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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14201 6kad:R (3.4) BS10 CLA ? GO:0009503 ... Q93WD2 31768031
    14202 6kad:R (3.4) BS11 CLA ? GO:0009503 ... Q93WD2 31768031
    14203 6kad:S (3.4) BS01 CLA ? GO:0003729 ... Q9FEK6 31768031
    14204 6kad:S (3.4) BS04 CLA ? GO:0003729 ... Q9FEK6 31768031
    14205 6kad:S (3.4) BS05 CLA ? GO:0003729 ... Q9FEK6 31768031
    14206 6kad:S (3.4) BS06 CLA ? GO:0003729 ... Q9FEK6 31768031
    14207 6kad:S (3.4) BS07 CLA ? GO:0003729 ... Q9FEK6 31768031
    14208 6kad:S (3.4) BS11 CLA ? GO:0003729 ... Q9FEK6 31768031
    14209 6kad:S (3.4) BS12 CLA ? GO:0003729 ... Q9FEK6 31768031
    14210 6kad:S (3.4) BS13 CLA ? GO:0003729 ... Q9FEK6 31768031
    14211 6kad:S (3.4) BS14 CLA ? GO:0003729 ... Q9FEK6 31768031
    14212 6kad:S (3.4) BS15 CLA ? GO:0003729 ... Q9FEK6 31768031
    14213 6kad:S (3.4) BS16 CLA ? GO:0003729 ... Q9FEK6 31768031
    14214 6kad:W (3.4) BS01 CLA ? GO:0009507 ... Q9SPI9 31768031
    14215 6kad:Y (3.4) BS03 CLA ? GO:0009416 ... Q93VE0 31768031
    14216 6kad:Y (3.4) BS04 CLA ? GO:0009416 ... Q93VE0 31768031
    14217 6kad:Y (3.4) BS05 CLA ? GO:0009416 ... Q93VE0 31768031
    14218 6kad:Y (3.4) BS11 CLA ? GO:0009416 ... Q93VE0 31768031
    14219 6kad:Y (3.4) BS12 CLA ? GO:0009416 ... Q93VE0 31768031
    14220 6kad:Y (3.4) BS13 CLA ? GO:0009416 ... Q93VE0 31768031
    14221 6kad:Y (3.4) BS14 CLA ? GO:0009416 ... Q93VE0 31768031
    14222 6kad:Y (3.4) BS15 CLA ? GO:0009416 ... Q93VE0 31768031
    14223 6kad:a (3.4) BS03 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    14224 6kad:a (3.4) BS04 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    14225 6kad:a (3.4) BS05 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    14226 6kad:a (3.4) BS08 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    14227 6kad:a (3.4) BS09 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    14228 6kad:b (3.4) BS01 CLA ? GO:0009507 ... P37255 31768031
    14229 6kad:b (3.4) BS02 CLA ? GO:0009507 ... P37255 31768031
    14230 6kad:b (3.4) BS03 CLA ? GO:0009507 ... P37255 31768031
    14231 6kad:b (3.4) BS04 CLA ? GO:0009507 ... P37255 31768031
    14232 6kad:b (3.4) BS05 CLA ? GO:0009507 ... P37255 31768031
    14233 6kad:b (3.4) BS06 CLA ? GO:0009507 ... P37255 31768031
    14234 6kad:b (3.4) BS07 CLA ? GO:0009507 ... P37255 31768031
    14235 6kad:b (3.4) BS08 CLA ? GO:0009507 ... P37255 31768031
    14236 6kad:b (3.4) BS09 CLA ? GO:0009507 ... P37255 31768031
    14237 6kad:b (3.4) BS10 CLA ? GO:0009507 ... P37255 31768031
    14238 6kad:b (3.4) BS11 CLA ? GO:0009507 ... P37255 31768031
    14239 6kad:b (3.4) BS12 CLA ? GO:0009507 ... P37255 31768031
    14240 6kad:b (3.4) BS13 CLA ? GO:0009507 ... P37255 31768031
    14241 6kad:b (3.4) BS14 CLA ? GO:0009507 ... P37255 31768031
    14242 6kad:b (3.4) BS15 CLA ? GO:0009507 ... P37255 31768031
    14243 6kad:b (3.4) BS16 CLA ? GO:0009507 ... P37255 31768031
    14244 6kad:b (3.4) BS17 CLA ? GO:0009507 ... P37255 31768031
    14245 6kad:b (3.4) BS18 CLA ? GO:0009507 ... P37255 31768031
    14246 6kad:c (3.4) BS02 CLA ? GO:0005737 ... P10898 31768031
    14247 6kad:c (3.4) BS03 CLA ? GO:0005737 ... P10898 31768031
    14248 6kad:c (3.4) BS04 CLA ? GO:0005737 ... P10898 31768031
    14249 6kad:c (3.4) BS05 CLA ? GO:0005737 ... P10898 31768031
    14250 6kad:c (3.4) BS06 CLA ? GO:0005737 ... P10898 31768031
    14251 6kad:c (3.4) BS07 CLA ? GO:0005737 ... P10898 31768031
    14252 6kad:c (3.4) BS08 CLA ? GO:0005737 ... P10898 31768031
    14253 6kad:c (3.4) BS09 CLA ? GO:0005737 ... P10898 31768031
    14254 6kad:c (3.4) BS10 CLA ? GO:0005737 ... P10898 31768031
    14255 6kad:c (3.4) BS11 CLA ? GO:0005737 ... P10898 31768031
    14256 6kad:c (3.4) BS12 CLA ? GO:0005737 ... P10898 31768031
    14257 6kad:c (3.4) BS13 CLA ? GO:0005737 ... P10898 31768031
    14258 6kad:c (3.4) BS14 CLA ? GO:0005737 ... P10898 31768031
    14259 6kad:d (3.4) BS02 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    14260 6kad:d (3.4) BS05 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    14261 6kad:d (3.4) BS07 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    14262 6kad:d (3.4) BS08 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    14263 6kad:g (3.4) BS02 CLA ? GO:0009416 ... Q93WE0 31768031
    14264 6kad:g (3.4) BS03 CLA ? GO:0009416 ... Q93WE0 31768031
    14265 6kad:g (3.4) BS04 CLA ? GO:0009416 ... Q93WE0 31768031
    14266 6kad:g (3.4) BS10 CLA ? GO:0009416 ... Q93WE0 31768031
    14267 6kad:g (3.4) BS11 CLA ? GO:0009416 ... Q93WE0 31768031
    14268 6kad:g (3.4) BS12 CLA ? GO:0009416 ... Q93WE0 31768031
    14269 6kad:g (3.4) BS13 CLA ? GO:0009416 ... Q93WE0 31768031
    14270 6kad:g (3.4) BS14 CLA ? GO:0009416 ... Q93WE0 31768031
    14271 6kad:h (3.4) BS01 CLA ? GO:0009507 ... P22666 31768031
    14272 6kad:h (3.4) BS02 CLA ? GO:0009507 ... P22666 31768031
    14273 6kad:h (3.4) BS03 CLA ? GO:0009507 ... P22666 31768031
    14274 6kad:i (3.4) BS01 CLA ? GO:0005737 ... P59763 31768031
    14275 6kad:k (3.4) BS01 CLA ? GO:0005737 ... P18263 31768031
    14276 6kad:m (3.4) BS01 CLA ? GO:0005737 ... P92277 31768031
    14277 6kad:n (3.4) BS03 CLA ? GO:0009416 ... Q93WL4 31768031
    14278 6kad:n (3.4) BS04 CLA ? GO:0009416 ... Q93WL4 31768031
    14279 6kad:n (3.4) BS10 CLA ? GO:0009416 ... Q93WL4 31768031
    14280 6kad:n (3.4) BS11 CLA ? GO:0009416 ... Q93WL4 31768031
    14281 6kad:n (3.4) BS12 CLA ? GO:0009416 ... Q93WL4 31768031
    14282 6kad:n (3.4) BS13 CLA ? GO:0009416 ... Q93WL4 31768031
    14283 6kad:n (3.4) BS14 CLA ? GO:0009416 ... Q93WL4 31768031
    14284 6kad:p (3.4) BS02 CLA ? GO:0009416 ... Q93WL4 31768031
    14285 6kad:p (3.4) BS03 CLA ? GO:0009416 ... Q93WL4 31768031
    14286 6kad:p (3.4) BS04 CLA ? GO:0009416 ... Q93WL4 31768031
    14287 6kad:p (3.4) BS10 CLA ? GO:0009416 ... Q93WL4 31768031
    14288 6kad:p (3.4) BS11 CLA ? GO:0009416 ... Q93WL4 31768031
    14289 6kad:p (3.4) BS12 CLA ? GO:0009416 ... Q93WL4 31768031
    14290 6kad:p (3.4) BS13 CLA ? GO:0009416 ... Q93WL4 31768031
    14291 6kad:p (3.4) BS14 CLA ? GO:0009416 ... Q93WL4 31768031
    14292 6kad:q (3.4) BS04 CLA ? GO:0009416 ... Q93WE0 31768031
    14293 6kad:q (3.4) BS05 CLA ? GO:0009416 ... Q93WE0 31768031
    14294 6kad:q (3.4) BS06 CLA ? GO:0009416 ... Q93WE0 31768031
    14295 6kad:q (3.4) BS12 CLA ? GO:0009416 ... Q93WE0 31768031
    14296 6kad:q (3.4) BS13 CLA ? GO:0009416 ... Q93WE0 31768031
    14297 6kad:q (3.4) BS14 CLA ? GO:0009416 ... Q93WE0 31768031
    14298 6kad:q (3.4) BS15 CLA ? GO:0009416 ... Q93WE0 31768031
    14299 6kad:q (3.4) BS16 CLA ? GO:0009416 ... Q93WE0 31768031
    14300 6kad:r (3.4) BS01 CLA ? GO:0009503 ... Q93WD2 31768031
    14301 6kad:r (3.4) BS02 CLA ? GO:0009503 ... Q93WD2 31768031
    14302 6kad:r (3.4) BS03 CLA ? GO:0009503 ... Q93WD2 31768031
    14303 6kad:r (3.4) BS07 CLA ? GO:0009503 ... Q93WD2 31768031
    14304 6kad:r (3.4) BS08 CLA ? GO:0009503 ... Q93WD2 31768031
    14305 6kad:r (3.4) BS09 CLA ? GO:0009503 ... Q93WD2 31768031
    14306 6kad:r (3.4) BS10 CLA ? GO:0009503 ... Q93WD2 31768031
    14307 6kad:r (3.4) BS11 CLA ? GO:0009503 ... Q93WD2 31768031
    14308 6kad:s (3.4) BS01 CLA ? GO:0003729 ... Q9FEK6 31768031
    14309 6kad:s (3.4) BS04 CLA ? GO:0003729 ... Q9FEK6 31768031
    14310 6kad:s (3.4) BS05 CLA ? GO:0003729 ... Q9FEK6 31768031
    14311 6kad:s (3.4) BS06 CLA ? GO:0003729 ... Q9FEK6 31768031
    14312 6kad:s (3.4) BS07 CLA ? GO:0003729 ... Q9FEK6 31768031
    14313 6kad:s (3.4) BS11 CLA ? GO:0003729 ... Q9FEK6 31768031
    14314 6kad:s (3.4) BS12 CLA ? GO:0003729 ... Q9FEK6 31768031
    14315 6kad:s (3.4) BS13 CLA ? GO:0003729 ... Q9FEK6 31768031
    14316 6kad:s (3.4) BS14 CLA ? GO:0003729 ... Q9FEK6 31768031
    14317 6kad:s (3.4) BS15 CLA ? GO:0003729 ... Q9FEK6 31768031
    14318 6kad:s (3.4) BS16 CLA ? GO:0003729 ... Q9FEK6 31768031
    14319 6kad:w (3.4) BS01 CLA ? GO:0009507 ... Q9SPI9 31768031
    14320 6kad:y (3.4) BS03 CLA ? GO:0009416 ... Q93VE0 31768031
    14321 6kad:y (3.4) BS04 CLA ? GO:0009416 ... Q93VE0 31768031
    14322 6kad:y (3.4) BS05 CLA ? GO:0009416 ... Q93VE0 31768031
    14323 6kad:y (3.4) BS11 CLA ? GO:0009416 ... Q93VE0 31768031
    14324 6kad:y (3.4) BS12 CLA ? GO:0009416 ... Q93VE0 31768031
    14325 6kad:y (3.4) BS13 CLA ? GO:0009416 ... Q93VE0 31768031
    14326 6kad:y (3.4) BS14 CLA ? GO:0009416 ... Q93VE0 31768031
    14327 6kad:y (3.4) BS15 CLA ? GO:0009416 ... Q93VE0 31768031
    14328 6kaf:1 (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    14329 6kaf:1 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    14330 6kaf:1 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    14331 6kaf:1 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    14332 6kaf:1 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    14333 6kaf:1 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    14334 6kaf:1 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    14335 6kaf:2 (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    14336 6kaf:2 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    14337 6kaf:2 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    14338 6kaf:2 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    14339 6kaf:2 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    14340 6kaf:2 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    14341 6kaf:2 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    14342 6kaf:3 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    14343 6kaf:3 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    14344 6kaf:3 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    14345 6kaf:3 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    14346 6kaf:3 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    14347 6kaf:3 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    14348 6kaf:3 (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    14349 6kaf:4 (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    14350 6kaf:4 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    14351 6kaf:4 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    14352 6kaf:4 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    14353 6kaf:4 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    14354 6kaf:4 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    14355 6kaf:4 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    14356 6kaf:4 (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    14357 6kaf:5 (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    14358 6kaf:5 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    14359 6kaf:5 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    14360 6kaf:5 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    14361 6kaf:5 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    14362 6kaf:5 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    14363 6kaf:5 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    14364 6kaf:5 (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    14365 6kaf:6 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    14366 6kaf:6 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    14367 6kaf:6 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    14368 6kaf:6 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    14369 6kaf:6 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    14370 6kaf:6 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    14371 6kaf:A (3.73) BS02 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    14372 6kaf:A (3.73) BS03 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    14373 6kaf:A (3.73) BS04 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    14374 6kaf:A (3.73) BS06 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    14375 6kaf:A (3.73) BS07 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    14376 6kaf:B (3.73) BS01 CLA ? GO:0009507 ... P37255 31570614
    14377 6kaf:B (3.73) BS02 CLA ? GO:0009507 ... P37255 31570614
    14378 6kaf:B (3.73) BS03 CLA ? GO:0009507 ... P37255 31570614
    14379 6kaf:B (3.73) BS04 CLA ? GO:0009507 ... P37255 31570614
    14380 6kaf:B (3.73) BS05 CLA ? GO:0009507 ... P37255 31570614
    14381 6kaf:B (3.73) BS06 CLA ? GO:0009507 ... P37255 31570614
    14382 6kaf:B (3.73) BS07 CLA ? GO:0009507 ... P37255 31570614
    14383 6kaf:B (3.73) BS08 CLA ? GO:0009507 ... P37255 31570614
    14384 6kaf:B (3.73) BS09 CLA ? GO:0009507 ... P37255 31570614
    14385 6kaf:B (3.73) BS10 CLA ? GO:0009507 ... P37255 31570614
    14386 6kaf:B (3.73) BS11 CLA ? GO:0009507 ... P37255 31570614
    14387 6kaf:B (3.73) BS12 CLA ? GO:0009507 ... P37255 31570614
    14388 6kaf:B (3.73) BS13 CLA ? GO:0009507 ... P37255 31570614
    14389 6kaf:B (3.73) BS14 CLA ? GO:0009507 ... P37255 31570614
    14390 6kaf:B (3.73) BS15 CLA ? GO:0009507 ... P37255 31570614
    14391 6kaf:B (3.73) BS16 CLA ? GO:0009507 ... P37255 31570614
    14392 6kaf:C (3.73) BS01 CLA ? GO:0005737 ... P10898 31570614
    14393 6kaf:C (3.73) BS02 CLA ? GO:0005737 ... P10898 31570614
    14394 6kaf:C (3.73) BS03 CLA ? GO:0005737 ... P10898 31570614
    14395 6kaf:C (3.73) BS04 CLA ? GO:0005737 ... P10898 31570614
    14396 6kaf:C (3.73) BS05 CLA ? GO:0005737 ... P10898 31570614
    14397 6kaf:C (3.73) BS06 CLA ? GO:0005737 ... P10898 31570614
    14398 6kaf:C (3.73) BS07 CLA ? GO:0005737 ... P10898 31570614
    14399 6kaf:C (3.73) BS08 CLA ? GO:0005737 ... P10898 31570614
    14400 6kaf:C (3.73) BS09 CLA ? GO:0005737 ... P10898 31570614

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218