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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7201 5xnm:7 (3.2) BS13 CLA ? GO:0009416 ... Q04918 28839073
    7202 5xnm:7 (3.2) BS14 CLA ? GO:0009416 ... Q04918 28839073
    7203 5xnm:7 (3.2) BS15 CLA ? GO:0009416 ... Q04918 28839073
    7204 5xnm:7 (3.2) BS16 CLA ? GO:0009416 ... Q04918 28839073
    7205 5xnm:8 (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7206 5xnm:8 (3.2) BS03 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7207 5xnm:8 (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7208 5xnm:8 (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7209 5xnm:8 (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7210 5xnm:8 (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7211 5xnm:8 (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7212 5xnm:8 (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7213 5xnm:A (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7214 5xnm:A (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7215 5xnm:A (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7216 5xnm:A (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7217 5xnm:A (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7218 5xnm:B (3.2) BS02 CLA ? GO:0009507 ... Q9XQR6 28839073
    7219 5xnm:B (3.2) BS03 CLA ? GO:0009507 ... Q9XQR6 28839073
    7220 5xnm:B (3.2) BS04 CLA ? GO:0009507 ... Q9XQR6 28839073
    7221 5xnm:B (3.2) BS05 CLA ? GO:0009507 ... Q9XQR6 28839073
    7222 5xnm:B (3.2) BS06 CLA ? GO:0009507 ... Q9XQR6 28839073
    7223 5xnm:B (3.2) BS07 CLA ? GO:0009507 ... Q9XQR6 28839073
    7224 5xnm:B (3.2) BS08 CLA ? GO:0009507 ... Q9XQR6 28839073
    7225 5xnm:B (3.2) BS09 CLA ? GO:0009507 ... Q9XQR6 28839073
    7226 5xnm:B (3.2) BS10 CLA ? GO:0009507 ... Q9XQR6 28839073
    7227 5xnm:B (3.2) BS11 CLA ? GO:0009507 ... Q9XQR6 28839073
    7228 5xnm:B (3.2) BS12 CLA ? GO:0009507 ... Q9XQR6 28839073
    7229 5xnm:B (3.2) BS13 CLA ? GO:0009507 ... Q9XQR6 28839073
    7230 5xnm:B (3.2) BS14 CLA ? GO:0009507 ... Q9XQR6 28839073
    7231 5xnm:B (3.2) BS15 CLA ? GO:0009507 ... Q9XQR6 28839073
    7232 5xnm:B (3.2) BS16 CLA ? GO:0009507 ... Q9XQR6 28839073
    7233 5xnm:B (3.2) BS17 CLA ? GO:0009507 ... Q9XQR6 28839073
    7234 5xnm:B (3.2) BS18 CLA ? GO:0009507 ... Q9XQR6 28839073
    7235 5xnm:B (3.2) BS20 CLA ? GO:0009507 ... Q9XQR6 28839073
    7236 5xnm:C (3.2) BS02 CLA ? GO:0005737 ... P06004 28839073
    7237 5xnm:C (3.2) BS03 CLA ? GO:0005737 ... P06004 28839073
    7238 5xnm:C (3.2) BS04 CLA ? GO:0005737 ... P06004 28839073
    7239 5xnm:C (3.2) BS05 CLA ? GO:0005737 ... P06004 28839073
    7240 5xnm:C (3.2) BS06 CLA ? GO:0005737 ... P06004 28839073
    7241 5xnm:C (3.2) BS07 CLA ? GO:0005737 ... P06004 28839073
    7242 5xnm:C (3.2) BS08 CLA ? GO:0005737 ... P06004 28839073
    7243 5xnm:C (3.2) BS09 CLA ? GO:0005737 ... P06004 28839073
    7244 5xnm:C (3.2) BS10 CLA ? GO:0005737 ... P06004 28839073
    7245 5xnm:C (3.2) BS11 CLA ? GO:0005737 ... P06004 28839073
    7246 5xnm:C (3.2) BS12 CLA ? GO:0005737 ... P06004 28839073
    7247 5xnm:C (3.2) BS13 CLA ? GO:0005737 ... P06004 28839073
    7248 5xnm:C (3.2) BS14 CLA ? GO:0005737 ... P06004 28839073
    7249 5xnm:D (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7250 5xnm:D (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7251 5xnm:D (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7252 5xnm:D (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7253 5xnm:D (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7254 5xnm:G (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    7255 5xnm:G (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    7256 5xnm:G (3.2) BS04 CLA ? GO:0009765 ... P27490 28839073
    7257 5xnm:G (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    7258 5xnm:G (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    7259 5xnm:G (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    7260 5xnm:G (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7261 5xnm:G (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    7262 5xnm:H (3.2) BS01 CLA ? GO:0009507 ... Q9XQR3 28839073
    7263 5xnm:H (3.2) BS02 CLA ? GO:0009507 ... Q9XQR3 28839073
    7264 5xnm:I (3.2) BS01 CLA ? GO:0005737 ... D5MAJ9 28839073
    7265 5xnm:I (3.2) BS02 CLA ? GO:0005737 ... D5MAJ9 28839073
    7266 5xnm:K (3.2) BS01 CLA ? GO:0005737 ... D5MAJ8 28839073
    7267 5xnm:K (3.2) BS02 CLA ? GO:0005737 ... D5MAJ8 28839073
    7268 5xnm:L (3.2) BS01 CLA ? GO:0005737 ... P60147 28839073
    7269 5xnm:M (3.2) BS01 CLA ? GO:0005737 ... P69529 28839073
    7270 5xnm:N (3.2) BS01 CLA ? GO:0009765 ... P27490 28839073
    7271 5xnm:N (3.2) BS05 CLA ? GO:0009765 ... P27490 28839073
    7272 5xnm:N (3.2) BS06 CLA ? GO:0009765 ... P27490 28839073
    7273 5xnm:N (3.2) BS07 CLA ? GO:0009765 ... P27490 28839073
    7274 5xnm:N (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7275 5xnm:N (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    7276 5xnm:N (3.2) BS15 CLA ? GO:0009765 ... P27490 28839073
    7277 5xnm:N (3.2) BS16 CLA ? GO:0009765 ... P27490 28839073
    7278 5xnm:N (3.2) BS17 CLA ? GO:0009765 ... P27490 28839073
    7279 5xnm:R (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7280 5xnm:R (3.2) BS02 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7281 5xnm:R (3.2) BS03 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7282 5xnm:R (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7283 5xnm:R (3.2) BS08 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7284 5xnm:R (3.2) BS09 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7285 5xnm:R (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7286 5xnm:R (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7287 5xnm:R (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7288 5xnm:R (3.2) BS14 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7289 5xnm:S (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7290 5xnm:S (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7291 5xnm:S (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7292 5xnm:S (3.2) BS09 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7293 5xnm:S (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7294 5xnm:S (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7295 5xnm:S (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7296 5xnm:S (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7297 5xnm:S (3.2) BS14 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7298 5xnm:Y (3.2) BS01 CLA ? GO:0009765 ... P27490 28839073
    7299 5xnm:Y (3.2) BS05 CLA ? GO:0009765 ... P27490 28839073
    7300 5xnm:Y (3.2) BS06 CLA ? GO:0009765 ... P27490 28839073
    7301 5xnm:Y (3.2) BS07 CLA ? GO:0009765 ... P27490 28839073
    7302 5xnm:Y (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7303 5xnm:Y (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    7304 5xnm:Y (3.2) BS15 CLA ? GO:0009765 ... P27490 28839073
    7305 5xnm:Y (3.2) BS16 CLA ? GO:0009765 ... P27490 28839073
    7306 5xnm:Y (3.2) BS17 CLA ? GO:0009765 ... P27490 28839073
    7307 5xnm:Z (3.2) BS01 CLA ? GO:0009507 ... Q32902 28839073
    7308 5xnm:a (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7309 5xnm:a (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7310 5xnm:a (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7311 5xnm:a (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7312 5xnm:a (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7313 5xnm:b (3.2) BS02 CLA ? GO:0009507 ... Q9XQR6 28839073
    7314 5xnm:b (3.2) BS03 CLA ? GO:0009507 ... Q9XQR6 28839073
    7315 5xnm:b (3.2) BS04 CLA ? GO:0009507 ... Q9XQR6 28839073
    7316 5xnm:b (3.2) BS05 CLA ? GO:0009507 ... Q9XQR6 28839073
    7317 5xnm:b (3.2) BS06 CLA ? GO:0009507 ... Q9XQR6 28839073
    7318 5xnm:b (3.2) BS07 CLA ? GO:0009507 ... Q9XQR6 28839073
    7319 5xnm:b (3.2) BS08 CLA ? GO:0009507 ... Q9XQR6 28839073
    7320 5xnm:b (3.2) BS09 CLA ? GO:0009507 ... Q9XQR6 28839073
    7321 5xnm:b (3.2) BS10 CLA ? GO:0009507 ... Q9XQR6 28839073
    7322 5xnm:b (3.2) BS11 CLA ? GO:0009507 ... Q9XQR6 28839073
    7323 5xnm:b (3.2) BS12 CLA ? GO:0009507 ... Q9XQR6 28839073
    7324 5xnm:b (3.2) BS13 CLA ? GO:0009507 ... Q9XQR6 28839073
    7325 5xnm:b (3.2) BS14 CLA ? GO:0009507 ... Q9XQR6 28839073
    7326 5xnm:b (3.2) BS15 CLA ? GO:0009507 ... Q9XQR6 28839073
    7327 5xnm:b (3.2) BS16 CLA ? GO:0009507 ... Q9XQR6 28839073
    7328 5xnm:b (3.2) BS17 CLA ? GO:0009507 ... Q9XQR6 28839073
    7329 5xnm:b (3.2) BS18 CLA ? GO:0009507 ... Q9XQR6 28839073
    7330 5xnm:b (3.2) BS20 CLA ? GO:0009507 ... Q9XQR6 28839073
    7331 5xnm:c (3.2) BS02 CLA ? GO:0005737 ... P06004 28839073
    7332 5xnm:c (3.2) BS03 CLA ? GO:0005737 ... P06004 28839073
    7333 5xnm:c (3.2) BS04 CLA ? GO:0005737 ... P06004 28839073
    7334 5xnm:c (3.2) BS05 CLA ? GO:0005737 ... P06004 28839073
    7335 5xnm:c (3.2) BS06 CLA ? GO:0005737 ... P06004 28839073
    7336 5xnm:c (3.2) BS07 CLA ? GO:0005737 ... P06004 28839073
    7337 5xnm:c (3.2) BS08 CLA ? GO:0005737 ... P06004 28839073
    7338 5xnm:c (3.2) BS09 CLA ? GO:0005737 ... P06004 28839073
    7339 5xnm:c (3.2) BS10 CLA ? GO:0005737 ... P06004 28839073
    7340 5xnm:c (3.2) BS11 CLA ? GO:0005737 ... P06004 28839073
    7341 5xnm:c (3.2) BS12 CLA ? GO:0005737 ... P06004 28839073
    7342 5xnm:c (3.2) BS13 CLA ? GO:0005737 ... P06004 28839073
    7343 5xnm:c (3.2) BS14 CLA ? GO:0005737 ... P06004 28839073
    7344 5xnm:d (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7345 5xnm:d (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7346 5xnm:d (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7347 5xnm:d (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7348 5xnm:d (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7349 5xnm:g (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    7350 5xnm:g (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    7351 5xnm:g (3.2) BS04 CLA ? GO:0009765 ... P27490 28839073
    7352 5xnm:g (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    7353 5xnm:g (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    7354 5xnm:g (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    7355 5xnm:g (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7356 5xnm:g (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    7357 5xnm:h (3.2) BS01 CLA ? GO:0009507 ... Q9XQR3 28839073
    7358 5xnm:h (3.2) BS02 CLA ? GO:0009507 ... Q9XQR3 28839073
    7359 5xnm:i (3.2) BS01 CLA ? GO:0005737 ... D5MAJ9 28839073
    7360 5xnm:i (3.2) BS02 CLA ? GO:0005737 ... D5MAJ9 28839073
    7361 5xnm:k (3.2) BS01 CLA ? GO:0005737 ... D5MAJ8 28839073
    7362 5xnm:k (3.2) BS02 CLA ? GO:0005737 ... D5MAJ8 28839073
    7363 5xnm:l (3.2) BS01 CLA ? GO:0005737 ... P60147 28839073
    7364 5xnm:m (3.2) BS01 CLA ? GO:0005737 ... P69529 28839073
    7365 5xnm:n (3.2) BS01 CLA ? GO:0009765 ... P27490 28839073
    7366 5xnm:n (3.2) BS05 CLA ? GO:0009765 ... P27490 28839073
    7367 5xnm:n (3.2) BS06 CLA ? GO:0009765 ... P27490 28839073
    7368 5xnm:n (3.2) BS07 CLA ? GO:0009765 ... P27490 28839073
    7369 5xnm:n (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7370 5xnm:n (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    7371 5xnm:n (3.2) BS15 CLA ? GO:0009765 ... P27490 28839073
    7372 5xnm:n (3.2) BS16 CLA ? GO:0009765 ... P27490 28839073
    7373 5xnm:n (3.2) BS17 CLA ? GO:0009765 ... P27490 28839073
    7374 5xnm:r (3.2) BS02 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7375 5xnm:r (3.2) BS03 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7376 5xnm:r (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7377 5xnm:r (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7378 5xnm:r (3.2) BS09 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7379 5xnm:r (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7380 5xnm:r (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7381 5xnm:r (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7382 5xnm:r (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7383 5xnm:r (3.2) BS15 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7384 5xnm:s (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7385 5xnm:s (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7386 5xnm:s (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7387 5xnm:s (3.2) BS09 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7388 5xnm:s (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7389 5xnm:s (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7390 5xnm:s (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7391 5xnm:s (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7392 5xnm:s (3.2) BS14 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7393 5xnm:y (3.2) BS01 CLA ? GO:0009765 ... P27490 28839073
    7394 5xnm:y (3.2) BS05 CLA ? GO:0009765 ... P27490 28839073
    7395 5xnm:y (3.2) BS06 CLA ? GO:0009765 ... P27490 28839073
    7396 5xnm:y (3.2) BS07 CLA ? GO:0009765 ... P27490 28839073
    7397 5xnm:y (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7398 5xnm:y (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    7399 5xnm:y (3.2) BS15 CLA ? GO:0009765 ... P27490 28839073
    7400 5xnm:y (3.2) BS16 CLA ? GO:0009765 ... P27490 28839073

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218