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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 5l8r:H (2.6) BS03 CLA ? GO:0009507 ... A0A0M3KL10 28248295
    5802 5l8r:I (2.6) BS01 CLA ? GO:0009507 ... P17227 28248295
    5803 5l8r:I (2.6) BS02 CLA ? GO:0009507 ... P17227 28248295
    5804 5l8r:I (2.6) BS03 CLA ? GO:0009507 ... P17227 28248295
    5805 5l8r:I (2.6) BS04 CLA ? GO:0009507 ... P17227 28248295
    5806 5l8r:J (2.6) BS01 CLA ? GO:0009507 ... D5MAL3 28248295
    5807 5l8r:J (2.6) BS02 CLA ? GO:0009507 ... D5MAL3 28248295
    5808 5l8r:J (2.6) BS03 CLA ? GO:0009507 ... D5MAL3 28248295
    5809 5l8r:J (2.6) BS04 CLA ? GO:0009507 ... D5MAL3 28248295
    5810 5l8r:J (2.6) BS05 CLA ? GO:0009507 ... D5MAL3 28248295
    5811 5l8r:K (2.6) BS01 CLA ? GO:0009507 ... E1C9L3 28248295
    5812 5l8r:K (2.6) BS02 CLA ? GO:0009507 ... E1C9L3 28248295
    5813 5l8r:K (2.6) BS03 CLA ? GO:0009507 ... E1C9L3 28248295
    5814 5l8r:K (2.6) BS04 CLA ? GO:0009507 ... E1C9L3 28248295
    5815 5l8r:K (2.6) BS05 CLA ? GO:0009507 ... E1C9L3 28248295
    5816 5l8r:K (2.6) BS06 CLA ? GO:0009507 ... E1C9L3 28248295
    5817 5l8r:L (2.6) BS01 CLA ? GO:0009522 ... E1C9L1 28248295
    5818 5l8r:L (2.6) BS02 CLA ? GO:0009522 ... E1C9L1 28248295
    5819 5l8r:L (2.6) BS03 CLA ? GO:0009522 ... E1C9L1 28248295
    5820 5l8r:L (2.6) BS04 CLA ? GO:0009522 ... E1C9L1 28248295
    5821 5l8r:L (2.6) BS05 CLA ? GO:0009522 ... E1C9L1 28248295
    5822 5l8r:L (2.6) BS06 CLA ? GO:0009522 ... E1C9L1 28248295
    5823 5l8r:L (2.6) BS07 CLA ? GO:0009522 ... E1C9L1 28248295
    5824 5l8r:L (2.6) BS08 CLA ? GO:0009522 ... E1C9L1 28248295
    5825 5mdx:1 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    5826 5mdx:1 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5827 5mdx:1 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    5828 5mdx:1 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    5829 5mdx:1 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5830 5mdx:1 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5831 5mdx:1 (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    5832 5mdx:2 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    5833 5mdx:2 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5834 5mdx:2 (5.3) BS07 CLA ? GO:0009765 ... P04778 28604725
    5835 5mdx:2 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    5836 5mdx:2 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    5837 5mdx:2 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    5838 5mdx:2 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5839 5mdx:2 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5840 5mdx:3 (5.3) BS01 CLA ? GO:0009765 ... P04778 28604725
    5841 5mdx:3 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5842 5mdx:3 (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    5843 5mdx:3 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    5844 5mdx:3 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    5845 5mdx:3 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    5846 5mdx:3 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5847 5mdx:3 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5848 5mdx:4 (5.3) BS01 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5849 5mdx:4 (5.3) BS03 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5850 5mdx:4 (5.3) BS04 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5851 5mdx:4 (5.3) BS05 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5852 5mdx:4 (5.3) BS09 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5853 5mdx:4 (5.3) BS10 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5854 5mdx:5 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    5855 5mdx:5 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5856 5mdx:5 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    5857 5mdx:5 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    5858 5mdx:5 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5859 5mdx:5 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5860 5mdx:5 (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    5861 5mdx:6 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    5862 5mdx:6 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5863 5mdx:6 (5.3) BS07 CLA ? GO:0009765 ... P04778 28604725
    5864 5mdx:6 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    5865 5mdx:6 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    5866 5mdx:6 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    5867 5mdx:6 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5868 5mdx:6 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5869 5mdx:7 (5.3) BS01 CLA ? GO:0009765 ... P04778 28604725
    5870 5mdx:7 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5871 5mdx:7 (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    5872 5mdx:7 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    5873 5mdx:7 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    5874 5mdx:7 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    5875 5mdx:7 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5876 5mdx:7 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5877 5mdx:8 (5.3) BS01 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5878 5mdx:8 (5.3) BS03 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5879 5mdx:8 (5.3) BS04 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5880 5mdx:8 (5.3) BS05 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5881 5mdx:8 (5.3) BS09 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5882 5mdx:8 (5.3) BS10 CLA ? GO:0009765 ... Q9LMQ2 28604725
    5883 5mdx:A (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    5884 5mdx:A (5.3) BS06 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    5885 5mdx:A (5.3) BS07 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    5886 5mdx:B (5.3) BS01 CLA ? GO:0003729 ... P56777 28604725
    5887 5mdx:B (5.3) BS02 CLA ? GO:0003729 ... P56777 28604725
    5888 5mdx:B (5.3) BS03 CLA ? GO:0003729 ... P56777 28604725
    5889 5mdx:B (5.3) BS04 CLA ? GO:0003729 ... P56777 28604725
    5890 5mdx:B (5.3) BS05 CLA ? GO:0003729 ... P56777 28604725
    5891 5mdx:B (5.3) BS06 CLA ? GO:0003729 ... P56777 28604725
    5892 5mdx:B (5.3) BS07 CLA ? GO:0003729 ... P56777 28604725
    5893 5mdx:B (5.3) BS08 CLA ? GO:0003729 ... P56777 28604725
    5894 5mdx:B (5.3) BS09 CLA ? GO:0003729 ... P56777 28604725
    5895 5mdx:B (5.3) BS10 CLA ? GO:0003729 ... P56777 28604725
    5896 5mdx:B (5.3) BS11 CLA ? GO:0003729 ... P56777 28604725
    5897 5mdx:B (5.3) BS12 CLA ? GO:0003729 ... P56777 28604725
    5898 5mdx:B (5.3) BS13 CLA ? GO:0003729 ... P56777 28604725
    5899 5mdx:B (5.3) BS14 CLA ? GO:0003729 ... P56777 28604725
    5900 5mdx:B (5.3) BS15 CLA ? GO:0003729 ... P56777 28604725
    5901 5mdx:B (5.3) BS16 CLA ? GO:0003729 ... P56777 28604725
    5902 5mdx:C (5.3) BS01 CLA ? GO:0003729 ... P56778 28604725
    5903 5mdx:C (5.3) BS02 CLA ? GO:0003729 ... P56778 28604725
    5904 5mdx:C (5.3) BS03 CLA ? GO:0003729 ... P56778 28604725
    5905 5mdx:C (5.3) BS04 CLA ? GO:0003729 ... P56778 28604725
    5906 5mdx:C (5.3) BS05 CLA ? GO:0003729 ... P56778 28604725
    5907 5mdx:C (5.3) BS06 CLA ? GO:0003729 ... P56778 28604725
    5908 5mdx:C (5.3) BS07 CLA ? GO:0003729 ... P56778 28604725
    5909 5mdx:C (5.3) BS08 CLA ? GO:0003729 ... P56778 28604725
    5910 5mdx:C (5.3) BS09 CLA ? GO:0003729 ... P56778 28604725
    5911 5mdx:C (5.3) BS10 CLA ? GO:0003729 ... P56778 28604725
    5912 5mdx:C (5.3) BS11 CLA ? GO:0003729 ... P56778 28604725
    5913 5mdx:C (5.3) BS12 CLA ? GO:0003729 ... P56778 28604725
    5914 5mdx:C (5.3) BS13 CLA ? GO:0003729 ... P56778 28604725
    5915 5mdx:D (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    5916 5mdx:D (5.3) BS06 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    5917 5mdx:D (5.3) BS08 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    5918 5mdx:D (5.3) BS09 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    5919 5mdx:G (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    5920 5mdx:G (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5921 5mdx:G (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    5922 5mdx:G (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    5923 5mdx:G (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    5924 5mdx:G (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5925 5mdx:G (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5926 5mdx:G (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    5927 5mdx:H (5.3) BS01 CLA ? GO:0003729 ... P56780 28604725
    5928 5mdx:H (5.3) BS02 CLA ? GO:0003729 ... P56780 28604725
    5929 5mdx:N (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    5930 5mdx:N (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5931 5mdx:N (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    5932 5mdx:N (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    5933 5mdx:N (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    5934 5mdx:N (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5935 5mdx:N (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5936 5mdx:N (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    5937 5mdx:R (5.3) BS01 CLA ? GO:0009765 ... Q07473 28604725
    5938 5mdx:R (5.3) BS02 CLA ? GO:0009765 ... Q07473 28604725
    5939 5mdx:R (5.3) BS03 CLA ? GO:0009765 ... Q07473 28604725
    5940 5mdx:R (5.3) BS07 CLA ? GO:0009765 ... Q07473 28604725
    5941 5mdx:R (5.3) BS08 CLA ? GO:0009765 ... Q07473 28604725
    5942 5mdx:R (5.3) BS09 CLA ? GO:0009765 ... Q07473 28604725
    5943 5mdx:R (5.3) BS10 CLA ? GO:0009765 ... Q07473 28604725
    5944 5mdx:R (5.3) BS11 CLA ? GO:0009765 ... Q07473 28604725
    5945 5mdx:R (5.3) BS12 CLA ? GO:0009765 ... Q07473 28604725
    5946 5mdx:R (5.3) BS13 CLA ? GO:0009765 ... Q07473 28604725
    5947 5mdx:S (5.3) BS01 CLA ? GO:0009765 ... Q9XF89 28604725
    5948 5mdx:S (5.3) BS03 CLA ? GO:0009765 ... Q9XF89 28604725
    5949 5mdx:S (5.3) BS04 CLA ? GO:0009765 ... Q9XF89 28604725
    5950 5mdx:S (5.3) BS05 CLA ? GO:0009765 ... Q9XF89 28604725
    5951 5mdx:S (5.3) BS08 CLA ? GO:0009765 ... Q9XF89 28604725
    5952 5mdx:S (5.3) BS09 CLA ? GO:0009765 ... Q9XF89 28604725
    5953 5mdx:S (5.3) BS10 CLA ? GO:0009765 ... Q9XF89 28604725
    5954 5mdx:S (5.3) BS11 CLA ? GO:0009765 ... Q9XF89 28604725
    5955 5mdx:S (5.3) BS12 CLA ? GO:0009765 ... Q9XF89 28604725
    5956 5mdx:S (5.3) BS13 CLA ? GO:0009765 ... Q9XF89 28604725
    5957 5mdx:Y (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    5958 5mdx:Y (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    5959 5mdx:Y (5.3) BS05 CLA ? GO:0009765 ... P04778 28604725
    5960 5mdx:Y (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    5961 5mdx:Y (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    5962 5mdx:Y (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    5963 5mdx:Y (5.3) BS14 CLA ? GO:0009765 ... P04778 28604725
    5964 5mdx:Y (5.3) BS15 CLA ? GO:0009765 ... P04778 28604725
    5965 5mdx:a (5.3) BS03 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    5966 5mdx:a (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    5967 5mdx:a (5.3) BS06 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    5968 5mdx:a (5.3) BS07 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    5969 5mdx:b (5.3) BS02 CLA ? GO:0003729 ... P56777 28604725
    5970 5mdx:b (5.3) BS03 CLA ? GO:0003729 ... P56777 28604725
    5971 5mdx:b (5.3) BS04 CLA ? GO:0003729 ... P56777 28604725
    5972 5mdx:b (5.3) BS05 CLA ? GO:0003729 ... P56777 28604725
    5973 5mdx:b (5.3) BS06 CLA ? GO:0003729 ... P56777 28604725
    5974 5mdx:b (5.3) BS07 CLA ? GO:0003729 ... P56777 28604725
    5975 5mdx:b (5.3) BS08 CLA ? GO:0003729 ... P56777 28604725
    5976 5mdx:b (5.3) BS09 CLA ? GO:0003729 ... P56777 28604725
    5977 5mdx:b (5.3) BS10 CLA ? GO:0003729 ... P56777 28604725
    5978 5mdx:b (5.3) BS11 CLA ? GO:0003729 ... P56777 28604725
    5979 5mdx:b (5.3) BS12 CLA ? GO:0003729 ... P56777 28604725
    5980 5mdx:b (5.3) BS13 CLA ? GO:0003729 ... P56777 28604725
    5981 5mdx:b (5.3) BS14 CLA ? GO:0003729 ... P56777 28604725
    5982 5mdx:b (5.3) BS15 CLA ? GO:0003729 ... P56777 28604725
    5983 5mdx:b (5.3) BS16 CLA ? GO:0003729 ... P56777 28604725
    5984 5mdx:b (5.3) BS17 CLA ? GO:0003729 ... P56777 28604725
    5985 5mdx:c (5.3) BS01 CLA ? GO:0003729 ... P56778 28604725
    5986 5mdx:c (5.3) BS02 CLA ? GO:0003729 ... P56778 28604725
    5987 5mdx:c (5.3) BS03 CLA ? GO:0003729 ... P56778 28604725
    5988 5mdx:c (5.3) BS04 CLA ? GO:0003729 ... P56778 28604725
    5989 5mdx:c (5.3) BS05 CLA ? GO:0003729 ... P56778 28604725
    5990 5mdx:c (5.3) BS06 CLA ? GO:0003729 ... P56778 28604725
    5991 5mdx:c (5.3) BS07 CLA ? GO:0003729 ... P56778 28604725
    5992 5mdx:c (5.3) BS08 CLA ? GO:0003729 ... P56778 28604725
    5993 5mdx:c (5.3) BS09 CLA ? GO:0003729 ... P56778 28604725
    5994 5mdx:c (5.3) BS10 CLA ? GO:0003729 ... P56778 28604725
    5995 5mdx:c (5.3) BS11 CLA ? GO:0003729 ... P56778 28604725
    5996 5mdx:c (5.3) BS12 CLA ? GO:0003729 ... P56778 28604725
    5997 5mdx:c (5.3) BS13 CLA ? GO:0003729 ... P56778 28604725
    5998 5mdx:d (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    5999 5mdx:d (5.3) BS05 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    6000 5mdx:d (5.3) BS07 CLA 1.10.3.9 GO:0003729 ... P56761 28604725

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218