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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 2o01:A (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    602 2o01:A (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    603 2o01:A (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    604 2o01:A (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    605 2o01:A (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    606 2o01:A (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    607 2o01:A (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    608 2o01:A (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    609 2o01:A (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    610 2o01:A (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    611 2o01:A (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    612 2o01:A (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    613 2o01:A (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    614 2o01:A (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    615 2o01:A (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    616 2o01:A (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    617 2o01:A (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    618 2o01:A (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    619 2o01:A (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    620 2o01:A (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    621 2o01:A (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    622 2o01:A (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    623 2o01:A (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    624 2o01:A (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    625 2o01:A (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    626 2o01:A (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    627 2o01:A (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    628 2o01:A (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    629 2o01:A (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    630 2o01:A (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    631 2o01:A (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    632 2o01:A (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    633 2o01:A (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    634 2o01:A (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    635 2o01:B (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    636 2o01:B (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    637 2o01:B (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    638 2o01:B (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    639 2o01:B (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    640 2o01:B (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    641 2o01:B (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    642 2o01:B (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    643 2o01:B (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    644 2o01:B (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    645 2o01:B (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    646 2o01:B (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    647 2o01:B (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    648 2o01:B (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    649 2o01:B (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    650 2o01:B (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    651 2o01:B (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    652 2o01:B (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    653 2o01:B (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    654 2o01:B (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    655 2o01:B (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    656 2o01:B (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    657 2o01:B (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    658 2o01:B (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    659 2o01:B (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    660 2o01:B (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    661 2o01:B (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    662 2o01:B (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    663 2o01:B (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    664 2o01:B (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    665 2o01:B (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    666 2o01:B (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    667 2o01:B (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    668 2o01:B (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    669 2o01:B (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    670 2o01:B (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    671 2o01:B (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    672 2o01:B (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    673 2o01:B (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    674 2o01:B (3.4) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    675 2o01:B (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    676 2o01:B (3.4) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    677 2o01:B (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    678 2o01:B (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    679 2o01:B (3.4) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    680 2o01:B (3.4) BS48 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    681 2o01:F (3.4) BS01 CLA ? GO:0009522 ... P12355 17476261
    682 2o01:F (3.4) BS02 CLA ? GO:0009522 ... P12355 17476261
    683 2o01:F (3.4) BS03 CLA ? GO:0009522 ... P12355 17476261
    684 2o01:F (3.4) BS04 CLA ? GO:0009522 ... P12355 17476261
    685 2o01:G (3.4) BS01 CLA ? GO:0009522 ... P12357 17476261
    686 2o01:G (3.4) BS02 CLA ? GO:0009522 ... P12357 17476261
    687 2o01:G (3.4) BS03 CLA ? GO:0009522 ... P12357 17476261
    688 2o01:H (3.4) BS01 CLA ? GO:0009522 ... P22179 17476261
    689 2o01:I (3.4) BS01 CLA ? GO:0009522 ... P17227 17476261
    690 2o01:I (3.4) BS02 CLA ? GO:0009522 ... P17227 17476261
    691 2o01:I (3.4) BS03 CLA ? GO:0009522 ... P17227 17476261
    692 2o01:J (3.4) BS01 CLA ? GO:0009507 ... P17230 17476261
    693 2o01:K (3.4) BS01 CLA N/A N/A N/A 17476261
    694 2o01:L (3.4) BS01 CLA ? GO:0009522 ... Q41385 17476261
    695 2o01:L (3.4) BS02 CLA ? GO:0009522 ... Q41385 17476261
    696 2o01:L (3.4) BS03 CLA ? GO:0009522 ... Q41385 17476261
    697 2o01:L (3.4) BS04 CLA ? GO:0009522 ... Q41385 17476261
    698 2o01:L (3.4) BS05 CLA ? GO:0009522 ... Q41385 17476261
    699 2o01:L (3.4) BS06 CLA ? GO:0009522 ... Q41385 17476261
    700 2o01:L (3.4) BS07 CLA ? GO:0009522 ... Q41385 17476261
    701 2pps:A (4.0) BS01 CLA N/A N/A N/A 8901876
    702 2pps:A (4.0) BS02 CLA N/A N/A N/A 8901876
    703 2pps:B (4.0) BS02 CLA N/A N/A N/A 8901876
    704 2wsc:1 (3.3) BS01 CLA ? GO:0003729 ... Q01667 19923216
    705 2wsc:1 (3.3) BS02 CLA ? GO:0003729 ... Q01667 19923216
    706 2wsc:1 (3.3) BS03 CLA ? GO:0003729 ... Q01667 19923216
    707 2wsc:1 (3.3) BS04 CLA ? GO:0003729 ... Q01667 19923216
    708 2wsc:1 (3.3) BS05 CLA ? GO:0003729 ... Q01667 19923216
    709 2wsc:1 (3.3) BS06 CLA ? GO:0003729 ... Q01667 19923216
    710 2wsc:1 (3.3) BS07 CLA ? GO:0003729 ... Q01667 19923216
    711 2wsc:1 (3.3) BS08 CLA ? GO:0003729 ... Q01667 19923216
    712 2wsc:1 (3.3) BS09 CLA ? GO:0003729 ... Q01667 19923216
    713 2wsc:2 (3.3) BS01 CLA ? GO:0009416 ... Q41038 19923216
    714 2wsc:2 (3.3) BS02 CLA ? GO:0009416 ... Q41038 19923216
    715 2wsc:2 (3.3) BS03 CLA ? GO:0009416 ... Q41038 19923216
    716 2wsc:2 (3.3) BS04 CLA ? GO:0009416 ... Q41038 19923216
    717 2wsc:2 (3.3) BS05 CLA ? GO:0009416 ... Q41038 19923216
    718 2wsc:2 (3.3) BS06 CLA ? GO:0009416 ... Q41038 19923216
    719 2wsc:3 (3.3) BS01 CLA ? GO:0009507 ... C6TEX2 19923216
    720 2wsc:3 (3.3) BS02 CLA ? GO:0009507 ... C6TEX2 19923216
    721 2wsc:3 (3.3) BS03 CLA ? GO:0009507 ... C6TEX2 19923216
    722 2wsc:3 (3.3) BS04 CLA ? GO:0009507 ... C6TEX2 19923216
    723 2wsc:3 (3.3) BS05 CLA ? GO:0009507 ... C6TEX2 19923216
    724 2wsc:3 (3.3) BS06 CLA ? GO:0009507 ... C6TEX2 19923216
    725 2wsc:3 (3.3) BS07 CLA ? GO:0009507 ... C6TEX2 19923216
    726 2wsc:3 (3.3) BS08 CLA ? GO:0009507 ... C6TEX2 19923216
    727 2wsc:4 (3.3) BS01 CLA ? GO:0009416 ... Q9SQL2 19923216
    728 2wsc:4 (3.3) BS02 CLA ? GO:0009416 ... Q9SQL2 19923216
    729 2wsc:4 (3.3) BS03 CLA ? GO:0009416 ... Q9SQL2 19923216
    730 2wsc:4 (3.3) BS04 CLA ? GO:0009416 ... Q9SQL2 19923216
    731 2wsc:4 (3.3) BS05 CLA ? GO:0009416 ... Q9SQL2 19923216
    732 2wsc:4 (3.3) BS06 CLA ? GO:0009416 ... Q9SQL2 19923216
    733 2wsc:4 (3.3) BS07 CLA ? GO:0009416 ... Q9SQL2 19923216
    734 2wsc:4 (3.3) BS08 CLA ? GO:0009416 ... Q9SQL2 19923216
    735 2wsc:4 (3.3) BS09 CLA ? GO:0009416 ... Q9SQL2 19923216
    736 2wsc:4 (3.3) BS10 CLA ? GO:0009416 ... Q9SQL2 19923216
    737 2wsc:4 (3.3) BS11 CLA ? GO:0009416 ... Q9SQL2 19923216
    738 2wsc:A (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    739 2wsc:A (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    740 2wsc:A (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    741 2wsc:A (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    742 2wsc:A (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    743 2wsc:A (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    744 2wsc:A (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    745 2wsc:A (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    746 2wsc:A (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    747 2wsc:A (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    748 2wsc:A (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    749 2wsc:A (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    750 2wsc:A (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    751 2wsc:A (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    752 2wsc:A (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    753 2wsc:A (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    754 2wsc:A (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    755 2wsc:A (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    756 2wsc:A (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    757 2wsc:A (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    758 2wsc:A (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    759 2wsc:A (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    760 2wsc:A (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    761 2wsc:A (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    762 2wsc:A (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    763 2wsc:A (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    764 2wsc:A (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    765 2wsc:A (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    766 2wsc:A (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    767 2wsc:A (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    768 2wsc:A (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    769 2wsc:A (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    770 2wsc:A (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    771 2wsc:A (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    772 2wsc:A (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    773 2wsc:A (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    774 2wsc:A (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    775 2wsc:A (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    776 2wsc:A (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    777 2wsc:A (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    778 2wsc:A (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    779 2wsc:A (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    780 2wsc:A (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    781 2wsc:A (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    782 2wsc:B (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    783 2wsc:B (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    784 2wsc:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    785 2wsc:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    786 2wsc:B (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    787 2wsc:B (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    788 2wsc:B (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    789 2wsc:B (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    790 2wsc:B (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    791 2wsc:B (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    792 2wsc:B (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    793 2wsc:B (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    794 2wsc:B (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    795 2wsc:B (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    796 2wsc:B (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    797 2wsc:B (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    798 2wsc:B (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    799 2wsc:B (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    800 2wsc:B (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 19923216

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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