390 22561317
    40 3w34:A (1.91) BS01 CTN 2.7.1.48 GO:0004849 ... Q5SKR5 26510656
    41 3w34:B (1.91) BS01 CTN 2.7.1.48 GO:0004849 ... Q5SKR5 26510656
    42 3w8r:A (2.5) BS01 CTN 2.7.1.48 GO:0004849 ... Q5SKR5 28955773
    43 3w8r:B (2.5) BS01 CTN 2.7.1.48 GO:0004849 ... Q5SKR5 28955773
    44 4js1:A (2.09) BS01 CTN 2.4.3.1 GO:0006486 ... P15907 23999306
    45 4jwk:A (1.87) BS01 CTN 3.1.1.29 GO:0004045 ... D0C9L6 23844024 MOAD: Kd=5.3nM
    PDBbind: -logKd/Ki=8.32, Kd=4.79nM
    46 4lbx:A (1.7) BS02 CTN ? GO:0000166 ... Q2KDX6 N/A
    47 4lbx:B (1.7) BS02 CTN ? GO:0000166 ... Q2KDX6 N/A
    48 4ld2:A (1.55) BS02 CTN 3.5.-.- GO:0003824 ... Q82Y41 24083949 MOAD: Ka=43000M^-1
    49 4nwi:A (2.05) BS02 CTN 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q9W197 24603684
    50 4nwi:B (2.05) BS02 CTN 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q9W197 24603684
    51 4pda:A (2.608) BS01 CTN ? GO:0005337 ... Q9KPL5 25082345 PDBbind: -logKd/Ki=4.21, Kd=61uM
    52 5cso:A (1.78) BS01 CTN 3.2.2.22 GO:0000166 ... D9J2T9 29124196 PDBbind: -logKd/Ki=6.03, Kd=940nM
    53 5efo:E (1.63) BS01 CTN 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    54 5efo:F (1.63) BS01 CTN 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    55 5ey3:A (1.905) BS01 CTN 2.4.2.4 GO:0004645 ... Q7CP66 N/A
    56 5ey3:B (1.905) BS01 CTN 2.4.2.4 GO:0004645 ... Q7CP66 N/A
    57 5lok:A (1.109) BS01 CTN 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    58 5lok:B (1.109) BS01 CTN 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    59 5lok:C (1.109) BS01 CTN 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    60 5lok:D (1.109) BS01 CTN 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    61 5lok:E (1.109) BS01 CTN 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    62 5lok:F (1.109) BS01 CTN 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    63 5tbt:A (2.101) BS01 CTN 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    64 5w1c:A (3.18) BS02 CTN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    65 5w1c:B (3.18) BS03 CTN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    66 6cvu:A (2.426) BS01 CTN 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    67 6cvu:B (2.426) BS01 CTN 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    68 6cvu:C (2.426) BS01 CTN 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    69 6cvu:D (2.426) BS01 CTN 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    70 6nn0:B (2.343) BS01 CTN 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    71 6nn0:D (2.343) BS01 CTN 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    72 6ya4:A (2.2) BS01 CTN ? GO:0005886 ... A0A0H2UPF3 33242497
    73 6ya4:B (2.2) BS01 CTN ? GO:0005886 ... A0A0H2UPF3 33242497
    74 6ya4:C (2.2) BS01 CTN ? GO:0005886 ... A0A0H2UPF3 33242497
    75 6ya4:D (2.2) BS01 CTN ? GO:0005886 ... A0A0H2UPF3 33242497
    76 7vtf:A (2.20203) BS01 CTN 2.7.1.83 GO:0005524 ... P30235 35346685
    77 7vtf:B (2.20203) BS01 CTN 2.7.1.83 GO:0005524 ... P30235 35346685
    78 7vtf:C (2.20203) BS01 CTN 2.7.1.83 GO:0005524 ... P30235 35346685
    79 7vtf:D (2.20203) BS01 CTN 2.7.1.83 GO:0005524 ... P30235 35346685
    80 8j5f:A (1.7) BS01 CTN ? GO:0000166 ... A0A370RDE4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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