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BioLiP
Download all results in tab-seperated text for 121 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bzr:A (1.15) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10205052
    2 1dwr:A (1.45) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 10706294
    3 1dws:A (1.45) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 10706294
    4 1dxc:A (1.4) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10681426
    5 1e86:A (1.95) BS02 CMO ? GO:0005506 ... P00138 11060017
    6 1f5p:A (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    7 1f5p:B (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    8 1f5p:C (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    9 1f5p:D (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    10 1f5p:E (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    11 1gdi:A (1.8) BS02 CMO ? GO:0005344 ... P02240 8950274
    12 1mwc:A (1.7) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02189 9843395
    13 1mwc:B (1.7) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02189 9843395
    14 1nih:B (2.6) BS02 CMO ? GO:0004601 ... P68871 2370669
    15 1nih:D (2.6) BS02 CMO ? GO:0004601 ... P68871 2370669
    16 1oco:A (2.8) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 9624044
    17 1oco:N (2.8) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 9624044
    18 1p3v:A (2.25) BS02 CMO 1.14.99.3 GO:0004392 ... Q9RGD9 12819228
    19 1qsi:A (1.7) BS02 CMO ? GO:0004601 ... P69905 10512707
    20 1qsi:C (1.7) BS02 CMO ? GO:0004601 ... P69905 10512707
    21 1sdk:A (1.8) BS02 CMO ? GO:0004601 ... P69905 7723849
    22 1sdk:B (1.8) BS02 CMO ? GO:0004601 ... P68871 7723849
    23 1sdk:C (1.8) BS02 CMO ? GO:0004601 ... P69905 7723849
    24 1sdk:D (1.8) BS02 CMO ? GO:0004601 ... P68871 7723849
    25 1sdl:A (1.8) BS02 CMO ? GO:0004601 ... P69905 7723849
    26 1sdl:B (1.8) BS02 CMO ? GO:0004601 ... P68871 7723849
    27 1sdl:C (1.8) BS02 CMO ? GO:0004601 ... P69905 7723849
    28 1sdl:D (1.8) BS02 CMO ? GO:0004601 ... P68871 7723849
    29 1ubh:L (1.35) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    30 1ubj:L (1.35) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    31 1ubk:L (1.18) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    32 1ubl:L (1.2) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    33 1ubo:L (1.35) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    34 1ubr:L (1.34) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    35 1v4u:A (2.0) BS02 CMO ? GO:0004601 ... Q8AYM0 15117955
    36 1v4u:B (2.0) BS02 CMO ? GO:0004601 ... Q8AYM1 15117955
    37 1v4u:C (2.0) BS02 CMO ? GO:0004601 ... Q8AYM0 15117955
    38 1w4y:A (1.6) BS04 CMO 1.11.1.7 GO:0004601 ... P00433 15641789
    39 1xj2:A (2.0) BS02 CMO 2.7.13.3 GO:0006355 ... P23222 15779889
    40 1xj4:A (1.8) BS02 CMO 2.7.13.3 GO:0006355 ... P23222 15779889
    41 2bw9:M (1.68) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16085709
    42 2bwh:A (1.9) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16085709
    43 2g0r:A (1.95) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    44 2g0s:A (1.9) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    45 2g0v:A (1.95) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    46 2g0x:A (1.95) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    47 2g0z:A (1.95) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    48 2g10:A (1.9) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    49 2g11:A (1.9) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    50 2g12:A (1.9) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    51 2g14:A (1.9) BS02 CMO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 16790933
    52 2vv8:A (1.61) BS02 CMO 2.7.13.3 GO:0006355 ... P23222 18942854
    53 2vv8:B (1.61) BS02 CMO 2.7.13.3 GO:0006355 ... P23222 18942854
    54 2vv8:C (1.61) BS02 CMO 2.7.13.3 GO:0006355 ... P23222 18942854
    55 2vv8:D (1.61) BS03 CMO 2.7.13.3 GO:0006355 ... P23222 18942854
    56 2xjw:A (1.67) BS01 CMO 3.2.1.17 GO:0003796 ... P00698 21204537
    57 2xjw:A (1.67) BS02 CMO 3.2.1.17 GO:0003796 ... P00698 21204537
    58 2xjw:A (1.67) BS03 CMO 3.2.1.17 GO:0003796 ... P00698 21204537
    59 2xjw:A (1.67) BS04 CMO 3.2.1.17 GO:0003796 ... P00698 21204537
    60 2xjw:A (1.67) BS05 CMO 3.2.1.17 GO:0003796 ... P00698 21204537
    61 2ylg:A (1.05) BS02 CMO ? GO:0005506 ... P00138 21900609 MOAD: Kd=28mM
    62 3cf4:A (2.0) BS05 CMO 1.2.7.4 GO:0003824 ... Q46G04 18621675
    63 3daf:A (1.75) BS01 CMO 1.12.98.2 GO:0004735 ... Q58194 18653896
    64 3daf:A (1.75) BS02 CMO 1.12.98.2 GO:0004735 ... Q58194 18653896
    65 3dag:A (1.75) BS02 CMO 1.12.98.2 GO:0004735 ... Q58194 18653896
    66 3dag:A (1.75) BS03 CMO 1.12.98.2 GO:0004735 ... Q58194 18653896
    67 3g46:A (0.91) BS02 CMO ? GO:0001666 ... P02213 19913484
    68 3g46:B (0.91) BS02 CMO ? GO:0001666 ... P02213 19913484
    69 3g4q:A (1.6) BS02 CMO ? GO:0001666 ... P02213 19913484
    70 3g4q:B (1.6) BS02 CMO ? GO:0001666 ... P02213 19913484
    71 3g4r:A (1.6) BS02 CMO ? GO:0001666 ... P02213 19913484
    72 3g4r:B (1.6) BS02 CMO ? GO:0001666 ... P02213 19913484
    73 3g4u:A (2.1) BS02 CMO ? GO:0001666 ... P02213 19913484
    74 3g4u:B (2.1) BS03 CMO ? GO:0001666 ... P02213 19913484
    75 3g4v:A (2.1) BS02 CMO ? GO:0001666 ... P02213 19913484
    76 3g4v:B (2.1) BS03 CMO ? GO:0001666 ... P02213 19913484
    77 3g4w:A (1.9) BS02 CMO ? GO:0001666 ... P02213 19913484
    78 3g4w:B (1.9) BS03 CMO ? GO:0001666 ... P02213 19913484
    79 3g4y:A (1.7) BS02 CMO ? GO:0001666 ... P02213 19913484
    80 3g4y:B (1.7) BS03 CMO ? GO:0001666 ... P02213 19913484
    81 3g52:A (1.65) BS02 CMO ? GO:0001666 ... P02213 19913484
    82 3g52:B (1.65) BS03 CMO ? GO:0001666 ... P02213 19913484
    83 3g53:A (1.64) BS02 CMO ? GO:0001666 ... P02213 19913484
    84 3g53:B (1.64) BS03 CMO ? GO:0001666 ... P02213 19913484
    85 3mif:A (2.0) BS03 CMO 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 20958070
    86 3mlj:A (2.15) BS03 CMO 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 20958070
    87 3sdh:A (1.4) BS02 CMO ? GO:0001666 ... P02213 8289287
    88 3sdh:B (1.4) BS03 CMO ? GO:0001666 ... P02213 8289287
    89 3w4u:A (1.95) BS02 CMO ? GO:0004601 ... P02008 24100324
    90 3w4u:B (1.95) BS02 CMO ? GO:0004601 ... P68871 24100324
    91 3w4u:C (1.95) BS02 CMO ? GO:0004601 ... P02008 24100324
    92 3w4u:D (1.95) BS02 CMO ? GO:0004601 ... P68871 24100324
    93 3w4u:E (1.95) BS02 CMO ? GO:0004601 ... P02008 24100324
    94 3w4u:F (1.95) BS02 CMO ? GO:0004601 ... P68871 24100324
    95 4g7p:A (1.9) BS02 CMO 1.14.14.18 GO:0001525 ... P06762 23043644
    96 4g7t:A (1.9) BS02 CMO 1.14.14.18 GO:0001525 ... P06762 23043644
    97 4g7u:A (1.9) BS02 CMO 1.14.14.18 GO:0001525 ... P06762 23043644
    98 4g8p:A (1.9) BS02 CMO 1.14.14.18 GO:0001525 ... P06762 23043644
    99 4g98:A (2.3) BS02 CMO 1.14.14.18 GO:0001525 ... P06762 23043644
    100 4g99:A (2.3) BS02 CMO 1.14.14.18 GO:0001525 ... P06762 23043644
    101 4tkv:A (1.5) BS02 CMO 1.18.6.1 GO:0005524 ... P07328 25258081
    102 4tkv:A (1.5) BS03 CMO 1.18.6.1 GO:0005524 ... P07328 25258081
    103 4tkv:B (1.5) BS03 CMO 1.18.6.1 GO:0005524 ... P07329 25258081
    104 4tkv:C (1.5) BS02 CMO 1.18.6.1 GO:0005524 ... P07328 25258081
    105 4tkv:C (1.5) BS03 CMO 1.18.6.1 GO:0005524 ... P07328 25258081
    106 4tkv:D (1.5) BS05 CMO 1.18.6.1 GO:0005524 ... P07329 25258081
    107 5w97:A (2.3) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 28698372
    108 5wau:A (1.95) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 28698372
    109 5wau:a (1.95) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 28698372
    110 6i3t:A (2.0) BS02 CMO 1.7.-.- GO:0005092 ... Q9ER97 31576217
    111 6i40:A (1.9) BS02 CMO 1.7.-.- GO:0005092 ... Q9ER97 31576217
    112 7adr:A (1.0) BS03 CMO 1.18.6.1 GO:0005524 ... P16855 32915491
    113 7adr:D (1.0) BS03 CMO 1.18.6.1 GO:0005524 ... P16855 32915491
    114 7aiz:A (1.05) BS03 CMO 1.18.6.1 GO:0005524 ... P16855 34049880
    115 7aiz:A (1.05) BS04 CMO 1.18.6.1 GO:0005524 ... P16855 34049880
    116 7aiz:D (1.05) BS03 CMO 1.18.6.1 GO:0005524 ... P16855 34049880
    117 7aiz:D (1.05) BS04 CMO 1.18.6.1 GO:0005524 ... P16855 34049880
    118 7vxq:A (1.77) BS03 CMO 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 35102895
    119 7vxq:C (1.77) BS03 CMO 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 35102895
    120 8ajz:A (2.0) BS04 CMO 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    121 8qmk:A (1.3) BS01 CMO 1.8.-.- GO:0003824 ... Q9X0Z6 37962296
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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