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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48601 8xkl:8 (2.84) BS04 CLA N/A N/A N/A 38806516
    48602 8xkl:8 (2.84) BS05 CLA N/A N/A N/A 38806516
    48603 8xkl:8 (2.84) BS06 CLA N/A N/A N/A 38806516
    48604 8xkl:8 (2.84) BS07 CLA N/A N/A N/A 38806516
    48605 8xkl:8 (2.84) BS08 CLA N/A N/A N/A 38806516
    48606 8xkl:8 (2.84) BS09 CLA N/A N/A N/A 38806516
    48607 8xkl:8 (2.84) BS10 CLA N/A N/A N/A 38806516
    48608 8xkl:8 (2.84) BS12 CLA N/A N/A N/A 38806516
    48609 8xkl:8 (2.84) BS13 CLA N/A N/A N/A 38806516
    48610 8xkl:8 (2.84) BS19 CLA N/A N/A N/A 38806516
    48611 8xkl:9 (2.84) BS01 CLA N/A N/A N/A 38806516
    48612 8xkl:9 (2.84) BS03 CLA N/A N/A N/A 38806516
    48613 8xkl:9 (2.84) BS04 CLA N/A N/A N/A 38806516
    48614 8xkl:9 (2.84) BS05 CLA N/A N/A N/A 38806516
    48615 8xkl:9 (2.84) BS06 CLA N/A N/A N/A 38806516
    48616 8xkl:9 (2.84) BS07 CLA N/A N/A N/A 38806516
    48617 8xkl:9 (2.84) BS08 CLA N/A N/A N/A 38806516
    48618 8xkl:9 (2.84) BS09 CLA N/A N/A N/A 38806516
    48619 8xkl:9 (2.84) BS10 CLA N/A N/A N/A 38806516
    48620 8xkl:9 (2.84) BS11 CLA N/A N/A N/A 38806516
    48621 8xkl:9 (2.84) BS12 CLA N/A N/A N/A 38806516
    48622 8xkl:G (2.84) BS01 CLA N/A N/A N/A 38806516
    48623 8xkl:P (2.84) BS01 CLA N/A N/A N/A 38806516
    48624 8xkl:P (2.84) BS02 CLA N/A N/A N/A 38806516
    48625 8xkl:P (2.84) BS03 CLA N/A N/A N/A 38806516
    48626 8xkl:P (2.84) BS04 CLA N/A N/A N/A 38806516
    48627 8xkl:P (2.84) BS06 CLA N/A N/A N/A 38806516
    48628 8xkl:P (2.84) BS07 CLA N/A N/A N/A 38806516
    48629 8xkl:P (2.84) BS08 CLA N/A N/A N/A 38806516
    48630 8xkl:P (2.84) BS10 CLA N/A N/A N/A 38806516
    48631 8xkl:p (2.84) BS01 CLA N/A N/A N/A 38806516
    48632 8xkl:p (2.84) BS03 CLA N/A N/A N/A 38806516
    48633 8xkl:p (2.84) BS05 CLA N/A N/A N/A 38806516
    48634 8xkl:p (2.84) BS06 CLA N/A N/A N/A 38806516
    48635 8xkl:p (2.84) BS07 CLA N/A N/A N/A 38806516
    48636 8xkl:p (2.84) BS08 CLA N/A N/A N/A 38806516
    48637 8xkl:p (2.84) BS09 CLA N/A N/A N/A 38806516
    48638 8xkl:p (2.84) BS10 CLA N/A N/A N/A 38806516
    48639 8xkl:p (2.84) BS11 CLA N/A N/A N/A 38806516
    48640 8xkl:p (2.84) BS12 CLA N/A N/A N/A 38806516
    48641 8xkl:p (2.84) BS13 CLA N/A N/A N/A 38806516
    48642 8xkl:p (2.84) BS15 CLA N/A N/A N/A 38806516
    48643 8xkl:p (2.84) BS16 CLA N/A N/A N/A 38806516
    48644 8xkl:p (2.84) BS21 CLA N/A N/A N/A 38806516
    48645 8xkl:s (2.84) BS01 CLA N/A N/A N/A 38806516
    48646 8xkl:s (2.84) BS02 CLA N/A N/A N/A 38806516
    48647 8xkl:s (2.84) BS03 CLA N/A N/A N/A 38806516
    48648 8xkl:s (2.84) BS04 CLA N/A N/A N/A 38806516
    48649 8xkl:s (2.84) BS05 CLA N/A N/A N/A 38806516
    48650 8xkl:s (2.84) BS06 CLA N/A N/A N/A 38806516
    48651 8xlp:1 (2.57) BS02 CLA N/A N/A N/A N/A
    48652 8xlp:1 (2.57) BS03 CLA N/A N/A N/A N/A
    48653 8xlp:1 (2.57) BS04 CLA N/A N/A N/A N/A
    48654 8xlp:1 (2.57) BS05 CLA N/A N/A N/A N/A
    48655 8xlp:1 (2.57) BS07 CLA N/A N/A N/A N/A
    48656 8xlp:1 (2.57) BS08 CLA N/A N/A N/A N/A
    48657 8xlp:1 (2.57) BS09 CLA N/A N/A N/A N/A
    48658 8xlp:1 (2.57) BS10 CLA N/A N/A N/A N/A
    48659 8xlp:1 (2.57) BS14 CLA N/A N/A N/A N/A
    48660 8xlp:1 (2.57) BS15 CLA N/A N/A N/A N/A
    48661 8xlp:2 (2.57) BS01 CLA N/A N/A N/A N/A
    48662 8xlp:2 (2.57) BS02 CLA N/A N/A N/A N/A
    48663 8xlp:2 (2.57) BS03 CLA N/A N/A N/A N/A
    48664 8xlp:2 (2.57) BS04 CLA N/A N/A N/A N/A
    48665 8xlp:2 (2.57) BS05 CLA N/A N/A N/A N/A
    48666 8xlp:2 (2.57) BS06 CLA N/A N/A N/A N/A
    48667 8xlp:2 (2.57) BS07 CLA N/A N/A N/A N/A
    48668 8xlp:2 (2.57) BS08 CLA N/A N/A N/A N/A
    48669 8xlp:2 (2.57) BS09 CLA N/A N/A N/A N/A
    48670 8xlp:2 (2.57) BS11 CLA N/A N/A N/A N/A
    48671 8xlp:2 (2.57) BS12 CLA N/A N/A N/A N/A
    48672 8xlp:3 (2.57) BS01 CLA N/A N/A N/A N/A
    48673 8xlp:3 (2.57) BS02 CLA N/A N/A N/A N/A
    48674 8xlp:3 (2.57) BS03 CLA N/A N/A N/A N/A
    48675 8xlp:3 (2.57) BS04 CLA N/A N/A N/A N/A
    48676 8xlp:3 (2.57) BS06 CLA N/A N/A N/A N/A
    48677 8xlp:3 (2.57) BS07 CLA N/A N/A N/A N/A
    48678 8xlp:3 (2.57) BS08 CLA N/A N/A N/A N/A
    48679 8xlp:3 (2.57) BS09 CLA N/A N/A N/A N/A
    48680 8xlp:3 (2.57) BS10 CLA N/A N/A N/A N/A
    48681 8xlp:3 (2.57) BS11 CLA N/A N/A N/A N/A
    48682 8xlp:4 (2.57) BS01 CLA N/A N/A N/A N/A
    48683 8xlp:4 (2.57) BS02 CLA N/A N/A N/A N/A
    48684 8xlp:4 (2.57) BS03 CLA N/A N/A N/A N/A
    48685 8xlp:4 (2.57) BS05 CLA N/A N/A N/A N/A
    48686 8xlp:4 (2.57) BS06 CLA N/A N/A N/A N/A
    48687 8xlp:4 (2.57) BS07 CLA N/A N/A N/A N/A
    48688 8xlp:4 (2.57) BS08 CLA N/A N/A N/A N/A
    48689 8xlp:4 (2.57) BS10 CLA N/A N/A N/A N/A
    48690 8xlp:4 (2.57) BS11 CLA N/A N/A N/A N/A
    48691 8xlp:5 (2.57) BS01 CLA N/A N/A N/A N/A
    48692 8xlp:5 (2.57) BS02 CLA N/A N/A N/A N/A
    48693 8xlp:5 (2.57) BS04 CLA N/A N/A N/A N/A
    48694 8xlp:5 (2.57) BS05 CLA N/A N/A N/A N/A
    48695 8xlp:5 (2.57) BS06 CLA N/A N/A N/A N/A
    48696 8xlp:5 (2.57) BS07 CLA N/A N/A N/A N/A
    48697 8xlp:5 (2.57) BS08 CLA N/A N/A N/A N/A
    48698 8xlp:5 (2.57) BS09 CLA N/A N/A N/A N/A
    48699 8xlp:5 (2.57) BS10 CLA N/A N/A N/A N/A
    48700 8xlp:5 (2.57) BS11 CLA N/A N/A N/A N/A
    48701 8xlp:5 (2.57) BS12 CLA N/A N/A N/A N/A
    48702 8xlp:5 (2.57) BS14 CLA N/A N/A N/A N/A
    48703 8xlp:5 (2.57) BS15 CLA N/A N/A N/A N/A
    48704 8xlp:5 (2.57) BS21 CLA N/A N/A N/A N/A
    48705 8xlp:6 (2.57) BS01 CLA N/A N/A N/A N/A
    48706 8xlp:6 (2.57) BS02 CLA N/A N/A N/A N/A
    48707 8xlp:6 (2.57) BS03 CLA N/A N/A N/A N/A
    48708 8xlp:6 (2.57) BS04 CLA N/A N/A N/A N/A
    48709 8xlp:6 (2.57) BS06 CLA N/A N/A N/A N/A
    48710 8xlp:6 (2.57) BS07 CLA N/A N/A N/A N/A
    48711 8xlp:6 (2.57) BS08 CLA N/A N/A N/A N/A
    48712 8xlp:6 (2.57) BS10 CLA N/A N/A N/A N/A
    48713 8xlp:6 (2.57) BS11 CLA N/A N/A N/A N/A
    48714 8xlp:A (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    48715 8xlp:A (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    48716 8xlp:A (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    48717 8xlp:A (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    48718 8xlp:A (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    48719 8xlp:A (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    48720 8xlp:B (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    48721 8xlp:B (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    48722 8xlp:B (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    48723 8xlp:B (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    48724 8xlp:B (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    48725 8xlp:B (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    48726 8xlp:B (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    48727 8xlp:B (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    48728 8xlp:B (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    48729 8xlp:B (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    48730 8xlp:B (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    48731 8xlp:B (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    48732 8xlp:B (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    48733 8xlp:B (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    48734 8xlp:B (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    48735 8xlp:B (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    48736 8xlp:C (2.57) BS01 CLA N/A N/A A6MVR2 N/A
    48737 8xlp:C (2.57) BS02 CLA N/A N/A A6MVR2 N/A
    48738 8xlp:C (2.57) BS03 CLA N/A N/A A6MVR2 N/A
    48739 8xlp:C (2.57) BS04 CLA N/A N/A A6MVR2 N/A
    48740 8xlp:C (2.57) BS05 CLA N/A N/A A6MVR2 N/A
    48741 8xlp:C (2.57) BS06 CLA N/A N/A A6MVR2 N/A
    48742 8xlp:C (2.57) BS07 CLA N/A N/A A6MVR2 N/A
    48743 8xlp:C (2.57) BS08 CLA N/A N/A A6MVR2 N/A
    48744 8xlp:C (2.57) BS09 CLA N/A N/A A6MVR2 N/A
    48745 8xlp:C (2.57) BS10 CLA N/A N/A A6MVR2 N/A
    48746 8xlp:C (2.57) BS11 CLA N/A N/A A6MVR2 N/A
    48747 8xlp:C (2.57) BS12 CLA N/A N/A A6MVR2 N/A
    48748 8xlp:C (2.57) BS13 CLA N/A N/A A6MVR2 N/A
    48749 8xlp:D (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    48750 8xlp:D (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    48751 8xlp:D (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    48752 8xlp:D (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    48753 8xlp:D (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    48754 8xlp:G (2.57) BS01 CLA N/A N/A N/A N/A
    48755 8xlp:G (2.57) BS02 CLA N/A N/A N/A N/A
    48756 8xlp:G (2.57) BS03 CLA N/A N/A N/A N/A
    48757 8xlp:G (2.57) BS04 CLA N/A N/A N/A N/A
    48758 8xlp:G (2.57) BS05 CLA N/A N/A N/A N/A
    48759 8xlp:G (2.57) BS06 CLA N/A N/A N/A N/A
    48760 8xlp:G (2.57) BS07 CLA N/A N/A N/A N/A
    48761 8xlp:G (2.57) BS08 CLA N/A N/A N/A N/A
    48762 8xlp:H (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    48763 8xlp:H (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    48764 8xlp:H (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    48765 8xlp:H (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    48766 8xlp:I (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    48767 8xlp:K (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    48768 8xlp:K (2.57) BS02 CLA N/A GO:0005737 ... A6MVZ3 N/A
    48769 8xlp:L (2.57) BS01 CLA N/A GO:0005737 ... A6MVV3 N/A
    48770 8xlp:N (2.57) BS02 CLA N/A N/A N/A N/A
    48771 8xlp:N (2.57) BS03 CLA N/A N/A N/A N/A
    48772 8xlp:N (2.57) BS04 CLA N/A N/A N/A N/A
    48773 8xlp:N (2.57) BS05 CLA N/A N/A N/A N/A
    48774 8xlp:N (2.57) BS07 CLA N/A N/A N/A N/A
    48775 8xlp:N (2.57) BS08 CLA N/A N/A N/A N/A
    48776 8xlp:N (2.57) BS09 CLA N/A N/A N/A N/A
    48777 8xlp:N (2.57) BS10 CLA N/A N/A N/A N/A
    48778 8xlp:N (2.57) BS14 CLA N/A N/A N/A N/A
    48779 8xlp:N (2.57) BS15 CLA N/A N/A N/A N/A
    48780 8xlp:O (2.57) BS01 CLA N/A N/A N/A N/A
    48781 8xlp:O (2.57) BS02 CLA N/A N/A N/A N/A
    48782 8xlp:O (2.57) BS03 CLA N/A N/A N/A N/A
    48783 8xlp:O (2.57) BS04 CLA N/A N/A N/A N/A
    48784 8xlp:O (2.57) BS05 CLA N/A N/A N/A N/A
    48785 8xlp:O (2.57) BS06 CLA N/A N/A N/A N/A
    48786 8xlp:O (2.57) BS07 CLA N/A N/A N/A N/A
    48787 8xlp:O (2.57) BS08 CLA N/A N/A N/A N/A
    48788 8xlp:O (2.57) BS09 CLA N/A N/A N/A N/A
    48789 8xlp:O (2.57) BS11 CLA N/A N/A N/A N/A
    48790 8xlp:O (2.57) BS12 CLA N/A N/A N/A N/A
    48791 8xlp:P (2.57) BS01 CLA N/A N/A N/A N/A
    48792 8xlp:P (2.57) BS02 CLA N/A N/A N/A N/A
    48793 8xlp:P (2.57) BS03 CLA N/A N/A N/A N/A
    48794 8xlp:P (2.57) BS04 CLA N/A N/A N/A N/A
    48795 8xlp:P (2.57) BS06 CLA N/A N/A N/A N/A
    48796 8xlp:P (2.57) BS07 CLA N/A N/A N/A N/A
    48797 8xlp:P (2.57) BS08 CLA N/A N/A N/A N/A
    48798 8xlp:P (2.57) BS09 CLA N/A N/A N/A N/A
    48799 8xlp:P (2.57) BS10 CLA N/A N/A N/A N/A
    48800 8xlp:P (2.57) BS11 CLA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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