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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6601 5tis:i (2.25) BS01 CLA ? GO:0005737 ... Q8DJZ6 27871088
    6602 5tis:i (2.25) BS02 CLA ? GO:0005737 ... Q8DJZ6 27871088
    6603 5tis:k (2.25) BS01 CLA ? GO:0005737 ... Q9F1K9 27871088
    6604 5tis:k (2.25) BS02 CLA ? GO:0005737 ... Q9F1K9 27871088
    6605 5tis:x (2.25) BS01 CLA ? GO:0009523 ... Q9F1R6 27871088
    6606 5v2c:A (1.9) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6607 5v2c:A (1.9) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6608 5v2c:A (1.9) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6609 5v2c:A (1.9) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6610 5v2c:A (1.9) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6611 5v2c:B (1.9) BS01 CLA ? GO:0009521 ... D0VWR1 28741056
    6612 5v2c:B (1.9) BS02 CLA ? GO:0009521 ... D0VWR1 28741056
    6613 5v2c:B (1.9) BS03 CLA ? GO:0009521 ... D0VWR1 28741056
    6614 5v2c:B (1.9) BS04 CLA ? GO:0009521 ... D0VWR1 28741056
    6615 5v2c:B (1.9) BS05 CLA ? GO:0009521 ... D0VWR1 28741056
    6616 5v2c:B (1.9) BS06 CLA ? GO:0009521 ... D0VWR1 28741056
    6617 5v2c:B (1.9) BS07 CLA ? GO:0009521 ... D0VWR1 28741056
    6618 5v2c:B (1.9) BS08 CLA ? GO:0009521 ... D0VWR1 28741056
    6619 5v2c:B (1.9) BS09 CLA ? GO:0009521 ... D0VWR1 28741056
    6620 5v2c:B (1.9) BS10 CLA ? GO:0009521 ... D0VWR1 28741056
    6621 5v2c:B (1.9) BS11 CLA ? GO:0009521 ... D0VWR1 28741056
    6622 5v2c:B (1.9) BS12 CLA ? GO:0009521 ... D0VWR1 28741056
    6623 5v2c:B (1.9) BS13 CLA ? GO:0009521 ... D0VWR1 28741056
    6624 5v2c:B (1.9) BS14 CLA ? GO:0009521 ... D0VWR1 28741056
    6625 5v2c:B (1.9) BS15 CLA ? GO:0009521 ... D0VWR1 28741056
    6626 5v2c:B (1.9) BS16 CLA ? GO:0009521 ... D0VWR1 28741056
    6627 5v2c:C (1.9) BS02 CLA ? GO:0005737 ... D0VWR7 28741056
    6628 5v2c:C (1.9) BS03 CLA ? GO:0005737 ... D0VWR7 28741056
    6629 5v2c:C (1.9) BS04 CLA ? GO:0005737 ... D0VWR7 28741056
    6630 5v2c:C (1.9) BS05 CLA ? GO:0005737 ... D0VWR7 28741056
    6631 5v2c:C (1.9) BS06 CLA ? GO:0005737 ... D0VWR7 28741056
    6632 5v2c:C (1.9) BS07 CLA ? GO:0005737 ... D0VWR7 28741056
    6633 5v2c:C (1.9) BS08 CLA ? GO:0005737 ... D0VWR7 28741056
    6634 5v2c:C (1.9) BS09 CLA ? GO:0005737 ... D0VWR7 28741056
    6635 5v2c:C (1.9) BS10 CLA ? GO:0005737 ... D0VWR7 28741056
    6636 5v2c:C (1.9) BS11 CLA ? GO:0005737 ... D0VWR7 28741056
    6637 5v2c:C (1.9) BS12 CLA ? GO:0005737 ... D0VWR7 28741056
    6638 5v2c:C (1.9) BS13 CLA ? GO:0005737 ... D0VWR7 28741056
    6639 5v2c:C (1.9) BS14 CLA ? GO:0005737 ... D0VWR7 28741056
    6640 5v2c:D (1.9) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6641 5v2c:D (1.9) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6642 5v2c:D (1.9) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6643 5v2c:D (1.9) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6644 5v2c:D (1.9) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6645 5v2c:H (1.9) BS01 CLA ? GO:0009523 ... P19052 28741056
    6646 5v2c:H (1.9) BS02 CLA ? GO:0009523 ... P19052 28741056
    6647 5v2c:H (1.9) BS03 CLA ? GO:0009523 ... P19052 28741056
    6648 5v2c:I (1.9) BS01 CLA ? GO:0005737 ... P12240 28741056
    6649 5v2c:I (1.9) BS02 CLA ? GO:0005737 ... P12240 28741056
    6650 5v2c:K (1.9) BS02 CLA ? GO:0005737 ... P19054 28741056
    6651 5v2c:K (1.9) BS03 CLA ? GO:0005737 ... P19054 28741056
    6652 5v2c:X (1.9) BS01 CLA ? GO:0009523 ... D0VWR4 28741056
    6653 5v2c:a (1.9) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6654 5v2c:a (1.9) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6655 5v2c:a (1.9) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6656 5v2c:a (1.9) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6657 5v2c:a (1.9) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    6658 5v2c:b (1.9) BS01 CLA ? GO:0009521 ... D0VWR1 28741056
    6659 5v2c:b (1.9) BS02 CLA ? GO:0009521 ... D0VWR1 28741056
    6660 5v2c:b (1.9) BS03 CLA ? GO:0009521 ... D0VWR1 28741056
    6661 5v2c:b (1.9) BS04 CLA ? GO:0009521 ... D0VWR1 28741056
    6662 5v2c:b (1.9) BS05 CLA ? GO:0009521 ... D0VWR1 28741056
    6663 5v2c:b (1.9) BS06 CLA ? GO:0009521 ... D0VWR1 28741056
    6664 5v2c:b (1.9) BS07 CLA ? GO:0009521 ... D0VWR1 28741056
    6665 5v2c:b (1.9) BS08 CLA ? GO:0009521 ... D0VWR1 28741056
    6666 5v2c:b (1.9) BS09 CLA ? GO:0009521 ... D0VWR1 28741056
    6667 5v2c:b (1.9) BS10 CLA ? GO:0009521 ... D0VWR1 28741056
    6668 5v2c:b (1.9) BS11 CLA ? GO:0009521 ... D0VWR1 28741056
    6669 5v2c:b (1.9) BS12 CLA ? GO:0009521 ... D0VWR1 28741056
    6670 5v2c:b (1.9) BS13 CLA ? GO:0009521 ... D0VWR1 28741056
    6671 5v2c:b (1.9) BS14 CLA ? GO:0009521 ... D0VWR1 28741056
    6672 5v2c:b (1.9) BS15 CLA ? GO:0009521 ... D0VWR1 28741056
    6673 5v2c:b (1.9) BS16 CLA ? GO:0009521 ... D0VWR1 28741056
    6674 5v2c:c (1.9) BS02 CLA ? GO:0005737 ... D0VWR7 28741056
    6675 5v2c:c (1.9) BS03 CLA ? GO:0005737 ... D0VWR7 28741056
    6676 5v2c:c (1.9) BS04 CLA ? GO:0005737 ... D0VWR7 28741056
    6677 5v2c:c (1.9) BS05 CLA ? GO:0005737 ... D0VWR7 28741056
    6678 5v2c:c (1.9) BS06 CLA ? GO:0005737 ... D0VWR7 28741056
    6679 5v2c:c (1.9) BS07 CLA ? GO:0005737 ... D0VWR7 28741056
    6680 5v2c:c (1.9) BS08 CLA ? GO:0005737 ... D0VWR7 28741056
    6681 5v2c:c (1.9) BS09 CLA ? GO:0005737 ... D0VWR7 28741056
    6682 5v2c:c (1.9) BS10 CLA ? GO:0005737 ... D0VWR7 28741056
    6683 5v2c:c (1.9) BS11 CLA ? GO:0005737 ... D0VWR7 28741056
    6684 5v2c:c (1.9) BS12 CLA ? GO:0005737 ... D0VWR7 28741056
    6685 5v2c:c (1.9) BS13 CLA ? GO:0005737 ... D0VWR7 28741056
    6686 5v2c:c (1.9) BS14 CLA ? GO:0005737 ... D0VWR7 28741056
    6687 5v2c:d (1.9) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6688 5v2c:d (1.9) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6689 5v2c:d (1.9) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6690 5v2c:d (1.9) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6691 5v2c:d (1.9) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6692 5v2c:d (1.9) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    6693 5v2c:h (1.9) BS01 CLA ? GO:0009523 ... P19052 28741056
    6694 5v2c:h (1.9) BS02 CLA ? GO:0009523 ... P19052 28741056
    6695 5v2c:h (1.9) BS03 CLA ? GO:0009523 ... P19052 28741056
    6696 5v2c:h (1.9) BS04 CLA ? GO:0009523 ... P19052 28741056
    6697 5v2c:i (1.9) BS01 CLA ? GO:0005737 ... P12240 28741056
    6698 5v2c:k (1.9) BS02 CLA ? GO:0005737 ... P19054 28741056
    6699 5v2c:k (1.9) BS03 CLA ? GO:0005737 ... P19054 28741056
    6700 5v2c:x (1.9) BS01 CLA ? GO:0009523 ... D0VWR4 28741056
    6701 5ws5:A (2.35) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6702 5ws5:A (2.35) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6703 5ws5:A (2.35) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6704 5ws5:A (2.35) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6705 5ws5:A (2.35) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6706 5ws5:B (2.35) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    6707 5ws5:B (2.35) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    6708 5ws5:B (2.35) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    6709 5ws5:B (2.35) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    6710 5ws5:B (2.35) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    6711 5ws5:B (2.35) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    6712 5ws5:B (2.35) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    6713 5ws5:B (2.35) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    6714 5ws5:B (2.35) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    6715 5ws5:B (2.35) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    6716 5ws5:B (2.35) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    6717 5ws5:B (2.35) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    6718 5ws5:B (2.35) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    6719 5ws5:B (2.35) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    6720 5ws5:B (2.35) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    6721 5ws5:B (2.35) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    6722 5ws5:C (2.35) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    6723 5ws5:C (2.35) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    6724 5ws5:C (2.35) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    6725 5ws5:C (2.35) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    6726 5ws5:C (2.35) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    6727 5ws5:C (2.35) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    6728 5ws5:C (2.35) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    6729 5ws5:C (2.35) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    6730 5ws5:C (2.35) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    6731 5ws5:C (2.35) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    6732 5ws5:C (2.35) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    6733 5ws5:C (2.35) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    6734 5ws5:C (2.35) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    6735 5ws5:D (2.35) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6736 5ws5:D (2.35) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6737 5ws5:D (2.35) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6738 5ws5:D (2.35) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6739 5ws5:D (2.35) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6740 5ws5:H (2.35) BS01 CLA ? GO:0009523 ... P19052 28219079
    6741 5ws5:H (2.35) BS02 CLA ? GO:0009523 ... P19052 28219079
    6742 5ws5:H (2.35) BS03 CLA ? GO:0009523 ... P19052 28219079
    6743 5ws5:I (2.35) BS01 CLA ? GO:0005737 ... P12240 28219079
    6744 5ws5:K (2.35) BS02 CLA ? GO:0005737 ... P19054 28219079
    6745 5ws5:K (2.35) BS03 CLA ? GO:0005737 ... P19054 28219079
    6746 5ws5:Z (2.35) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    6747 5ws5:a (2.35) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6748 5ws5:a (2.35) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6749 5ws5:a (2.35) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6750 5ws5:a (2.35) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6751 5ws5:a (2.35) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6752 5ws5:b (2.35) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    6753 5ws5:b (2.35) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    6754 5ws5:b (2.35) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    6755 5ws5:b (2.35) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    6756 5ws5:b (2.35) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    6757 5ws5:b (2.35) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    6758 5ws5:b (2.35) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    6759 5ws5:b (2.35) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    6760 5ws5:b (2.35) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    6761 5ws5:b (2.35) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    6762 5ws5:b (2.35) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    6763 5ws5:b (2.35) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    6764 5ws5:b (2.35) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    6765 5ws5:b (2.35) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    6766 5ws5:b (2.35) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    6767 5ws5:b (2.35) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    6768 5ws5:c (2.35) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    6769 5ws5:c (2.35) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    6770 5ws5:c (2.35) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    6771 5ws5:c (2.35) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    6772 5ws5:c (2.35) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    6773 5ws5:c (2.35) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    6774 5ws5:c (2.35) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    6775 5ws5:c (2.35) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    6776 5ws5:c (2.35) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    6777 5ws5:c (2.35) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    6778 5ws5:c (2.35) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    6779 5ws5:c (2.35) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    6780 5ws5:c (2.35) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    6781 5ws5:d (2.35) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6782 5ws5:d (2.35) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6783 5ws5:d (2.35) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6784 5ws5:d (2.35) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6785 5ws5:d (2.35) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6786 5ws5:d (2.35) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6787 5ws5:h (2.35) BS01 CLA ? GO:0009523 ... P19052 28219079
    6788 5ws5:h (2.35) BS02 CLA ? GO:0009523 ... P19052 28219079
    6789 5ws5:h (2.35) BS03 CLA ? GO:0009523 ... P19052 28219079
    6790 5ws5:i (2.35) BS01 CLA ? GO:0005737 ... P12240 28219079
    6791 5ws5:i (2.35) BS02 CLA ? GO:0005737 ... P12240 28219079
    6792 5ws5:k (2.35) BS02 CLA ? GO:0005737 ... P19054 28219079
    6793 5ws5:k (2.35) BS03 CLA ? GO:0005737 ... P19054 28219079
    6794 5ws6:A (2.35) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6795 5ws6:A (2.35) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6796 5ws6:A (2.35) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6797 5ws6:A (2.35) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6798 5ws6:A (2.35) BS11 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6799 5ws6:A (2.35) BS12 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6800 5ws6:B (2.35) BS01 CLA ? GO:0009521 ... D0VWR1 28219079

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218